Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TWIST1 Gene 0 29.20 218.26 98.48 138.23 4.43 231.02 197.67 4.78 0.79 3.34 0.00 0.00 0.00 0.03 0.00 0.07 0.00 173.01 13.35 52.47 263.00 465.47 312.31 2 242261 Transcript 0 29.82 246.77 95.22 131.10 4.14 240.22 204.43 3.15 0.46 4.91 0.00 0.00 0.00 0.00 0.00 0.06 0.00 141.23 13.56 47.41 218.24 398.96 295.78 3 354786 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 354571 Transcript 0 0.00 3.52 0.00 0.00 0.00 28.58 8.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 0.00 3.33 3.92 19.48 11.90 5 443687 Transcript 0 2.02 12.97 0.24 5.11 0.30 22.78 12.19 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.01 9.41 32.63 7.34 22.92 6 IG9 Intergenic 0 2.36 22.02 21.24 37.96 0.51 22.02 13.02 0.12 0.35 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.91 3.92 22.83 14.56 12.98 11.90 7 IG9_AR1 ActiveIntergenicRegion 0 4.12 35.87 28.34 61.52 0.65 30.29 19.09 0.00 0.90 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.19 5.92 29.18 15.24 17.87 19.90 8 IG9_SR1 SilentIntergenicRegion 0 1.28 13.98 18.35 24.42 0.46 18.28 9.78 0.22 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.02 2.94 20.26 15.32 10.54 7.46 9 ER1a ExonRegion 0 0.61 5.23 12.11 8.17 0.00 28.59 4.34 0.74 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.99 2.63 12.05 88.27 26.99 61.74 10 E1_Ab KnownBoundary 0 0.00 6.71 7.72 8.79 0.00 24.93 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 102.93 4.24 8.31 212.08 10.72 154.25 11 ER1b ExonRegion 0 0.81 2.40 10.83 2.02 0.00 11.70 3.25 0.98 0.69 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.80 2.31 13.66 196.39 28.21 66.07 12 E1_Da KnownBoundary 0 0.00 2.96 3.46 4.66 0.00 4.37 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.66 4.52 8.56 74.87 29.15 82.29 13 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 0 0.00 5.03 0.53 1.24 0.00 14.20 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.32 1.45 4.41 126.49 11.10 70.53 15 E1_Ac KnownBoundary 0 0.00 9.80 0.00 0.00 0.00 21.75 4.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.62 0.00 3.26 109.65 6.25 81.69 16 E1_Ad KnownBoundary 0 0.00 22.23 0.00 3.56 0.00 42.76 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 114.08 4.52 3.20 105.33 12.06 86.99 17 ER1d ExonRegion 0 0.00 30.69 1.23 1.36 0.00 53.01 7.94 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.46 3.19 4.84 209.35 12.12 109.46 18 E1_Db KnownBoundary 0 0.00 48.61 5.77 10.29 0.00 60.42 21.20 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.47 0.00 14.70 208.44 20.39 132.31 19 E1b_E1e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER1e ExonRegion 0 0.00 36.29 1.23 1.36 0.00 60.94 12.73 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.38 3.19 8.02 218.34 15.87 106.40 21 ER1f ExonRegion 0 0.85 15.05 2.56 1.31 0.00 21.21 9.51 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.79 0.41 4.06 84.02 16.29 31.88 22 E1_Ae KnownBoundary 0 6.08 35.65 21.76 10.09 0.00 27.20 19.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.24 0.00 0.00 106.13 53.40 41.57 23 ER1g ExonRegion 0 22.03 138.97 88.03 110.79 0.05 191.28 124.09 4.34 0.61 2.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 363.97 11.13 71.59 399.51 287.53 352.14 24 E1_Af KnownBoundary 0 30.82 210.03 202.15 234.24 0.00 354.06 279.24 9.41 1.50 6.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 827.62 16.85 129.50 1072.08 1420.43 1707.77 25 ER1h ExonRegion 0 44.97 287.57 251.49 255.55 2.56 356.45 211.80 9.22 1.35 7.75 0.00 0.00 0.00 0.32 0.00 0.00 0.00 695.87 31.36 149.16 776.28 762.67 747.12 26 E1_Dc KnownBoundary 0 68.53 461.37 276.99 299.43 0.00 639.12 365.05 12.45 1.27 8.