Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HNRNPA2B1 Gene 0 1075.61 915.30 936.95 864.17 1501.82 966.29 1383.28 905.67 571.49 947.20 1583.95 1448.37 850.62 2042.76 1517.89 1157.78 1495.45 671.73 573.41 918.64 350.19 677.97 392.93 2 490912 Transcript 0 2.84 4.09 4.72 3.64 5.31 7.65 6.90 4.34 2.19 9.30 9.06 2.37 0.16 7.96 5.36 10.98 2.77 10.44 8.60 10.08 3.78 5.27 2.14 3 463181 Transcript 0 969.04 558.25 525.27 933.82 1755.60 1118.78 1452.40 840.35 599.99 648.87 1171.56 1018.91 639.25 1175.72 732.67 854.50 898.56 455.42 524.63 698.91 259.70 594.09 405.35 4 409814 Transcript 0 0.00 0.00 1.83 2.06 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 356674 Transcript 1 367.03 410.58 1092.84 822.91 607.90 446.79 446.09 1033.42 889.23 1831.82 7394.56 562.68 455.16 2835.38 1685.77 1306.41 6397.94 1580.99 1019.70 2289.32 2137.68 706.33 471.12 6 360787 Transcript 1 188.03 109.32 278.32 303.22 419.02 452.52 465.83 135.42 136.02 98.96 190.89 85.83 40.58 236.27 284.20 238.40 243.10 50.12 148.15 79.83 48.43 82.85 102.86 7 354667 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 495810 Transcript 0 83.86 58.97 106.41 84.97 104.04 25.85 159.29 121.16 66.06 61.31 116.43 74.15 96.23 97.68 89.21 129.41 149.81 42.58 33.69 43.42 28.50 92.54 42.33 9 476233 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 2.84 4.09 4.72 3.64 5.31 7.65 6.90 4.34 2.19 9.30 9.06 2.37 0.16 7.96 5.36 10.98 2.77 10.44 8.60 10.08 3.78 5.27 2.14 11 E1_Ab KnownBoundary 0 3.78 52.75 13.60 17.35 51.10 34.58 39.53 12.82 7.00 25.09 29.48 0.00 17.86 43.20 0.00 19.05 34.03 24.08 24.47 37.01 14.09 6.25 3.93 12 ER1b ExonRegion 0 6.13 24.24 64.30 19.91 33.87 16.94 29.23 33.48 31.92 84.84 58.60 9.11 12.34 71.46 104.06 19.55 35.09 9.14 21.46 37.74 15.02 11.19 4.17 13 E1_Ac KnownBoundary 0 34.82 8.09 271.01 121.40 43.89 20.05 96.76 150.04 147.39 331.40 96.08 0.00 0.00 45.15 60.94 23.41 59.09 25.70 15.34 154.68 21.56 11.70 22.28 14 ER1c ExonRegion 1 1136.50 958.28 956.62 558.51 1040.08 1224.80 1466.56 832.36 684.56 1355.30 2895.47 484.38 347.79 2892.12 1731.03 1947.14 3220.97 569.39 854.79 1433.54 1178.91 518.33 740.29 15 E1_Da KnownBoundary 0 10.08 0.00 44.74 14.92 4.33 27.54 12.59 56.72 74.91 83.22 291.34 13.05 20.94 153.22 56.74 115.78 469.47 91.28 107.30 90.00 172.30 35.76 56.51 16 E1a_E1d KnownJunction 1 72.53 105.38 385.35 116.00 108.40 55.88 71.76 168.07 178.90 318.37 1455.00 287.04 145.61 1229.86 510.17 470.39 1749.69 179.74 188.43 423.58 514.42 186.58 84.68 17 E1a_E1e KnownJunction 1 