Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IL6 Gene 0 16.16 0.00 3.34 0.19 4.74 0.10 1.21 10.35 7.50 0.50 8.16 65.94 11.78 3.38 2.32 9.45 4.95 0.00 0.00 0.00 2.62 1069.06 764.67 2 404625 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.00 3 426291 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 448794 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 401651 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 258743 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 485300 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 407492 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 401630 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 406575 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 420258 Transcript 0 12.14 0.00 0.26 0.00 2.82 0.00 1.68 1.49 1.47 0.00 2.56 30.98 6.91 1.34 0.58 4.19 1.16 0.00 0.00 0.00 1.71 295.18 254.05 12 464710 Transcript 0 3.96 0.00 0.03 0.01 0.41 0.00 0.01 2.44 2.55 0.45 2.25 24.26 3.09 1.41 0.58 0.06 0.92 0.00 0.00 0.00 0.17 213.09 182.09 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 2.00 14 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 15 Ix Intron 0 1.76 0.00 0.43 0.00 1.59 0.00 0.00 0.31 0.44 0.00 2.30 15.65 0.46 0.55 0.00 0.00 0.39 0.00 0.38 0.00 0.00 1.49 2.44 16 Ix_AR2 ActiveIntronRegion 0 1.78 0.00 0.51 0.00 1.90 0.00 0.00 0.00 0.00 0.00 2.45 19.01 0.00 1.17 0.00 0.00 0.00 0.00 1.62 0.00 0.00 1.58 0.23 17 Ix_SR1 SilentIntronRegion 0 2.64 0.00 0.62 0.00 1.62 0.00 0.00 0.60 0.86 0.00 3.38 18.07 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 3.30 18 E2_Aa NovelBoundary 0 18.60 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.51 0.00 0.00 0.00 7.18 0.00 0.00 0.00 0.00 0.00 0.00 19.80 19 ER2a ExonRegion 0 4.87 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.13 107.77 20 E2_Ab KnownBoundary 0 10.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.60 196.51 21 E2_Ac KnownBoundary 0 14.37 0.00 0.00 0.00 8.66 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 97.30 180.88 22 ER2b ExonRegion 0 20.36 0.00 0.00 0.00 7.14 0.00 0.00 2.06 0.00 0.00 6.26 2.89 0.00 0.00 0.00 0.00 2.83 0.00 0.00 0.00 0.00 220.75 423.30 23 E2_Ad KnownBoundary 0 18.74 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 8.05 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 236.67 342.22 24 E2_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.09 0.00 0.00 0.00 12.60 0.00 0.00 4.45 4.27 0.00 0.00 0.00 0.00 0.00 135.88 134.36 25 ER2c ExonRegion 0 25.25 0.00 0.88 0.00 8.03 0.00 0.00 3.83 0.18 0.00 9.94 9.90 0.00 0.70 1.45 4.88 4.72 0.00 0.00 0.00 0.79 391.85 736.68 26 E2_Af KnownBoundary 0 113.50 0.00 5.32 0.00 0.00 0.00 2.03 17.58 12.38 0.00 46.43 0.00 5.84 12.36 13.35 68.44 28.24 0.00 0.00 0.00 18.10 3957.64 6479.74 27 ER2d ExonRegion 0 45.29 0.00 2.45 0.00 5.89 0.00 0.00 13.83 8.28 0.00 25.51 12.99 0.00 5.03 4.64 32.99 19.48 0.00 0.00 0.00 9.48 1704.32 3042.36 28 ER2e ExonRegion 0 76.06 0.00 4.98 0.00 8.86 0.00 4.39 20.63 16.75 0.00 39.26 17.32 2.64 9.74 11.42 55.73 21.66 0.00 0.00 0.00 13.22 3398.48 4996.51 29 