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 912.80 31.06 204.47 970.89 1250.27 1395.52 27 ER1i ExonRegion 0 41.57 384.59 179.25 207.68 3.38 427.01 295.31 4.69 0.53 8.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 477.69 18.35 120.92 604.18 646.39 703.89 28 E1_Dd NovelBoundary 0 7.56 52.10 48.40 31.36 0.00 66.10 56.26 0.00 0.00 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90.29 3.76 29.59 145.61 185.48 143.50 29 E1d_E2a KnownJunction 0 50.82 460.44 182.16 212.26 4.33 420.95 323.76 2.01 0.00 13.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 288.14 24.75 94.47 339.47 495.50 510.30 30 E1d_E3a KnownJunction 0 0.00 0.00 1.33 1.66 4.33 37.71 2.25 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.51 0.00 0.00 82.35 31.17 49.85 31 E1d_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 2.84 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 28.29 2.82 8.54 32 I1 Intron 0 8.61 83.44 94.89 80.39 1.55 118.90 72.52 2.24 0.53 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 161.32 4.62 28.41 167.57 299.02 289.60 33 I1_SR1 SilentIntronRegion 0 8.66 83.92 95.43 80.84 1.56 119.58 72.93 2.26 0.54 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 162.24 4.65 28.58 168.53 300.73 291.25 34 E2_Aa NovelBoundary 0 10.08 99.13 49.70 80.54 3.82 79.78 68.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.95 3.58 0.00 59.99 117.20 138.37 35 ER2a ExonRegion 0 67.86 516.37 186.06 302.73 12.22 497.12 486.48 9.83 1.56 6.58 0.00 0.00 0.00 0.00 0.00 0.23 0.00 170.47 25.42 78.72 318.71 1062.26 540.54 36 I2 Intron 0 2.97 43.66 8.88 21.98 0.70 40.90 33.35 1.02 0.24 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.14 6.71 1.45 34.14 14.02 37 I2_SR1 SilentIntronRegion 0 2.97 43.73 8.90 22.02 0.70 40.97 33.41 1.02 0.24 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.14 6.72 1.45 34.20 14.05 38 ER3a ExonRegion 0 3.20 13.46 1.23 3.83 1.42 43.15 12.03 0.70 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.63 3.19 10.73 67.56 30.90 40.74 39 E3_Da NovelBoundary 0 19.71 35.19 11.03 38.06 0.00 56.33 53.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.45 0.00 0.00 0.00 49.54 43.88 40 E3a_E4a KnownJunction 0 0.00 6.18 0.00 0.00 0.00 36.34 9.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 5.50 5.68 30.07 16.30 41 E3a_E5a KnownJunction 0 7.48 25.39 0.00 8.99 0.00 47.53 16.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 17.39 56.40 5.82 35.00 42 ER4a ExonRegion 0 0.00 0.87 0.00 0.00 0.00 20.82 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 1.15 2.16 8.89 7.50 43 ER5a ExonRegion 0 0.59 26.51 0.95 8.63 1.19 41.89 27.48 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.17 0.03 18.30 64.42 18.77 46.25 44 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 4.18 45 ER6a ExonRegion 0 0.00 0.00 0.00 2.81 0.00 1.69 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 6.59 4.79 6.27 46 IG8 Intergenic 0 4.11 54.56 2.74 13.46 11.44 84.63 27.31 9.16 7.83 18.48 0.03 2.55 0.86 0.03 0.59 0.03 0.91 4.25 3.20 24.57 11.76 16.05 11.21 47 IG8_AR2 ActiveIntergenicRegion 0 13.72 143.80 7.64 23.91 29.92 190.78 52.71 25.67 18.44 46.19 0.05 3.47 0.85 0.05 1.95 0.00 1.84 8.25 7.91 45.69 18.94 22.59 16.05 48 IG8_SR2 SilentIntergenicRegion 0 7.43 130.71 4.52 37.41 23.00 193.23 65.54 19.05 18.31 39.15 0.00 3.96 3.78 0.14 0.79 0.00 2.68 13.13 9.21 62.72 32.56 50.86 34.30 49 IG8_AR1 ActiveIntergenicRegion 0 2.70 52.18 2.99 25.58 15.87 152.96 53.06 10.95 11.47 30.44 0.12 7.32 2.33 0.04 0.54 0.19 2.11 7.97 4.28 47.23 28.51 37.77 26.70 50 IG8_SR1 SilentIntergenicRegion 0 2.33 54.01 1.35 22.47 12.57 107.75 41.18 9.20 10.76 16.83 0.00 7.00 2.13 0.00 0.00 0.00 0.00 3.79 3.77 43.64 7.44 34.50 18.92