367.03 410.58 1092.84 822.91 607.90 446.79 446.09 1033.42 889.23 1831.82 7394.56 562.68 455.16 2835.38 1685.77 1306.41 6397.94 1580.99 1019.70 2289.32 2137.68 706.33 471.12 18 ER1d ExonRegion 1 73.20 64.26 60.71 45.83 116.30 110.02 143.83 116.57 98.91 98.88 169.47 271.61 211.48 248.66 81.09 161.15 205.11 65.61 56.30 89.23 58.79 100.05 79.63 19 E1_Ad KnownBoundary 0 164.70 67.09 87.28 54.24 163.84 134.87 192.90 119.81 91.61 106.64 149.46 566.43 358.09 219.97 69.47 133.04 151.00 18.03 22.02 44.68 39.48 114.38 56.51 20 ER1e ExonRegion 0 214.07 191.10 671.54 257.66 382.25 254.16 320.81 501.15 369.76 641.74 1575.48 917.35 523.54 2277.90 927.16 1055.95 1916.97 492.66 372.41 626.87 455.35 520.17 282.34 21 E1_Db KnownBoundary 0 145.29 72.29 63.33 78.08 156.54 97.78 162.34 176.91 67.42 128.27 226.06 285.54 233.75 249.46 61.93 187.39 217.11 21.64 58.07 36.11 27.68 153.02 71.88 22 E1b_E1e KnownJunction 0 157.88 141.75 646.52 213.39 431.07 220.27 271.91 412.10 295.80 514.30 1041.11 611.30 263.46 2924.97 1419.37 1401.51 1402.99 594.23 474.27 699.38 270.89 613.56 402.74 23 ER1f ExonRegion 0 135.99 54.95 86.80 93.20 197.30 144.28 182.84 175.48 104.54 156.21 290.75 330.79 224.46 238.63 106.03 148.28 272.61 62.45 52.12 93.90 57.10 124.38 73.45 24 E1_Ae KnownBoundary 0 262.79 63.74 62.18 108.94 246.26 164.79 286.66 193.46 107.87 127.41 232.01 377.52 279.04 206.66 75.41 118.43 223.66 38.72 40.00 90.31 60.36 101.83 65.99 25 ER1g ExonRegion 0 1340.22 1176.04 2530.74 1865.22 3257.24 2099.77 2443.55 2260.21 1625.41 2933.48 6347.85 3210.65 2354.52 9288.21 5105.65 8287.40 6249.53 5868.96 3336.23 3539.60 1761.14 1798.00 2967.96 26 E1c_E2a KnownJunction 0 3281.84 2079.56 3248.47 2137.26 7763.08 5619.83 5537.03 2533.45 1774.58 3048.46 6184.93 3838.85 2698.04 9806.57 4942.22 4309.98 6650.76 4464.53 1927.96 3426.22 1972.00 1540.82 1651.01 27 ER2a ExonRegion 0 3227.96 3205.68 3052.36 2281.10 4221.11 3725.17 4857.32 2400.14 1774.00 3213.52 7259.42 5749.77 3300.38 10434.88 4859.80 4281.54 7243.80 3460.37 1958.76 3630.45 2137.37 2033.22 1235.91 28 E2a_E3a KnownJunction 0 7281.74 4220.89 4292.78 3125.21 5606.28 4222.74 5684.09 3246.90 2253.45 4132.74 8495.47 6108.34 3818.91 12355.82 6818.12 5444.21 9200.36 3791.62 2410.89 4414.25 2335.80 2493.49 1559.84 29 ER3a ExonRegion 0 3828.82 2536.97 3883.55 3101.69 6248.21 3851.65 5735.98 2928.42 2170.06 3888.75 8484.82 7989.97 5244.55 12743.02 6285.24 5650.47 8093.26 3848.20 2565.71 4231.36 1751.51 2752.03 1603.27 30 E3_Ab KnownBoundary 1 3613.38 