Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZDHHC4 Gene 0 47.31 72.04 104.80 115.23 69.02 80.58 50.74 68.21 82.81 100.43 74.80 44.54 41.01 70.88 80.65 49.73 48.70 85.04 89.55 57.78 46.31 43.82 44.00 2 405731 Transcript 0 2.74 6.05 15.76 9.16 0.00 8.12 1.77 0.00 5.67 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.63 0.00 0.00 0.00 3 396707 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 396713 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 335965 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 493944 Transcript 0 0.06 1.25 3.06 1.21 1.76 0.13 0.96 2.35 0.12 0.95 1.41 0.00 10.05 3.13 1.57 1.10 6.27 3.83 0.91 2.86 0.03 2.26 0.04 7 489138 Transcript 0 2.76 0.53 4.63 6.68 1.58 1.70 4.85 4.63 2.89 4.90 5.86 2.88 5.08 7.18 8.25 7.83 6.31 7.79 4.56 2.67 5.08 4.57 6.79 8 474097 Transcript 0 12.99 15.58 20.84 24.88 20.96 20.95 19.58 13.24 15.26 21.82 25.01 20.43 22.63 20.61 22.35 18.24 13.90 14.03 17.32 11.50 7.13 8.20 8.16 9 396709 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 483589 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 496017 Transcript 0 1.01 1.03 1.39 4.36 1.76 0.95 2.20 2.00 0.88 1.80 1.63 1.96 0.98 3.63 3.23 2.35 1.62 1.40 0.68 2.08 2.23 1.75 1.80 12 396706 Transcript 0 7.62 10.12 9.80 5.38 6.34 3.01 3.29 12.47 14.95 15.06 12.51 8.82 0.41 6.09 7.83 2.99 1.30 18.19 19.79 7.63 1.41 1.45 9.54 13 474738 Transcript 0 23.52 11.63 16.31 24.65 14.46 24.64 7.47 14.96 11.52 19.73 19.92 6.08 4.61 14.45 14.25 21.30 10.42 21.96 23.67 13.46 3.42 3.40 8.11 14 ER1a ExonRegion 0 12.49 33.66 0.55 1.36 8.03 53.27 15.89 0.00 0.00 0.52 2.32 0.00 0.00 2.60 10.01 3.57 1.65 0.28 7.33 5.85 4.08 0.63 5.87 15 E1_Ae KnownBoundary 0 90.24 136.36 19.46 20.18 100.08 273.88 115.84 18.44 17.68 14.83 23.90 0.00 0.00 17.25 35.11 30.59 21.32 38.92 51.11 32.85 19.77 19.17 19.29 16 ER1b ExonRegion 0 28.12 62.75 6.65 3.31 29.43 115.01 48.99 0.00 4.94 6.06 9.66 0.00 0.00 9.28 17.82 10.61 15.09 5.02 22.75 10.94 12.28 10.12 8.39 17 ER1c ExonRegion 0 29.63 73.21 7.35 4.09 34.78 132.03 58.25 0.00 7.41 8.03 11.60 0.00 0.00 11.37 20.31 11.89 16.50 5.54 28.67 12.77 16.53 12.50 10.28 18 ER1d ExonRegion 0 32.10 73.21 7.35 4.09 35.23 136.01 65.98 0.00 7.41 8.98 11.60 0.00 0.00 13.26 23.69 11.89 16.50 7.08 31.85 12.77 17.63 13.89 11.75 19 E1_Ag KnownBoundary 0 0.00 0.00 1.77 0.00 0.00 5.79 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E1i