Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	RPA3	Gene	0	51.13	32.12	58.12	41.02	83.77	51.74	91.82	31.54	31.98	43.23	76.71	49.77	21.90	69.26	102.43	74.29	90.79	42.47	33.38	78.83	7.61	19.07	8.53
2	223129	Transcript	0	5.70	4.62	7.58	7.16	9.84	7.89	11.51	4.85	7.25	7.89	3.17	7.97	5.15	3.22	7.03	3.24	4.03	2.60	1.97	10.02	0.70	2.12	1.57
3	396682	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.19	0.00	0.00	0.00	0.00	2.88	0.00	0.00	0.00
4	463632	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	406109	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	402771	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	462723	Transcript	0	28.52	7.25	9.62	6.91	18.31	7.51	33.32	4.37	4.65	1.66	8.26	8.19	5.60	11.72	8.97	7.94	8.54	5.11	2.95	7.89	0.00	0.64	1.82
8	401447	Transcript	0	4.38	2.10	2.29	0.42	2.24	0.38	3.04	1.13	3.07	1.15	5.25	4.05	4.04	4.19	1.03	4.32	4.14	1.73	1.33	8.40	0.00	0.44	0.00
9	483031	Transcript	0	17.76	10.62	13.41	13.09	34.14	12.88	38.07	12.56	9.37	8.70	12.16	22.69	12.83	11.28	13.55	12.93	10.11	2.95	3.68	14.83	0.41	5.26	0.99
10	ER1a	ExonRegion	0	2.32	1.16	0.00	3.34	1.47	0.00	4.36	0.00	0.00	1.76	0.00	0.00	4.24	0.00	3.84	4.89	0.00	0.00	0.00	7.00	0.00	0.00	1.61
11	E1_Da	NovelBoundary	1	3.11	0.00	1.77	6.19	7.30	0.00	21.99	6.65	3.04	2.98	2.11	32.56	6.49	0.00	4.82	7.69	8.23	2.28	0.00	17.13	0.00	0.00	6.74
12	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2_Aa	NovelBoundary	1	3.78	6.05	3.13	7.46	8.06	11.58	21.02	4.11	7.70	1.67	0.00	32.56	0.00	0.00	5.19	0.00	4.30	0.00	0.00	20.20	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.00	1.92	0.00	0.13	0.00	0.28	2.83	0.17	0.00	0.40	0.00	1.50	7.04	0.00	0.00	0.00	0.06	0.00	0.00	0.41	0.00	0.00	0.23
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	Ix_AR6	ActiveIntronRegion	0	14.87	9.16	10.97	27.24	24.95	4.36	19.61	9.77	14.25	7.07	2.02	9.01	7.85	1.80	6.51	7.32	4.19	9.05	3.39	24.27	0.59	1.68	0.79
17	Ix_AR5	ActiveIntronRegion	0	11.19	11.71	3.13	21.41	11.79	8.38	19.38	9.24	10.26	4.44	1.95	5.73	9.15	1.94	3.67	6.31	2.05	3.11	2.32	16.41	0.21	0.69	2.23
18	E3_Aa	NovelBoundary	1	3.48	3.35	0.00	3.13	14.77	0.00	28.79	2.55	1.45	1.07	0.00	0.00	20.13	0.00	0.00	3.42	9.54	4.19	0.00	21.16	0.00	0.00	3.33
19	ER3a	ExonRegion	0	1.07	0.00	0.00	1.01	0.00	10.04	11.93	2.52	0.95	1.66	0.00	10.03	7.80	0.00	1.03	3.00	4.97	0.00	0.00	9.46	1.11	0.00	2.85