2708.20 4768.22 3912.49 8141.77 4367.77 6933.02 3534.63 2377.38 4244.24 7722.85 13130.63 7248.39 14130.51 8120.79 7069.26 6912.47 3684.34 3026.16 4649.98 851.17 3057.45 1896.77 31 ER3b ExonRegion 0 2835.65 2165.23 4071.33 3105.48 5076.43 3203.21 4386.75 3305.69 2172.74 4113.87 8369.61 10306.21 6250.03 11902.08 7175.93 5936.05 8080.73 3757.81 2601.17 4549.47 1095.88 2534.46 1691.01 32 E3a_E4a KnownJunction 0 2272.55 2460.81 4105.56 3037.78 4026.91 2732.35 4091.98 3174.20 2073.16 4142.62 7182.40 7781.54 5037.66 11640.12 7325.56 4885.47 6948.66 3472.43 2452.21 4420.38 1296.03 2362.51 1617.46 33 ER4a ExonRegion 0 4133.23 2899.05 4580.80 3286.08 5760.20 4108.01 6048.98 3341.97 2226.42 4125.39 7808.89 8359.52 5365.30 11715.16 6527.08 5422.73 8140.56 3849.99 2830.13 4392.31 1718.57 2425.28 1592.38 34 E4a_E5a KnownJunction 0 3971.30 2779.97 4471.78 2737.51 5932.35 3935.69 5730.38 3095.63 1996.25 3816.60 6713.38 8969.92 4482.50 10069.57 5775.40 5114.98 7275.63 4178.50 2354.70 4154.30 1815.27 1959.23 1488.65 35 E4a_E7b NovelJunction 1 1086.49 628.84 1506.72 709.87 1090.75 802.15 1263.05 829.28 682.17 1376.68 1349.92 202.27 267.68 1177.65 1149.64 1270.78 1994.01 1163.85 466.93 1563.61 504.35 427.35 415.97 36 ER5a ExonRegion 0 3084.03 2258.03 3823.70 2311.02 5560.70 3897.09 5529.50 2583.65 1732.82 3242.60 4950.03 7684.59 5356.88 10594.07 6758.06 4751.04 5701.38 2824.05 2125.70 4104.08 1689.21 1536.33 1447.15 37 E5a_E6a KnownJunction 0 4115.54 2221.31 4305.02 2688.87 5792.87 3862.78 6227.30 2509.71 1785.40 3240.71 4897.08 4113.59 3963.54 10376.47 4881.28 4675.53 5269.93 3353.91 2465.67 4111.79 1673.12 1670.27 1401.24 38 E5a_E7b KnownJunction 0 0.00 0.00 1.83 2.06 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6a ExonRegion 0 2757.02 1582.45 3803.69 2382.80 3809.58 2668.99 3913.02 2168.72 1648.86 2978.33 4372.59 3365.78 2940.05 8949.93 5522.24 4063.46 4878.78 2785.20 2372.34 3504.04 1511.04 1552.35 1395.51 40 E6_Da KnownBoundary 0 45.79 48.48 143.25 131.78 71.39 19.31 122.64 159.57 104.19 102.64 145.88 72.62 105.03 155.75 83.32 181.75 219.82 79.22 73.88 51.45 71.60 116.89 65.22 41 E6a_E7a KnownJunction 0 3265.02 2068.97 3596.71 2226.36 4081.75 3195.66 4370.39 1938.74 1532.48 2778.01 5107.93 2747.85 2602.26 8753.82 6473.84 4940.41 5631.69 3230.38 2843.38 3213.24 1591.01 1739.22 1765.65 42 ER6b ExonRegion 0 83.86 58.97 106.41 84.97 104.04 25.85 159.29 121.16 66.06 61.31 116.43 74.15 96.23 97.68 89.21 129.41 149.81 42.58 33.69 43.42 28.50 92.54 42.33 43 I6_AR1 