E2_Ag KnownBoundary 1 14.08 0.00 4.52 0.00 4.24 0.00 6.32 4.19 7.64 0.00 10.11 37.66 12.66 0.00 0.00 7.52 0.00 0.00 0.00 0.00 0.00 828.43 549.57 30 ER2f ExonRegion 0 69.02 0.00 6.13 0.00 8.03 0.00 5.30 20.52 17.29 0.00 37.99 19.95 4.69 7.98 7.32 57.50 19.66 0.00 0.00 0.00 12.93 3379.20 4857.46 31 E2_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 0.00 0.00 0.00 0.00 0.00 14.39 33.46 32 E2a_E2h KnownJunction 0 0.00 0.00 4.88 0.00 0.00 0.00 0.00 18.89 10.45 0.00 0.00 12.60 0.00 0.00 0.00 3.59 0.00 0.00 0.00 0.00 0.00 77.46 144.52 33 E2a_E2i KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 5.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 8.54 35 ER2g ExonRegion 0 30.92 0.00 6.13 0.00 6.54 0.00 4.34 17.67 17.29 0.00 17.07 18.52 2.87 0.63 0.00 23.45 3.30 0.00 0.00 0.00 3.31 1628.50 1895.11 36 ER2h ExonRegion 0 2.87 0.00 0.04 0.00 0.31 0.00 0.00 0.10 0.96 0.00 0.02 6.19 0.03 0.01 0.00 2.66 0.43 0.00 0.00 0.00 0.69 57.78 51.27 37 E2_Ah KnownBoundary 0 14.45 0.00 0.00 0.00 4.16 0.00 0.00 1.93 1.50 0.00 0.00 6.30 0.00 0.00 0.00 14.95 4.58 0.00 0.00 0.00 0.00 120.32 168.25 38 ER2i ExonRegion 0 15.55 0.00 1.85 0.00 2.29 0.00 0.00 3.86 4.12 0.00 8.63 18.70 7.88 1.18 0.00 6.89 4.93 0.00 0.00 0.00 1.28 222.39 341.25 39 E2_Ai KnownBoundary 0 25.04 0.00 1.74 0.00 4.33 0.00 0.00 2.38 3.12 0.00 13.74 12.60 13.64 0.00 0.00 0.00 17.77 0.00 0.00 0.00 8.03 361.71 413.84 40 ER2j ExonRegion 1 17.14 0.00 6.49 1.24 4.27 0.77 2.05 14.10 15.17 0.00 20.99 56.39 8.57 6.47 4.03 18.27 12.36 0.00 0.00 0.00 8.67 2133.95 2251.60 41 E2b_E3b KnownJunction 0 17.34 0.00 5.74 2.06 16.21 0.00 2.12 14.70 11.63 0.00 15.53 36.01 0.00 0.00 13.23 15.04 8.98 0.00 0.00 0.00 0.00 1008.09 2006.37 42 I2 Intron 0 5.15 0.00 1.32 0.00 0.00 0.00 0.72 0.23 0.33 0.00 1.74 8.66 0.70 1.21 0.43 4.82 0.00 0.00 0.00 0.00 0.60 211.20 165.39 43 I2_SR1 SilentIntronRegion 0 4.70 0.00 1.28 0.00 0.00 0.00 0.62 0.30 0.43 0.00 1.81 10.19 0.91 1.28 0.56 5.04 0.00 0.00 0.00 0.00 0.31 239.87 182.40 44 E3_Aa NovelBoundary 1 9.56 0.00 0.00 0.00 8.32 0.00 0.00 0.00 1.79 1.58 7.74 34.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 646.32 491.69 45 ER3a ExonRegion 0 3.96 0.00 0.03 0.01 0.41 0.00 0.01 2.44 2.55 0.45 2.25 24.26 3.09 1.41 0.58 0.06 0.92 0.00 0.00 0.00 0.17 213.09 182.09 46 E3_Ab KnownBoundary 0 20.67 0.00 0.00 0.00 4.33 0.00 0.00 2.55 3.53 0.00 7.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 208.26 233.72 47 ER3b ExonRegion 0 24.89 0.00 16.31 1.41 10.35 0.00 2.11 33.74 27.49 1.82 24.05 252.22 32.08 13.15 3.93 34.80 14.93 0.00 0.00 0.00 7.22 3372.19 2804.18 48 E3a_E4a KnownJunction 0 18.23 0.00 4.26 0.00 14.26 0.00 6.09 55.24 44.59 1.67 24.27 194.46 14.61 4.53 0.00 29.65 41.33 0.00 0.00 0.00 5.50 4183.11 2546.47 49 ER4a ExonRegion 0 30.06 0.00 16.50 0.00 14.96 0.36 2.52 36.80 29.90 3.10 33.08 265.23 39.10 6.67 10.31 20.12 19.26 0.00 0.00 0.00 7.65 2787.64 2309.17 50 E4_Da KnownBoundary 0 9.93 0.00 5.80 0.00 13.75 2.27 2.21 41.69 21.56 1.21 7.48 126.64 6.82 0.00 0.00 17.77 4.21 0.00 0.00 0.00 4.88 1836.15 1435.38 51 E4_Db KnownBoundary 0 