20	E3_Da	NovelBoundary	1	0.00	8.75	1.83	7.33	3.57	0.00	10.07	0.00	1.36	0.00	0.00	0.00	29.71	5.42	0.00	7.95	9.07	2.53	0.00	23.65	0.00	0.00	3.84
21	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E4_Aa	NovelBoundary	1	20.08	3.09	3.73	8.12	0.00	0.00	12.28	7.89	9.43	0.00	2.16	25.06	13.47	0.00	5.93	0.00	8.79	1.62	0.00	21.28	0.00	0.00	0.00
23	ER4a	ExonRegion	0	2.55	2.45	1.10	4.25	8.88	1.66	15.19	1.55	4.62	1.53	0.00	6.69	3.50	0.40	0.62	0.90	3.18	2.49	0.96	8.35	0.65	0.00	0.00
24	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix_AR1	ActiveIntronRegion	0	4.45	6.18	2.59	8.54	2.58	0.41	13.34	3.21	2.83	4.61	1.07	2.94	15.31	0.30	0.18	3.41	1.97	0.85	0.00	19.42	0.92	0.00	1.16
26	Ix_AR1	ActiveIntronRegion	0	3.41	4.80	3.28	13.16	4.90	3.91	13.35	4.55	4.46	3.78	0.59	1.09	5.98	0.20	4.69	5.88	3.42	6.08	2.34	21.32	0.00	0.00	1.34
27	ER5a	ExonRegion	0	0.53	0.51	1.83	1.02	2.75	1.13	4.49	2.56	6.41	2.07	1.59	0.89	0.00	2.27	2.49	2.67	2.51	5.94	4.42	13.89	0.00	0.52	0.07
28	E5_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	8.46	6.58	5.09	9.90	1.24	4.21	0.00	0.00	12.54	10.75	7.01	0.00	9.62	4.80	19.81	0.00	0.00	0.00
29	E5_Ac	KnownBoundary	0	6.96	0.00	0.00	0.00	4.33	37.65	16.91	2.34	9.49	3.04	27.95	0.00	0.00	20.31	9.64	45.80	14.31	31.01	4.80	18.09	0.00	0.00	8.37
30	ER5b	ExonRegion	0	3.13	0.00	0.37	0.00	2.68	22.40	13.12	5.94	11.71	3.19	17.14	0.00	0.00	16.59	10.47	29.59	9.90	30.13	6.37	19.24	0.00	0.00	5.11
31	ER5c	ExonRegion	0	1.89	1.24	1.85	0.09	1.75	6.31	8.68	3.31	5.42	2.50	12.63	1.37	1.48	3.43	6.70	11.55	7.74	12.21	3.38	12.30	1.42	0.00	2.38
32	E5_Ad	KnownBoundary	0	8.67	4.87	6.92	0.00	0.00	17.43	8.57	2.42	3.21	0.00	4.95	0.00	0.00	0.00	0.00	4.10	3.46	2.45	0.00	11.63	2.41	2.39	0.00
33	ER5d	ExonRegion	0	0.61	0.61	5.49	1.51	1.06	3.53	6.48	2.75	7.11	3.51	7.27	0.00	0.00	7.54	8.89	11.06	6.99	2.56	3.15	14.41	0.64	0.85	4.58
34	E5_Da	KnownBoundary	0	3.78	7.96	3.58	4.00	0.00	23.62	16.56	0.00	7.12	1.58	2.68	0.00	5.84	4.94	4.57	11.45	8.70	22.88	0.00	3.07	7.78	10.35	38.93
35	E5a_E5f	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.19	0.00	0.00	0.00	0.00	2.88	0.00	0.00	0.00
36	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.90	2.16	2.46	4.28	3.12	2.32	0.00	0.00	0.00	18.42	12.56	3.46	4.27	0.00	11.89	0.00	0.00	0.00
37	ER5e	ExonRegion	0	1.15	2.03	6.66	1.36	0.00	11.17	8.18	0.00	4.86	1.04	2.94	0.00	0.00	1.59	6.13	2.97	4.43	1.72	0.00	7.21	2.00	0.81	10.75
