Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf50 Gene 0 22.83 25.70 89.34 36.50 34.80 41.97 25.28 39.12 38.83 46.04 98.34 45.19 20.58 154.75 179.36 155.49 104.30 42.25 45.07 29.86 38.94 14.08 13.50 2 491163 Transcript 0 3.17 6.61 1.84 0.00 0.00 4.58 1.32 1.73 0.00 1.72 2.42 0.00 0.00 4.47 10.15 2.97 0.00 1.85 1.59 1.06 0.55 0.00 2.20 3 357429 Transcript 1 120.47 75.18 184.06 55.10 44.57 123.39 118.22 48.75 27.00 46.93 141.98 5.40 13.64 83.17 248.35 97.07 107.53 42.86 42.82 67.43 27.06 2.88 32.10 4 425726 Transcript 0 2.82 12.96 11.74 4.06 0.00 6.76 6.01 0.00 5.30 2.95 13.85 6.15 6.01 9.77 42.90 10.94 13.93 11.48 0.00 18.22 0.00 0.00 0.00 5 397100 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 397098 Transcript 0 1.17 3.06 7.90 3.19 3.36 9.83 7.15 4.17 3.72 1.76 3.85 1.92 1.46 4.47 7.14 8.01 3.91 3.17 2.75 6.02 1.61 2.11 4.05 7 488073 Transcript 0 6.53 7.46 15.07 4.98 9.54 15.50 12.90 5.07 4.72 4.57 14.09 2.80 1.17 11.53 25.58 12.24 11.60 5.23 7.81 8.45 2.78 0.69 2.94 8 444428 Transcript 0 4.06 2.63 3.90 2.59 14.42 0.00 4.59 0.00 2.08 2.42 0.00 0.00 0.00 0.02 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 465681 Transcript 0 4.85 4.36 8.90 9.94 5.66 6.45 5.92 6.36 4.97 9.18 19.45 23.93 7.21 51.18 36.45 61.42 30.39 12.88 12.10 6.04 2.68 1.30 2.18 10 456538 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 412051 Transcript 0 10.74 3.09 42.55 8.92 24.19 8.12 6.14 37.95 29.40 33.34 24.59 23.86 0.00 50.44 20.40 64.77 21.41 18.20 13.46 0.00 13.47 0.00 0.00 12 ER1a ExonRegion 0 3.17 6.61 1.84 0.00 0.00 4.58 1.32 1.73 0.00 1.72 2.42 0.00 0.00 4.47 10.15 2.97 0.00 1.85 1.59 1.06 0.55 0.00 2.20 13 ER1b ExonRegion 1 31.37 21.29 20.40 1.12 10.23 27.83 29.36 8.13 0.51 10.59 28.77 0.00 0.00 27.71 64.00 41.09 5.24 10.65 9.37 14.02 6.48 12.87 27.81 14 E1_Da NovelBoundary 1 156.92 107.74 147.01 25.07 90.15 171.72 175.64 29.29 14.79 31.51 119.08 0.00 6.01 94.36 352.68 134.75 83.78 54.64 55.63 104.12 16.56 31.72 63.85 15 E1a_E2b KnownJunction 0 0.00 46.04 4.70 0.00 21.48 33.45 25.04 4.72 0.00 3.09 9.84 0.00 0.00 6.65 13.23 12.30 17.02 18.99 7.53 8.31 14.21 0.00 3.76 16 ER1c ExonRegion 1 76.77 86.43 87.61 16.79 59.60 118.45 117.47 20.35 12.97 25.91 101.21 2.56 3.62 96.27 308.06 91.46 75.47 39.31 39.53 75.92 20.13 22.54 50.59 17 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 0.00 0.00 0.00 17.55 6.15 3.37 2.45 3.39 4.60 2.22 2.20 6.15 18 E1b_E2b KnownJunction 1 2.82 12.96 11.74 4.06 0.00 6.76 6.01 0.00 5.30 2.95 13.85 6.15 6.01 9.77 42.90 10.94 13.93 11.48 0.00 18.22 0.00 0.00 0.00 19 E1_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 20 E1c_E2b KnownJunction 1 120.47 75.18 184.06 55.10 44.57 123.39 118.22 48.75 27.00 46.93 141.98 5.40 13.64 83.17 248.35 97.07 107.53 42.86 42.82 67.43 27.06 2.88 32.10 21 ER1d ExonRegion 1 102.48 86.59 132.79 35.87 55.91 142.17 136.93 