KnownJunction 0 47.34 25.13 4.44 3.63 16.21 12.89 25.17 0.00 0.00 12.20 17.74 5.40 0.00 8.06 9.64 0.00 0.00 13.06 17.04 2.94 2.29 3.06 4.35 22 E1a_E2a KnownJunction 0 2.74 6.05 15.76 9.16 0.00 8.12 1.77 0.00 5.67 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.63 0.00 0.00 0.00 23 E1a_E2b KnownJunction 0 171.07 226.34 44.26 34.33 77.50 168.37 159.25 36.76 67.62 54.40 22.16 0.00 0.00 27.19 63.04 72.46 66.29 68.56 84.52 46.60 60.67 34.41 44.05 24 ER1e ExonRegion 0 68.87 115.13 19.13 11.32 50.22 177.03 91.05 7.58 17.39 20.20 19.63 0.00 0.00 22.24 33.92 24.46 32.76 19.33 52.68 23.24 30.34 25.64 21.23 25 E1_Ah KnownBoundary 0 0.00 10.26 8.01 6.53 6.54 9.54 0.00 0.00 0.00 14.34 7.11 0.00 0.00 9.06 0.00 3.33 0.00 0.00 11.01 2.62 2.35 0.00 0.00 26 ER1f ExonRegion 1 121.57 165.23 37.76 19.00 67.56 186.93 130.82 15.66 39.60 40.00 32.86 0.00 0.00 36.64 49.14 47.55 52.40 36.61 70.08 39.10 47.52 32.69 32.67 27 ER1g ExonRegion 1 129.11 174.89 40.44 23.17 72.25 179.71 135.04 17.28 43.23 45.88 34.79 0.00 0.00 43.85 60.93 59.44 49.51 38.80 79.63 40.43 55.09 37.50 35.24 28 ER1h ExonRegion 0 0.91 8.13 6.83 5.84 8.03 18.34 2.65 1.73 1.24 13.60 4.97 0.00 0.00 9.28 16.58 4.25 4.72 5.28 10.92 4.26 4.09 0.89 0.00 29 ER1i ExonRegion 0 4.61 8.45 7.89 6.45 3.97 19.89 4.19 2.95 2.44 20.51 13.73 6.01 0.00 5.35 14.06 6.78 7.15 18.15 9.33 4.71 3.86 4.14 6.01 30 E1_Ai KnownBoundary 0 3.63 15.72 4.61 0.00 3.99 0.00 4.33 0.00 1.53 2.98 0.00 6.00 0.00 2.30 0.00 0.00 4.77 14.38 3.67 0.00 0.00 2.57 7.26 31 ER1j ExonRegion 0 21.75 11.72 13.30 11.07 5.89 6.80 6.97 5.15 5.86 25.04 24.44 10.49 6.24 22.36 21.71 9.47 10.49 21.56 31.61 11.29 15.85 16.81 23.58 32 E1b_E2a KnownJunction 0 14.15 12.04 11.00 4.13 0.00 0.00 0.00 1.68 7.90 10.37 12.21 13.50 0.00 2.18 6.30 3.67 0.00 16.62 19.01 0.00 0.00 0.00 11.35 33 E1b_E2b KnownJunction 0 2.96 6.71 7.42 6.83 0.00 8.40 1.94 1.64 2.72 13.48 21.64 0.00 21.75 24.19 23.36 7.95 8.98 16.25 0.00 11.51 8.34 19.84 12.38 34 ER2a ExonRegion 0 26.26 32.78 24.01 18.77 14.59 45.71 17.55 4.32 16.81 22.75 16.55 11.61 4.26 16.91 16.26 19.36 15.05 29.20 21.48 16.67 7.18 8.05 16.06 35 E2_Ab KnownBoundary 0 24.75 43.15 37.40 34.99 7.81 5.74 12.37 14.05 21.53 25.87 18.90 25.06 6.82 21.72 29.42 24.44 12.81 33.49 26.82 25.12 8.65 16.72 7.85 36 ER2b ExonRegion 0 91.42 143.04 125.63 126.39 65.23 93.23 66.38 90.92 109.73 144.65 104.51 35.20 52.05 