10.82 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.67 2.68 6.30 14.93 2.47 0.00 0.00 0.00 0.00 0.00 0.00 3.03 126.39 176.10 52 E4b_E5a KnownJunction 0 166.03 0.00 9.88 0.00 39.90 2.44 4.46 59.89 34.66 0.00 41.22 432.74 103.89 25.13 9.64 108.26 46.47 0.00 0.00 0.00 9.02 8050.92 6655.16 53 ER4b ExonRegion 0 94.92 0.00 8.67 0.00 31.08 1.83 3.97 51.32 28.50 2.29 38.36 398.64 79.01 24.24 6.70 80.93 39.86 0.00 0.00 0.00 11.19 6253.12 5266.30 54 ER4c ExonRegion 0 8.33 0.00 0.80 0.00 4.74 0.00 1.13 2.37 0.89 0.34 3.21 19.04 3.24 1.47 0.83 2.41 0.00 0.00 0.00 0.00 3.41 198.66 219.25 55 E4_Dc KnownBoundary 0 7.04 0.00 1.30 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.97 75.29 56 E4_Dd KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.48 17.41 57 E4_De KnownBoundary 0 3.78 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 124.43 89.97 58 E4_Df KnownBoundary 0 10.22 0.00 0.00 0.00 3.40 0.00 0.00 0.00 1.74 0.00 2.47 31.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 197.29 186.95 59 ER4d ExonRegion 1 6.35 0.00 1.23 0.00 9.37 0.00 0.00 1.73 2.47 0.00 3.87 17.32 4.69 4.87 0.00 0.00 0.00 0.00 0.00 0.00 2.20 254.19 211.44 60 ER4e ExonRegion 0 8.89 0.00 0.90 0.00 7.14 0.00 0.00 1.73 1.32 0.00 2.45 17.61 4.69 3.90 0.00 0.00 0.00 0.00 0.00 0.00 2.20 276.27 231.41 61 ER4f ExonRegion 0 7.76 0.00 0.00 0.00 8.92 0.00 0.00 1.73 1.85 0.00 3.87 30.31 2.74 3.25 0.00 0.00 0.00 0.00 0.00 0.00 4.77 288.39 246.43 62 ER4g ExonRegion 0 12.14 0.00 0.26 0.00 2.82 0.00 1.68 1.49 1.47 0.00 2.56 30.98 6.91 1.34 0.58 4.19 1.16 0.00 0.00 0.00 1.71 295.18 254.05 63 E4_Dg NovelBoundary 0 13.85 0.00 0.00 0.00 0.00 8.01 0.00 4.19 3.10 0.00 0.00 38.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 274.75 249.69 64 I4 Intron 0 15.55 0.00 0.26 0.00 2.65 0.00 1.68 1.82 0.78 0.48 1.64 22.92 2.73 0.76 0.70 5.46 1.87 0.00 0.00 0.00 1.87 400.31 344.35 65 I4_AR1 ActiveIntronRegion 0 15.64 0.00 0.26 0.00 2.66 0.00 1.69 1.83 0.78 0.49 1.65 23.05 2.74 0.76 0.70 5.49 1.88 0.00 0.00 0.00 1.88 402.48 346.26 66 E5_Aa NovelBoundary 0 49.64 0.00 1.83 1.93 12.56 0.00 4.06 4.68 0.00 0.00 0.00 20.41 12.99 3.00 11.50 4.36 0.00 0.00 0.00 0.00 9.08 794.01 545.56 67 ER5a ExonRegion 0 42.97 0.00 8.24 0.00 11.80 0.29 1.68 33.57 21.57 0.83 20.66 155.64 31.87 10.20 9.26 26.54 16.76 0.00 0.00 0.00 4.62 2747.48 1919.17 68 E5_Da KnownBoundary 0 38.97 0.00 6.62 0.00 20.29 2.78 1.99 28.96 10.88 1.67 10.37 99.93 47.24 16.89 4.45 17.43 4.77 0.00 0.00 0.00 3.15 2771.06 950.95 69 ER5b ExonRegion 1 24.01 0.00 6.65 0.55 13.61 0.94 3.63 25.43 10.97 3.44 5.63 116.15 23.85 9.14 1.99 8.92 2.17 0.00 0.00 0.00 1.26 2775.31 561.57 70 E5_Db KnownBoundary 0 23.26 0.00 4.85 1.50 7.39 0.00 9.54 12.49 7.52 4.62 2.21 120.49 0.00 4.94 4.45 0.00 0.00 0.00 0.00 0.00 0.00 2669.05 282.47 71 ER5c ExonRegion 1 17.50 0.00 3.59 0.73 4.82 0.00 1.00 14.11 6.86 0.98 2.63 96.02 19.29 2.34 1.08 4.68 0.00 0.00 0.00 0.00 0.86 1912.21 109.35 72 ER5d ExonRegion 0 3.78 0.00 0.61 0.00 2.29 0.00 0.00 0.00 0.26 0.00 0.00 20.10 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 97.48 3.78