33.75 21.00 32.42 156.36 7.75 10.86 130.78 373.80 102.30 107.89 41.14 53.15 101.34 19.83 22.26 58.73 22 ER1e ExonRegion 1 86.57 72.80 144.84 39.52 56.19 138.09 117.96 43.90 21.61 40.26 147.29 4.33 9.38 96.80 258.79 92.43 106.95 34.92 56.38 86.17 17.19 8.33 36.71 23 ER1f ExonRegion 0 2.35 3.42 5.76 2.74 6.71 4.05 4.58 5.79 4.86 2.07 2.60 3.83 2.93 4.18 9.09 3.28 4.08 6.34 5.50 12.04 3.21 1.16 4.77 24 E1_Dd NovelBoundary 0 7.56 10.06 15.67 7.09 11.80 2.90 12.54 6.20 8.68 7.90 2.68 0.00 12.82 2.47 14.83 4.36 8.60 9.91 3.95 21.28 3.15 3.12 8.37 25 E1d_E2b KnownJunction 0 0.00 2.70 10.05 3.63 0.00 15.62 9.72 2.55 2.58 1.45 5.11 0.00 0.00 4.77 5.19 12.73 3.74 0.00 0.00 0.00 0.00 3.06 3.33 26 ER2a ExonRegion 0 26.10 29.83 58.82 16.81 22.30 59.90 48.10 18.44 10.70 15.67 54.12 7.22 4.69 46.02 94.77 45.57 45.11 18.48 27.61 30.50 10.28 2.78 11.75 27 ER2b ExonRegion 0 32.75 38.17 154.91 47.27 38.70 66.64 51.82 49.21 27.33 37.46 122.61 33.86 12.22 96.50 164.61 118.86 147.70 44.66 71.09 69.62 50.46 23.68 33.56 28 E2_Da NovelBoundary 0 3.48 0.00 18.60 9.76 0.00 0.00 4.42 5.50 4.14 2.42 2.05 0.00 0.00 2.30 4.45 3.59 4.39 1.74 0.00 20.07 5.50 0.00 3.24 29 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E2a_E7a KnownJunction 1 32.45 8.88 211.91 65.76 28.61 51.90 15.50 36.84 31.31 49.21 152.35 24.16 0.00 213.55 467.15 286.59 223.94 77.02 90.92 134.03 77.22 45.07 104.31 31 I2_AR1 ActiveIntronRegion 0 8.56 6.89 14.07 9.05 13.36 4.41 20.71 11.69 5.63 4.17 0.66 2.11 4.01 1.48 10.25 9.06 9.56 15.20 14.77 20.01 2.82 0.91 5.73 32 I2_SR2 SilentIntronRegion 0 4.30 2.29 9.13 4.90 3.34 2.78 12.08 7.99 3.16 4.23 0.00 2.91 9.16 0.00 20.99 9.10 7.07 8.57 15.98 10.47 3.10 0.26 8.49 33 I2_SR5 SilentIntronRegion 0 0.20 4.86 9.42 2.73 9.12 1.87 11.55 4.16 3.73 4.18 0.21 0.00 0.00 0.00 0.00 4.35 7.27 6.47 4.60 7.45 10.04 0.62 8.10 34 I2_AR6 ActiveIntronRegion 0 1.22 2.62 7.98 3.89 4.29 3.16 10.04 8.46 3.34 3.98 0.92 1.02 0.45 0.13 4.11 5.17 4.16 15.46 7.90 15.34 2.48 0.00 0.72 35 ER3a ExonRegion 0 0.00 0.00 1.44 3.09 2.88 2.09 3.51 1.86 2.90 2.59 2.22 3.97 0.00 0.10 7.56 3.39 1.28 2.45 3.64 3.30 0.84 0.00 0.00 36 E3a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 12.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 Ix Intron 0 9.83 11.83 6.47 4.67 12.02 1.01 16.16 6.75 3.08 4.18 3.67 17.74 11.10 7.36 13.46 31.32 24.55 9.38 6.84 9.51 6.21 3.49 4.62 38 Ix_AR2 ActiveIntronRegion 0 13.16 12.90 5.79 2.97 13.47 1.02 17.82 6.90 1.19 4.50 5.91 21.87 10.56 9.59 19.12 34.74 33.66 10.22 5.05 10.77 8.35 4.95 3.97 39 Ix_SR2 SilentIntronRegion 0 10.32 13.66 6.44 5.24 13.29 0.75 18.80 5.70 3.15 3.91 3.03 22.09 14.67 6.64 12.19 30.94 23.28 5.97 9.85 8.97 4.42 3.42 5.55 40 Ix_AR1 ActiveIntronRegion 0 7.82 12.23 9.01 7.63 13.12 0.67 16.59 9.83 5.92 4.53 2.88 13.45 10.44 5.88 9.80 34.15 22.04 11.63 4.43 8.66 6.37 2.80 2.91 41 