ActiveIntronRegion 0 114.33 50.67 148.36 87.85 188.04 37.21 172.63 174.46 107.46 88.69 125.59 196.37 183.30 96.13 120.09 102.90 172.46 35.48 37.42 56.25 27.64 85.67 52.79 44 I6_SR1 SilentIntronRegion 0 89.74 57.48 49.37 44.93 55.90 12.39 41.49 68.06 38.45 35.71 71.26 48.51 19.16 143.65 122.27 153.40 170.37 36.15 84.16 27.45 46.09 52.49 111.88 45 ER7a ExonRegion 0 2197.17 1444.33 3061.62 1685.83 2827.97 2247.92 3046.09 1638.27 1364.45 2600.71 3887.86 1781.29 1684.64 7335.58 5095.61 3836.37 4961.25 2373.80 1857.21 2860.91 1379.00 1332.64 1287.65 46 E7_Ab KnownBoundary 1 2491.18 1541.37 2970.36 1539.23 2754.84 1954.39 3000.81 1661.57 1382.60 2671.85 3368.01 1070.60 854.16 4973.60 4503.13 3282.22 4594.67 2193.80 1339.71 3052.68 1143.31 1108.63 1109.98 47 ER7b ExonRegion 1 3600.22 2181.87 3364.50 1703.40 3837.53 3224.61 4610.19 1908.38 1550.64 2952.58 4024.35 1346.99 1448.46 7284.09 5722.64 4688.17 5634.94 3107.02 1877.90 3442.86 1416.42 1418.31 1442.92 48 E7a_E8a KnownJunction 1 3794.52 2907.97 3120.20 2036.94 5045.84 4178.45 6272.08 2179.43 1677.36 3252.47 4459.50 1046.44 1309.17 7672.77 6216.22 4742.60 4406.07 2826.00 2245.34 3200.53 1258.34 1936.57 1456.89 49 ER8a ExonRegion 1 4700.96 2926.39 3334.22 2035.42 6495.02 4559.33 6217.29 2309.71 1662.52 3212.04 6567.27 1729.32 1463.18 9319.79 6866.58 6052.70 6443.03 3788.68 3090.22 3406.39 1729.93 2037.24 1994.46 50 E8a_E9a KnownJunction 1 2913.92 1820.60 2938.16 1560.01 3065.11 2253.02 3276.34 1964.37 1376.64 2886.91 5155.04 1884.31 1233.20 7620.91 7225.68 5146.68 4313.69 3119.86 2400.35 2888.86 1290.84 1628.38 1452.03 51 ER9a ExonRegion 0 2442.87 1925.70 3016.36 1756.02 2948.54 2345.52 3175.53 2057.69 1518.60 3120.60 5242.23 2166.04 1479.96 6843.94 7607.78 4518.81 6738.08 2554.35 2193.95 2947.77 1477.81 2215.36 1399.79 52 E9_Da KnownBoundary 0 1100.05 499.52 550.69 1017.49 1881.58 1577.10 1569.19 764.92 600.83 673.56 1155.77 716.48 598.18 1297.55 785.46 1051.69 999.91 627.11 711.46 827.15 442.20 585.09 578.25 53 E9a_E9b KnownJunction 0 3694.88 2360.11 3620.60 1463.55 4487.10 2756.25 4067.87 2433.19 1378.46 3700.48 6681.74 3318.63 1645.18 8975.56 7922.02 5985.01 10087.60 2532.35 2979.00 3458.05 1287.01 2393.49 1671.84 54 E9a_E9d KnownJunction 0 188.03 109.32 278.32 303.22 419.02 452.52 465.83 135.42 136.02 98.96 190.89 85.83 40.58 236.27 284.20 238.40 243.10 50.12 148.15 79.83 48.43 82.85 102.86 55 E9a_E9e NovelJunction 1 27.56 54.79 129.50 92.30 66.89 13.86 93.45 33.43 17.88 41.93 42.70 5.55 18.99 54.39 50.68 