38	E5_Ae	KnownBoundary	0	0.00	0.00	9.05	0.00	0.00	4.37	6.62	0.00	1.56	0.00	4.69	0.00	0.00	0.00	13.97	0.00	4.77	0.00	0.00	8.56	0.00	0.00	3.59
39	ER5f	ExonRegion	0	1.25	2.16	3.16	0.39	3.49	13.27	6.03	0.46	3.31	2.22	4.22	0.71	4.02	4.86	5.33	5.76	5.86	2.75	0.00	8.86	1.15	0.00	0.00
40	E5_Af	KnownBoundary	0	3.78	3.35	0.00	0.00	0.00	0.00	3.36	0.00	2.98	0.00	2.68	0.00	0.00	0.00	8.90	3.59	0.00	1.70	0.00	2.56	0.00	0.00	0.00
41	E5_Ag	KnownBoundary	0	0.00	6.05	0.00	2.00	0.00	10.45	1.68	2.46	0.00	0.00	0.00	0.00	0.00	2.47	0.00	0.00	11.50	2.57	0.00	2.81	0.00	0.00	0.00
42	ER5g	ExonRegion	0	6.35	6.61	1.23	1.36	2.68	14.67	3.97	2.59	1.24	1.15	5.80	4.33	0.00	4.87	11.61	5.20	13.20	3.70	1.59	9.57	0.00	1.04	0.00
43	ER5h	ExonRegion	1	228.80	108.53	123.52	81.23	295.52	188.52	335.82	57.52	57.53	78.59	260.17	21.26	8.30	241.52	331.15	446.18	342.41	302.33	188.43	248.30	35.53	50.83	50.05
44	E5b_E7a	KnownJunction	1	78.46	30.13	135.12	52.87	51.02	24.02	84.22	75.25	63.34	102.94	291.65	115.84	34.58	125.73	207.43	84.00	475.64	50.24	80.28	149.18	63.63	18.68	15.02
45	I5	Intron	0	5.53	2.48	6.36	1.41	6.05	9.26	18.44	6.28	6.73	10.71	10.10	3.99	8.64	8.48	3.71	16.04	8.04	17.58	1.66	20.37	1.15	2.18	1.53
46	I5_AR1	ActiveIntronRegion	0	5.56	2.49	6.40	1.42	6.10	9.32	18.55	6.33	6.77	10.78	10.17	4.02	8.70	8.53	3.74	16.15	8.09	17.70	1.67	20.51	1.16	2.19	1.54
47	E6_Aa	NovelBoundary	0	7.04	13.29	6.95	8.92	11.80	0.00	26.06	11.91	8.07	10.05	15.48	12.45	12.17	9.77	10.01	7.52	15.43	15.34	0.00	14.76	3.03	8.21	0.00
48	ER6a	ExonRegion	0	8.76	4.20	4.57	0.85	4.47	0.77	6.09	2.25	6.14	2.29	10.50	8.09	8.07	8.39	2.07	8.65	8.28	3.45	2.66	16.79	0.00	0.87	0.00
49	E6_Da	NovelBoundary	0	16.15	15.39	10.29	14.95	12.65	8.06	37.45	20.54	15.71	10.40	20.64	12.15	26.78	35.73	4.45	11.28	20.94	14.80	0.00	15.08	3.15	3.12	0.00
50	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	I6	Intron	0	5.36	10.69	6.04	3.76	19.27	13.21	22.93	3.51	3.76	5.32	6.21	12.44	11.68	8.95	3.21	7.81	3.21	4.65	1.86	13.67	0.64	0.61	1.71
52	I6_SR1	SilentIntronRegion	0	8.34	8.17	9.01	5.45	11.96	11.87	15.55	4.98	2.71	6.68	8.57	17.91	11.59	12.36	3.70	6.06	4.92	3.62	2.56	10.60	0.00	1.39	1.50
53	I6_AR1	ActiveIntronRegion	0	4.96	7.32	16.91	7.63	27.52	19.54	24.13	6.32	4.69	11.44	5.25	19.42	26.26	15.64	1.82	13.25	4.90	6.28	5.01	20.18	0.00	1.01	2.60