88.63 87.55 73.24 78.90 128.33 158.01 73.46 99.54 74.74 77.61 37 E2_Da NovelBoundary 0 11.04 39.34 21.50 38.59 29.97 31.52 17.67 22.59 11.34 40.53 9.05 7.65 18.99 8.24 11.50 20.17 11.31 51.36 58.07 10.29 14.46 12.49 3.16 38 E2a_E3a KnownJunction 0 79.79 234.37 232.75 267.20 90.92 75.41 65.10 149.39 162.85 225.13 152.35 106.83 95.29 208.55 183.32 153.29 117.16 196.90 297.23 143.62 142.46 170.72 134.96 39 E2b_E3a KnownJunction 0 0.00 21.05 13.48 34.66 3.65 8.18 2.25 16.51 7.12 23.83 7.69 0.00 0.00 2.47 0.00 10.85 8.42 33.99 24.75 8.69 0.00 8.39 8.19 40 ER2c ExonRegion 0 6.27 24.40 14.66 32.66 12.35 19.68 8.66 19.61 9.88 31.32 9.22 4.16 9.56 5.68 5.58 16.46 8.13 39.87 43.12 8.59 6.53 12.74 3.39 41 ER3a ExonRegion 0 58.85 169.85 268.48 325.94 238.85 249.60 127.66 178.32 222.03 279.14 183.22 72.76 88.73 184.98 159.62 147.29 114.97 243.08 283.50 124.85 155.15 138.12 123.05 42 E3_Da KnownBoundary 0 3.63 3.09 6.45 5.43 0.00 2.90 0.00 9.00 1.59 6.98 4.47 6.30 0.00 4.94 4.45 10.77 4.77 14.55 4.05 7.99 8.34 5.76 0.00 43 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E3a_E4a KnownJunction 0 116.61 205.42 285.89 365.49 383.45 387.62 251.29 213.09 234.43 310.20 195.42 99.93 162.49 193.42 222.88 169.19 110.14 308.04 342.97 149.63 125.90 188.05 145.71 45 ER3b ExonRegion 0 2.76 0.53 4.63 6.68 1.58 1.70 4.85 4.63 2.89 4.90 5.86 2.88 5.08 7.18 8.25 7.83 6.31 7.79 4.56 2.67 5.08 4.57 6.79 46 E3_Ab KnownBoundary 0 3.48 2.50 16.08 9.19 7.47 4.83 7.77 10.31 2.69 11.15 7.42 5.25 6.66 9.59 4.82 0.00 13.00 8.29 0.00 16.23 2.97 4.65 0.00 47 ER3c ExonRegion 0 3.93 2.91 5.15 6.31 2.70 1.68 5.12 4.53 1.78 3.14 3.81 3.49 6.89 8.80 5.12 8.37 9.16 11.12 0.36 6.88 7.04 3.19 5.84 48 E3_Db KnownBoundary 0 6.89 14.60 28.53 45.48 11.12 5.39 17.84 12.94 10.39 9.86 4.58 12.30 0.00 9.71 4.33 10.00 8.04 21.14 12.61 7.22 8.46 2.39 11.69 49 ER3d ExonRegion 0 2.02 2.06 2.77 8.71 3.51 1.89 4.40 4.00 1.75 3.59 3.25 3.92 1.95 7.26 6.45 4.71 3.24 2.81 1.35 4.16 4.47 3.50 3.61 50 E4_Aa NovelBoundary 0 11.34 12.10 6.48 14.52 28.01 2.67 9.80 11.58 5.67 3.33 8.95 6.15 12.66 4.30 0.00 4.36 12.72 10.53 0.00 9.01 0.00 9.37 0.00 51 ER4a ExonRegion 0 175.84 270.58 452.87 534.77 295.16 334.05 210.58 269.92 316.34 401.71 286.30 172.83 198.06 321.60 308.94 213.79 198.68 375.67 425.93 210.35 174.36 239.52 180.72 52 E4a_E5a KnownJunction 0 210.63 360.53 470.00 529.07 204.24 279.78 170.47 292.49 