28.45 83.68 43.19 17.60 60.53 12.48 11.57 3.59 56 ER9b ExonRegion 0 969.04 558.25 525.27 933.82 1755.60 1118.78 1452.40 840.35 599.99 648.87 1171.56 1018.91 639.25 1175.72 732.67 854.50 898.56 455.42 524.63 698.91 259.70 594.09 405.35 57 E9_Ab KnownBoundary 1 1393.95 847.55 662.66 1065.17 1751.53 1571.77 2107.31 885.93 657.63 619.81 1064.59 2227.78 1075.25 1222.56 745.41 708.36 770.27 297.51 528.11 843.07 256.50 543.94 382.51 58 ER9c ExonRegion 0 3306.11 2939.46 3474.61 2487.76 5073.57 2771.29 4262.65 3445.07 1846.62 3706.31 5450.40 4474.74 1802.55 4871.36 6355.07 2681.32 3990.16 1181.05 1298.47 2852.72 528.25 3072.87 807.44 59 E9_Db KnownBoundary 1 663.15 707.83 299.63 682.06 1235.40 545.14 928.12 599.35 319.56 396.16 315.29 650.01 246.41 296.66 145.62 178.76 142.50 44.48 118.50 299.77 36.20 384.36 132.82 60 E9_Dc KnownBoundary 1 649.89 537.47 284.85 672.18 1313.33 596.76 1027.00 649.83 316.06 360.94 275.28 663.37 412.64 310.91 204.22 211.31 208.41 49.99 106.54 221.86 29.04 400.90 106.70 61 ER9d ExonRegion 1 1418.07 1382.83 640.13 1363.16 2705.72 1232.68 1997.59 1279.75 674.37 857.88 725.22 1809.72 978.34 1099.53 816.41 419.07 413.93 151.15 268.84 619.57 58.18 879.25 270.76 62 ER9e ExonRegion 1 1338.74 1019.82 590.35 1420.32 2198.30 1198.00 1780.86 1206.29 692.50 748.20 774.75 2009.26 1010.70 888.28 618.32 563.59 528.60 241.77 422.46 557.46 99.98 713.20 296.53 63 E9_Ac KnownBoundary 1 2109.04 1100.00 641.11 1498.11 2982.51 1408.56 2303.00 1315.23 762.81 776.34 1067.53 2037.81 798.16 974.52 746.03 622.74 665.08 276.29 527.45 677.14 189.66 744.91 404.28 64 ER9f ExonRegion 1 2155.83 2226.93 742.35 1625.68 2400.55 1153.97 1885.71 1316.01 729.66 821.31 1011.70 1924.70 856.70 957.67 898.68 708.29 679.79 289.63 617.34 720.47 201.41 842.55 352.50 65 E9_Ad KnownBoundary 1 2265.88 4023.23 667.66 1455.96 3403.48 1378.47 2382.71 974.73 504.42 595.58 758.19 1649.79 1432.05 768.44 990.92 556.52 512.95 192.05 466.65 750.20 178.91 655.44 283.58 66 ER9g ExonRegion 0 2041.58 2860.42 977.27 1641.99 2668.73 1354.04 2032.46 1143.88 649.23 785.77 1258.52 1540.65 821.66 990.70 1185.00 711.50 902.88 244.20 500.81 858.91 317.02 600.70 333.12 67 E9_Dd KnownBoundary 0 1660.52 1081.91 643.09 1198.68 999.83 468.42 955.24 571.01 290.54 352.29 239.06 545.28 344.94 314.09 280.86 302.66 257.60 88.17 174.69 350.65 32.87 171.27 71.53 68 E9d_E9e KnownJunction 0 1152.57 1735.15 546.31 933.41 1214.86 539.23 862.19 748.00 448.43 583.01 923.44 904.94 353.22 576.43 962.11 554.56 602.24 161.21 