54	I6_SR2	SilentIntronRegion	0	4.24	10.95	4.69	3.43	18.94	13.57	22.50	2.76	3.58	5.65	6.37	10.36	5.49	8.40	3.39	10.33	3.73	5.83	2.29	15.35	1.15	0.00	2.19
55	I6_AR2	ActiveIntronRegion	0	7.80	14.49	6.36	4.01	25.05	12.23	33.45	4.41	5.47	3.51	6.17	13.40	25.73	9.23	4.03	2.89	1.60	2.92	0.00	12.30	0.00	1.98	0.87
56	I6_AR3	ActiveIntronRegion	0	3.80	5.86	2.13	0.00	9.84	9.82	7.98	2.34	1.34	0.67	3.07	13.63	7.86	2.39	0.34	0.00	0.00	0.54	0.00	3.50	0.00	0.06	0.00
57	E7_Aa	NovelBoundary	0	23.12	34.80	10.70	14.82	22.67	7.61	50.04	12.82	4.34	12.71	11.95	12.60	27.27	21.37	19.90	14.78	3.55	0.00	0.00	24.03	0.00	0.00	0.00
58	ER7a	ExonRegion	1	85.51	54.31	298.35	173.85	111.38	73.23	139.02	154.82	133.92	231.15	853.83	198.52	72.85	436.46	587.06	319.33	1077.41	159.30	190.95	555.23	100.40	101.84	48.83
59	E7_Da	KnownBoundary	1	34.38	11.77	5.41	4.06	4.33	10.33	26.98	8.30	15.57	2.58	9.90	18.91	53.57	12.83	15.20	3.59	8.70	0.00	0.00	12.27	0.00	2.82	0.00
60	E7a_E8b	KnownJunction	1	81.13	65.12	501.67	315.94	165.45	39.24	134.52	219.34	183.22	294.49	623.89	303.55	59.90	1093.95	1440.64	930.18	764.00	325.08	492.16	857.32	60.97	188.91	133.42
61	ER7b	ExonRegion	0	23.73	12.80	8.50	10.42	20.93	21.09	37.51	11.94	8.63	8.06	9.78	16.82	13.37	15.40	9.80	14.36	12.91	5.25	4.30	14.40	0.92	2.32	0.31
62	E7_Db	KnownBoundary	0	16.89	11.71	0.00	1.23	6.37	2.16	26.14	6.94	3.44	1.13	6.90	0.00	18.34	20.43	8.90	15.55	11.13	1.58	0.00	4.86	0.00	0.00	0.00
63	ER7c	ExonRegion	0	28.52	7.25	9.62	6.91	18.31	7.51	33.32	4.37	4.65	1.66	8.26	8.19	5.60	11.72	8.97	7.94	8.54	5.11	2.95	7.89	0.00	0.64	1.82
64	E8_Aa	NovelBoundary	0	19.78	0.00	3.19	0.00	48.47	21.41	24.82	3.74	0.00	4.46	7.58	0.00	13.64	4.94	0.00	3.93	4.77	3.65	0.00	8.69	0.00	0.00	0.00
65	ER8a	ExonRegion	0	17.76	10.62	13.41	13.09	34.14	12.88	38.07	12.56	9.37	8.70	12.16	22.69	12.83	11.28	13.55	12.93	10.11	2.95	3.68	14.83	0.41	5.26	0.99
66	E8_Ab	KnownBoundary	0	16.89	9.41	21.67	25.24	36.50	7.15	61.21	23.91	9.58	3.87	21.43	18.91	7.79	9.54	8.90	8.46	17.77	4.06	0.00	19.88	0.00	5.45	0.00
67	ER8b	ExonRegion	0	38.57	64.04	395.25	256.83	488.77	235.66	275.10	171.68	157.35	216.19	348.69	323.75	76.56	550.91	819.77	447.17	417.96	176.27	195.25	485.93	26.16	118.49	48.51
68	E8a_E9a	KnownJunction	1	54.38	121.36	348.33	195.15	1056.79	646.16	1041.80	218.27	157.61	240.58	433.43	288.99	169.63	233.45	474.32	160.39	466.01	108.65	99.39	331.28	19.40	161.23	3.41