Ix_SR1 SilentIntronRegion 0 5.06 5.15 5.35 3.24 5.51 1.98 6.52 6.28 3.35 4.07 2.34 4.20 3.73 6.97 10.90 24.19 15.26 14.56 4.58 9.69 7.11 1.93 5.03 42 Ix Intron 1 7.26 12.57 6.63 3.98 10.76 1.62 14.80 8.85 6.32 2.85 2.84 38.78 24.16 8.75 17.26 36.15 30.43 4.96 4.37 11.06 4.75 4.49 6.34 43 Ix_SR1 SilentIntronRegion 0 7.58 12.89 6.91 4.16 11.12 1.69 15.32 9.24 6.47 2.98 2.96 40.40 25.23 9.05 17.68 37.31 31.66 5.15 4.57 11.54 4.96 4.69 6.60 44 Ix_AR1 ActiveIntronRegion 0 11.85 1.73 2.08 2.08 4.55 1.56 8.51 7.43 3.95 0.00 0.00 0.00 4.46 3.41 3.63 14.79 9.24 4.20 2.71 0.11 1.93 0.00 3.08 45 ER4a ExonRegion 0 1.15 2.03 2.30 1.16 4.22 0.00 1.28 0.00 0.82 1.81 0.00 0.00 0.00 0.05 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E4a_E7a KnownJunction 0 6.96 3.22 5.50 4.03 24.62 0.00 7.91 0.00 3.33 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 Ix_AR2 ActiveIntronRegion 0 10.77 7.90 11.23 12.65 12.24 10.25 11.24 11.69 22.13 15.90 12.14 14.14 3.05 15.32 5.86 8.16 16.15 5.21 8.80 10.19 3.67 6.65 7.16 48 Ix_SR1 SilentIntronRegion 0 7.22 2.43 7.53 13.07 11.12 11.86 8.45 5.25 26.15 15.97 13.46 6.42 3.22 9.45 4.44 7.05 19.61 6.34 12.17 9.07 6.56 3.77 2.94 49 Ix_AR1 ActiveIntronRegion 0 9.53 7.48 5.76 10.60 7.17 11.63 10.61 10.17 25.16 13.01 10.54 13.59 9.33 18.66 7.28 12.55 18.15 5.58 15.20 12.94 6.15 4.54 10.16 50 E5_Ac NovelBoundary 1 121.43 68.74 39.59 32.33 60.61 192.28 60.33 20.50 30.96 39.78 136.35 0.00 0.00 43.32 90.98 125.27 173.45 22.34 54.31 14.19 81.73 6.06 7.94 51 ER5a ExonRegion 0 1.41 2.71 0.00 0.00 0.00 1.22 0.44 0.00 0.41 0.00 2.58 0.00 0.00 4.33 5.80 0.99 2.20 0.00 0.00 1.42 0.00 0.00 0.00 52 ER5b ExonRegion 0 15.39 19.23 7.13 5.20 7.54 27.51 6.98 1.89 4.38 5.11 18.63 0.00 0.00 27.02 41.67 27.56 42.01 0.00 6.66 5.03 4.81 0.00 1.07 53 ER5c ExonRegion 1 40.97 39.54 41.38 15.46 70.30 78.76 23.34 18.05 33.26 29.30 66.55 5.24 5.50 103.92 78.76 148.97 89.86 15.38 40.86 11.64 29.60 5.25 5.40 54 E5a_E6a KnownJunction 0 0.00 0.00 1.69 1.27 0.00 0.00 0.00 0.00 0.00 1.18 4.63 0.00 0.00 2.41 4.45 19.14 3.93 0.00 4.71 0.00 0.00 0.00 0.00 55 E5a_E7a KnownJunction 0 10.74 3.09 42.55 8.92 24.19 8.12 6.14 37.95 29.40 33.34 24.59 23.86 0.00 50.44 20.40 64.77 21.41 18.20 13.46 0.00 13.47 0.00 0.00 56 E6_Aa NovelBoundary 1 9.78 3.35 4.58 9.02 4.24 0.00 14.13 3.70 4.86 8.17 9.58 106.08 18.67 27.14 26.70 40.25 11.97 4.27 15.25 8.37 0.00 0.00 0.00 57 ER6a ExonRegion 1 10.50 3.67 3.82 2.54 4.51 2.19 4.67 0.41 2.81 3.22 14.63 74.53 13.52 38.53 18.20 33.86 16.57 11.92 10.49 5.76 0.04 1.14 2.36 58 E6_Da KnownBoundary 1 14.67 13.02 8.31 5.33 12.73 11.02 20.40 1.77 5.44 8.33 21.85 108.64 19.48 73.75 14.71 52.46 43.67 26.41 18.64 6.07 0.00 3.12 3.50 59 ER6b ExonRegion 0 8.29 6.00 17.80 19.87 11.32 11.67 11.39 12.73 9.53 18.35 36.32 47.85 14.42 98.04 67.09 121.85 58.57 25.76 24.20 10.67 5.36 2.60 4.37 60 