303.64 366.34 321.87 180.36 149.67 327.45 314.85 216.95 182.05 287.94 432.77 273.76 202.57 202.68 173.03 53 ER5a ExonRegion 0 177.73 302.00 353.84 403.54 206.33 242.67 144.30 232.22 281.55 341.41 293.28 156.22 162.37 253.23 245.93 164.18 182.25 265.02 335.94 199.83 169.24 167.15 137.64 54 E5_Da KnownBoundary 0 0.00 6.31 5.50 1.53 7.30 0.00 0.00 4.15 0.00 1.34 0.00 0.00 6.82 2.30 0.00 4.36 8.04 8.71 7.53 2.81 0.00 5.39 0.00 55 E5a_E6a KnownJunction 0 151.73 318.89 341.27 396.99 314.18 348.21 236.93 234.78 261.22 328.04 264.38 171.06 135.22 295.78 314.61 151.67 125.76 262.73 347.49 214.63 123.86 185.17 172.77 56 ER5b ExonRegion 0 0.06 1.25 3.06 1.21 1.76 0.13 0.96 2.35 0.12 0.95 1.41 0.00 10.05 3.13 1.57 1.10 6.27 3.83 0.91 2.86 0.03 2.26 0.04 57 E6_Aa NovelBoundary 0 3.78 0.00 6.48 9.62 6.96 0.00 14.88 2.55 3.91 4.16 7.63 6.45 19.48 2.12 0.00 10.25 0.00 4.31 0.00 3.07 0.00 2.57 0.00 58 ER6a ExonRegion 0 168.63 263.70 325.75 397.68 355.07 355.89 229.80 237.72 267.12 323.15 262.31 199.46 162.40 237.69 265.46 171.04 166.72 253.02 276.70 200.76 129.27 139.48 145.85 59 E6_Da KnownBoundary 0 56.08 61.50 28.59 42.19 42.53 72.23 36.57 15.94 10.01 29.84 53.59 35.41 61.03 39.79 57.36 46.48 47.41 51.94 46.78 63.41 27.24 18.98 30.47 60 E6a_E7b KnownJunction 0 112.24 166.35 382.36 380.87 170.12 177.40 123.96 204.10 233.42 286.38 166.67 105.93 132.46 188.83 295.69 132.70 134.08 208.88 243.58 207.35 94.64 94.05 154.17 61 ER6b ExonRegion 0 12.99 15.58 20.84 24.88 20.96 20.95 19.58 13.24 15.26 21.82 25.01 20.43 22.63 20.61 22.35 18.24 13.90 14.03 17.32 11.50 7.13 8.20 8.16 62 E6_Db NovelBoundary 1 40.30 19.34 26.40 24.27 29.54 19.65 17.49 12.94 15.39 24.98 0.00 24.76 23.21 14.30 13.35 3.85 14.12 1.62 16.28 13.61 2.29 12.80 0.00 63 E7_Aa NovelBoundary 0 25.93 15.13 23.95 28.20 37.27 31.74 12.81 10.64 8.62 37.90 23.90 12.60 25.97 14.72 8.90 4.36 4.77 26.45 12.71 12.78 10.63 0.00 0.00 64 ER7a ExonRegion 0 23.52 11.63 16.31 24.65 14.46 24.64 7.47 14.96 11.52 19.73 19.92 6.08 4.61 14.45 14.25 21.30 10.42 21.96 23.67 13.46 3.42 3.40 8.11 65 E7_Ab KnownBoundary 0 22.08 11.51 21.58 32.53 31.58 28.73 9.67 12.77 14.76 21.33 19.69 26.56 6.66 26.96 17.80 12.05 17.77 29.89 31.06 17.64 7.91 5.63 15.45 66 ER7b ExonRegion 0 127.41 181.21 387.83 397.35 196.23 239.02 143.77 215.88 273.45 328.32 210.84 161.95 106.91 208.55 291.01 134.14 146.78 277.40 258.95 194.99 143.48 