356.72 585.10 208.00 401.94 172.09 69 ER9h ExonRegion 0 899.98 718.78 536.05 918.83 877.90 610.08 897.45 591.74 315.44 330.77 332.12 461.75 205.47 264.63 357.44 241.29 302.56 95.61 168.48 320.25 33.01 190.76 77.74 70 E9_Ae KnownBoundary 0 670.71 464.00 386.09 670.48 719.19 727.14 922.51 558.11 239.29 278.16 329.35 323.81 220.93 264.41 307.19 155.77 297.80 62.88 137.60 221.98 11.12 126.20 60.27 71 ER9i ExonRegion 0 1621.40 1563.59 1149.67 1780.92 2072.42 1125.80 1553.83 1506.18 768.23 933.27 1195.18 1315.66 722.69 819.36 1167.08 548.07 722.13 206.25 430.06 793.74 196.53 623.41 244.25 72 E9_De KnownBoundary 0 1276.52 945.36 1113.65 1925.66 1729.46 857.01 1267.87 1671.71 788.91 877.90 769.19 1181.64 692.65 821.36 1017.74 350.93 314.54 103.59 337.70 646.71 88.53 993.27 122.75 73 ER9j ExonRegion 1 747.33 740.23 730.82 1289.94 1158.46 715.56 887.02 1044.95 485.20 639.14 300.40 1003.98 689.41 382.68 568.24 173.48 161.10 68.14 179.16 344.67 32.10 530.13 72.76 74 E9_Df KnownBoundary 0 185.81 315.54 225.66 558.54 365.87 251.16 380.77 526.49 252.63 390.79 59.01 555.18 286.51 175.06 211.88 74.94 32.26 24.25 89.98 184.59 8.40 248.00 46.69 75 ER9k ExonRegion 1 155.66 207.74 158.47 377.90 239.80 171.77 209.76 300.05 158.36 226.57 60.39 305.16 203.16 88.98 94.35 37.78 41.34 14.38 57.71 115.69 6.41 107.71 17.10 76 IG34 Intergenic 0 20.14 24.64 15.46 47.09 43.11 73.68 80.03 36.92 40.48 22.71 24.00 39.21 37.73 25.32 19.73 15.60 30.70 36.31 21.74 75.43 5.12 9.73 18.42 77 IG34_AR5 ActiveIntergenicRegion 0 16.08 25.36 20.14 47.74 49.38 69.92 97.17 38.67 43.54 25.91 22.19 65.19 60.30 22.45 17.05 12.29 33.78 24.72 13.49 78.46 3.92 11.99 14.57 78 IG34_AR4 ActiveIntergenicRegion 0 20.93 13.50 25.70 45.66 53.74 92.30 78.19 26.41 35.30 13.73 18.31 79.73 16.81 17.59 11.85 38.80 26.13 21.61 20.44 87.41 0.92 11.05 14.36 79 IG34_SR2 SilentIntergenicRegion 0 1.99 7.00 10.24 17.52 19.28 34.41 45.29 5.39 13.80 7.59 8.75 35.53 6.21 3.10 13.57 14.51 11.75 6.36 12.74 35.23 0.00 4.29 2.85 80 IG34_AR3 ActiveIntergenicRegion 0 21.11 28.41 14.76 50.83 40.25 74.77 76.41 37.81 42.18 25.14 28.38 29.25 29.49 28.70 23.37 17.83 34.28 49.53 27.54 81.03 6.94 9.79 22.57 81 IG34_AR2 ActiveIntergenicRegion 0 40.92 23.05 3.68 20.44 42.25 84.51 59.85 10.37 13.59 8.03 14.01 20.02 40.84 17.26 12.09 15.11 11.83 19.32 44.99 56.74 2.20 4.17 12.24 82 IG34_SR1 SilentIntergenicRegion 0 26.06 11.81 8.39 37.07 42.94 80.73 63.74 36.95 33.24 10.19 14.17 19.02 26.68 22.73 13.82 11.90 14.21 16.48 16.81 52.48 1.93 5.55 13.40