E6_Db NovelBoundary 0 16.82 2.43 16.76 8.32 32.00 18.51 21.07 12.08 9.52 9.86 17.11 18.91 0.00 10.07 13.35 41.10 17.48 4.35 17.04 14.76 3.15 2.82 3.41 61 I6_AR1 ActiveIntronRegion 0 2.16 3.88 11.97 17.46 10.14 6.41 5.21 7.88 5.63 7.47 12.39 5.79 2.37 17.87 17.86 33.35 14.91 5.89 11.14 6.51 3.85 1.21 1.71 62 ER7a ExonRegion 0 36.37 81.11 326.55 106.16 92.67 175.67 96.84 108.10 113.26 118.07 302.00 74.83 38.49 384.55 575.58 388.08 299.75 103.18 136.18 118.68 148.26 49.49 38.83 63 E7a_E8a KnownJunction 1 116.76 228.25 475.74 133.48 208.49 366.61 170.60 157.07 146.32 191.98 369.51 36.61 68.34 480.67 717.48 485.60 417.86 129.71 160.85 118.50 207.14 62.64 26.80 64 ER8a ExonRegion 0 96.64 160.68 441.60 164.26 248.88 312.26 128.33 189.54 179.24 174.55 483.91 132.31 55.88 517.00 776.23 411.02 436.08 137.75 166.80 134.90 232.20 77.55 35.74 65 E8a_E9a KnownJunction 0 88.39 190.03 444.22 169.94 135.48 208.12 101.22 182.49 180.81 164.15 526.08 176.01 61.20 697.87 885.22 604.88 331.65 217.55 220.81 134.35 234.75 84.81 55.40 66 ER9a ExonRegion 0 100.88 91.23 316.74 99.19 68.50 118.08 53.33 131.92 150.81 153.17 385.49 112.99 65.12 533.33 639.81 409.05 334.37 145.65 108.52 91.79 182.08 50.22 43.44 67 E9_Da KnownBoundary 0 67.20 121.10 276.66 92.40 157.13 134.75 86.51 98.17 136.69 142.69 258.22 69.32 31.82 512.10 601.77 304.88 258.91 126.89 169.23 74.59 138.01 43.41 54.63 68 E9_Db KnownBoundary 0 41.19 70.58 208.15 72.45 45.08 102.55 56.13 87.28 87.70 100.14 165.25 41.86 20.13 283.95 393.23 211.91 208.32 70.51 62.59 30.87 84.33 5.94 20.15 69 ER9b ExonRegion 1 46.89 83.77 215.57 69.25 72.97 100.44 61.82 92.41 103.04 120.82 240.05 52.79 21.83 441.57 479.49 253.09 231.06 89.90 109.04 53.76 116.54 28.93 31.29 70 ER9c ExonRegion 0 92.62 85.73 271.44 77.89 86.10 132.41 59.61 110.01 120.86 148.80 242.83 56.70 63.13 423.32 545.23 344.95 258.40 100.04 77.83 68.07 104.14 34.81 35.24 71 E9_Dc KnownBoundary 0 201.89 132.08 437.77 141.87 163.24 199.94 97.91 173.09 170.92 223.84 289.49 73.07 33.76 646.54 745.04 481.24 352.97 217.05 243.68 81.37 122.32 55.97 64.36 72 ER9d ExonRegion 0 69.34 83.19 362.20 121.64 129.81 115.03 62.36 153.89 163.13 183.62 349.67 83.03 61.54 465.02 639.36 431.44 311.78 125.72 150.41 76.72 152.13 59.05 44.41 73 ER9e ExonRegion 1 9.52 3.66 25.73 7.22 10.97 8.80 8.34 3.28 4.57 13.88 17.78 51.09 29.08 118.56 216.14 2.97 22.45 0.00 12.74 4.47 14.54 4.17 0.00 74 ER9f ExonRegion 0 0.00 0.00 1.35 0.65 4.93 4.34 3.21 0.00 2.15 2.78 12.21 8.89 3.95 22.22 27.33 0.00 5.04 0.00 8.05 0.00 4.64 3.29 0.00 75 IG16_SR3 SilentIntergenicRegion 0 2.97 3.69 18.25 3.75 6.04 4.08 1.68 7.85 6.49 8.01 2.51 0.35 0.88 1.69 4.45 4.98 5.54 8.86 8.28 5.32 2.94 0.57 2.11 76 IG16_AR2 ActiveIntergenicRegion 0 2.66 7.67 19.37 4.95 13.25 4.90 1.87 8.30 8.10 9.67 1.37 1.36 1.21 1.61 4.39 5.61 2.08 6.78 8.51 6.35 3.29 1.31 1.85