124.29 132.17 67 E7a_E8a KnownJunction 0 93.13 245.61 365.33 368.45 220.63 246.05 237.37 259.63 326.88 316.51 200.26 158.45 57.46 160.81 303.48 121.51 131.09 241.80 138.17 230.23 111.38 88.18 118.31 68 Ix_AR1 ActiveIntronRegion 0 4.16 1.28 3.70 2.23 4.20 0.32 1.23 4.69 1.73 2.44 1.21 3.93 4.21 1.20 2.37 1.40 5.18 0.86 1.00 1.68 25.33 0.00 1.38 69 E8_Aa NovelBoundary 0 0.00 0.00 1.45 7.49 12.31 0.00 2.21 4.68 2.23 4.65 2.58 0.00 0.00 5.24 0.00 20.17 9.44 2.57 9.51 2.88 22.36 0.00 0.00 70 ER8a ExonRegion 0 71.14 93.74 179.12 175.05 69.83 94.21 54.61 112.35 150.39 157.39 98.36 44.82 33.85 103.98 151.75 65.21 66.94 139.04 103.74 94.07 67.81 53.48 67.35 71 E8_Da KnownBoundary 0 110.46 42.49 41.04 38.82 47.71 50.82 56.75 20.33 23.50 18.13 0.00 5.40 12.17 5.00 17.55 13.07 4.49 29.76 35.48 18.15 2.35 3.12 16.73 72 E8_Db KnownBoundary 0 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 E8_Dc KnownBoundary 0 25.49 34.14 69.10 69.22 13.33 42.76 9.80 23.62 24.10 26.03 6.58 5.85 12.82 4.71 0.00 3.25 0.00 21.27 0.00 9.08 2.35 2.33 7.17 74 ER8b ExonRegion 1 98.87 56.07 57.07 60.75 47.78 66.28 55.61 34.82 40.94 23.27 5.80 1.86 22.78 5.34 14.09 15.71 0.00 54.11 20.48 23.10 0.63 5.36 18.46 75 ER8c ExonRegion 1 94.40 59.79 51.47 53.70 48.16 56.48 50.31 25.58 42.98 23.40 9.28 4.33 23.45 10.07 3.48 20.80 0.00 34.00 19.11 24.68 3.97 6.25 17.62 76 ER8d ExonRegion 0 52.35 46.59 33.52 36.34 25.03 31.70 33.16 22.74 42.21 20.31 19.29 3.27 27.10 14.04 15.02 10.11 3.01 21.47 10.19 27.94 6.76 5.65 15.34 77 E8_Dd KnownBoundary 0 10.59 11.45 4.49 12.35 4.24 5.17 6.32 3.90 20.31 14.08 13.00 0.00 0.00 0.00 0.00 0.00 4.58 2.03 0.00 18.28 2.78 0.00 3.93 78 E8_De KnownBoundary 0 0.00 2.83 3.78 1.50 4.33 0.00 0.00 5.79 19.30 3.98 9.53 0.00 0.00 2.24 0.00 0.00 3.83 3.61 0.00 16.43 2.78 2.45 3.67 79 ER8e ExonRegion 1 16.93 21.35 15.93 26.58 10.70 3.67 17.21 21.61 41.38 14.91 22.23 0.00 11.73 5.68 24.66 1.49 6.60 9.24 14.33 34.04 6.61 6.25 8.81 80 ER8f ExonRegion 0 1.09 8.21 8.61 6.62 12.68 6.02 6.57 23.26 22.01 19.75 12.81 4.13 0.83 10.00 9.35 2.30 2.60 19.75 20.58 15.25 2.83 2.91 7.73 81 IG27 Intergenic 0 0.50 5.01 7.54 3.23 5.10 4.22 2.73 12.89 14.48 14.12 7.68 1.70 0.31 7.35 4.09 3.07 1.05 17.95 5.82 9.13 1.57 1.82 1.40 82 IG27_AR1 ActiveIntergenicRegion 0 0.51 5.02 7.57 3.24 5.12 4.23 2.74 12.93 14.52 14.16 7.70 1.70 0.31 7.38 4.11 3.08 1.05 18.01 5.83 9.16 1.58 1.83 1.40