69	E9_Aa	NovelBoundary	0	0.00	3.35	19.60	9.39	3.57	2.16	4.37	9.16	3.39	9.03	2.16	0.00	0.00	0.00	0.00	0.00	4.49	2.03	0.00	0.00	0.00	0.00	0.00
70	ER9a	ExonRegion	1	158.26	231.72	320.32	191.57	515.03	343.65	783.42	158.82	144.79	243.71	385.79	309.20	143.33	241.81	449.90	146.00	371.86	67.56	72.61	285.26	19.18	107.19	15.55
71	E9_Da	KnownBoundary	1	323.02	132.08	211.05	121.83	210.95	79.78	176.87	71.43	68.14	135.52	157.41	236.48	111.36	165.23	210.15	66.91	120.80	32.04	49.51	197.31	9.14	46.84	8.54
72	E9_Db	KnownBoundary	0	410.22	187.07	160.79	113.07	192.87	81.15	171.84	90.24	75.32	109.33	129.40	180.51	157.94	147.21	238.58	113.39	144.83	57.25	49.79	196.55	0.00	55.05	8.19
73	ER9b	ExonRegion	1	506.48	212.71	298.87	196.39	268.91	111.86	245.20	145.88	131.79	225.48	247.80	413.46	256.08	259.21	380.93	137.61	216.21	87.58	77.72	302.34	6.61	83.76	12.33
74	ER9c	ExonRegion	1	547.73	184.77	249.98	178.63	211.20	108.58	193.18	131.97	135.49	207.62	208.44	403.75	165.02	253.85	477.76	168.93	233.14	79.58	62.60	257.69	5.23	77.53	14.75
75	E9_Dc	KnownBoundary	1	281.31	79.46	65.67	35.59	106.03	67.35	85.76	44.81	37.64	61.41	91.08	221.02	26.95	123.20	157.36	82.20	104.72	25.99	13.27	118.82	0.00	40.72	0.00
76	E9_Dd	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
77	E9_De	KnownBoundary	0	61.79	45.06	101.62	84.44	43.46	14.76	34.01	38.61	48.67	104.41	43.22	44.71	28.24	19.48	58.72	32.81	47.59	13.60	14.40	52.67	2.72	16.10	4.10
78	ER9d	ExonRegion	1	372.08	118.76	217.87	166.27	135.39	77.75	124.98	132.75	130.18	196.81	165.07	333.37	68.47	201.39	360.92	133.75	192.77	60.61	42.68	176.60	8.81	70.42	14.68
79	ER9e	ExonRegion	1	244.99	96.09	208.62	158.09	138.47	78.85	109.89	130.93	130.92	191.53	158.50	290.07	68.01	168.91	304.63	130.03	155.14	49.89	35.84	164.36	8.81	86.99	12.48
80	ER9f	ExonRegion	1	55.10	42.70	73.79	67.63	95.15	62.46	79.62	46.55	61.29	78.28	30.33	68.56	34.09	31.12	63.21	21.23	29.24	18.48	16.33	63.86	3.88	21.97	1.76
81	IG45_AR2	ActiveIntergenicRegion	0	10.45	54.65	23.94	28.43	44.32	31.31	28.37	27.47	40.30	43.12	2.57	5.48	0.86	2.63	1.42	1.67	3.30	8.74	20.10	30.86	0.86	4.04	2.81
82	IG45_AR1	ActiveIntergenicRegion	0	2.88	7.59	7.42	9.25	7.98	4.90	17.05	7.10	6.84	8.08	3.11	2.11	2.54	2.32	3.98	1.40	0.27	1.59	0.00	12.15	0.00	0.17	0.00
83	IG45_SR1	SilentIntergenicRegion	0	1.78	6.95	2.92	8.03	6.98	7.40	12.96	2.76	5.39	4.34	1.96	5.89	7.00	2.56	1.16	2.20	2.16	3.49	2.12	22.55	0.29	0.51	0.60