Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NUDT1 Gene 0 27.76 17.70 103.27 32.18 30.25 30.23 51.57 26.95 10.95 58.31 45.29 13.96 6.99 66.70 73.87 54.09 43.79 56.68 26.77 37.40 23.82 11.36 16.45 2 356714 Transcript 0 26.45 4.87 148.93 25.64 6.79 9.09 16.12 17.50 9.46 62.70 8.53 0.00 8.28 30.43 54.02 31.02 26.18 9.99 3.67 31.96 5.00 0.00 10.33 3 447457 Transcript 0 1.69 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.23 0.00 0.02 0.00 0.00 1.05 0.00 0.00 0.00 0.35 0.00 0.00 0.81 0.00 1.31 4 397049 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 397047 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 397046 Transcript 0 0.00 0.00 0.41 0.00 0.89 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.97 0.00 1.10 0.00 0.00 0.00 2.20 0.00 0.00 7 397048 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 449983 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 454650 Transcript 0 7.48 2.18 10.98 3.78 9.07 3.46 7.63 6.66 2.53 11.57 6.88 5.66 0.69 11.84 11.48 11.59 9.11 5.05 3.12 4.59 2.13 1.25 2.81 10 339737 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 343985 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 431585 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 471348 Transcript 0 3.34 4.29 1.93 2.14 4.68 1.91 3.26 1.80 0.97 0.60 4.39 4.39 5.34 5.80 8.49 6.81 5.94 1.29 2.24 5.61 5.05 0.37 4.65 14 487426 Transcript 0 4.17 1.02 5.54 2.71 2.79 5.15 2.31 2.37 1.84 2.28 1.78 1.34 0.48 3.27 2.68 2.71 2.19 0.69 0.53 0.89 11.37 2.81 5.79 15 ER1a ExonRegion 0 0.00 0.00 19.54 2.32 0.00 0.00 0.00 1.99 0.49 7.28 0.00 0.00 1.64 0.00 0.87 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 16 E1a_E2e KnownJunction 0 0.00 0.00 2.81 0.00 0.00 0.00 1.72 0.00 0.00 1.45 2.16 0.00 0.00 0.00 8.90 3.25 7.48 1.66 0.00 0.00 0.00 0.00 0.00 17 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1a_E3c KnownJunction 0 26.45 4.87 148.93 25.64 6.79 9.09 16.12 17.50 9.46 62.70 8.53 0.00 8.28 30.43 54.02 31.02 26.18 9.99 3.67 31.96 5.00 0.00 10.33 19 ER1b ExonRegion 1 28.08 11.66 106.20 14.99 17.66 14.79 39.19 14.75 7.25 47.48 16.88 0.00 5.63 25.01 62.28 56.87 36.97 26.11 7.22 29.93 7.20 3.06 10.18 20 ER2a ExonRegion 0 0.00 0.00 0.41 0.00 0.89 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.97 0.00 1.10 0.00 0.00 0.00 2.20 0.00 0.00 21 E2_Da KnownBoundary 0 13.78 0.00 1.83 0.00 36.59 2.73 20.71 2.51 0.00 4.92 12.27 0.00 0.00 12.01 4.45 8.12 21.41 0.00 4.61 3.26 5.56 0.00 0.00 22 E2a_E2e KnownJunction 0 6.45 3.35 8.96 2.06 20.20 8.57 32.33 10.64 0.00 2.53 17.11 0.00 6.49 33.61 43.51 40.50 47.22 6.09 4.52 6.26 15.32 2.88 0.00 23 ER2b ExonRegion 0 1.59 2.03 2.83 0.00 8.19 1.72 5.63 0.00 0.00 0.36 3.99 0.00 1.47 13.50 10.15 7.62 9.08 0.58 1.19 3.19 7.30 0.13 0.00 24 ER2c ExonRegion 0 10.86 2.03 7.84 0.00 26.40 7.46 30.01 2.77 0.99 3.13 19.97 0.00 4.69 37.68 35.01 36.66 37.41 6.65 6.58 7.23 14.99 2.08 0.00 25 ER2d ExonRegion 0 9.89 0.00 1.96 0.27 17.12 1.88 11.42 0.00 1.61 2.67 11.79 1.73 0.00 8.20 3.92 8.25 10.98 1.85 2.63 1.65 4.08 0.00 0.00 26 E2_Db KnownBoundary 0 5.70 0.00 3.25 0.00 4.24 2.16 3.89 0.00 2.84 3.12 0.00 0.00 0.00 2.12 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 27 E2b_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER2e ExonRegion 0 7.48 2.18 10.98 3.78 9.07 3.46 7.63 6.66 2.53 11.57 6.88 5.66 0.69 11.84 11.48 11.59 9.11 5.05 3.12 4.59 2.13 1.25 2.81 29 E2_Ad KnownBoundary 0 10.59 2.43 44.08 25.54 12.39 9.09 15.59 17.17 25.20 28.37 21.22 6.00 0.00 12.24 10.75 10.51 21.04 34.45 0.00 7.09 4.82 2.76 11.52 30 E2_Ae KnownBoundary 0 17.86 6.71 13.04 11.25 7.30 0.00 9.72 2.55 11.57 16.65 4.53 20.26 0.00 2.35 0.00 8.46 9.07 4.81 4.14 12.02 2.97 0.00 0.00 31 ER2f ExonRegion 0 15.66 3.36 22.36 10.77 13.51 3.39 11.32 7.69 2.84 17.83 7.25 10.39 0.47 12.51 11.61 14.27 19.64 17.46 3.19 8.94 3.75 1.77 2.20 32 ER2g ExonRegion 1 65.23 9.27 42.42 16.11 57.85 30.62 75.62 14.17 4.10 25.74 57.21 4.76 5.82 68.05 56.52 106.40 82.06 26.64 13.38 36.26 21.38 7.25 8.40 33 E2_Dc KnownBoundary 0 3.48 2.57 25.84 9.96 9.85 5.79 8.17 4.64 1.42 4.30 2.68 0.00 0.00 10.54 0.00 3.67 0.00 6.43 0.00 2.49 2.72 0.00 0.00 34 E2c_E3c KnownJunction 0 28.60 5.06 35.27 13.25 15.96 2.90 8.08 11.42 3.15 25.06 4.74 0.00 0.00 17.13 8.90 7.35 11.78 27.19 0.00 14.06 3.03 2.51 0.00 35 ER2h ExonRegion 0 5.25 2.65 8.56 4.70 2.60 1.71 5.88 2.20 0.66 1.38 4.13 0.00 0.00 9.72 2.50 1.99 0.09 1.27 0.00 2.04 2.48 0.06 0.00 36 E2d_E3c KnownJunction 0 11.04 0.00 3.61 6.59 0.00 0.00 1.99 2.09 1.39 4.27 7.32 0.00 0.00 7.42 4.45 0.00 0.00 0.00 0.00 2.49 2.41 0.00 0.00 37 ER3a ExonRegion 0 3.39 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.47 0.00 0.04 0.00 0.00 2.09 0.00 0.00 0.00 0.70 0.00 0.00 1.62 0.00 2.61 38 E3_Ab KnownBoundary 0 6.89 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 3.67 39 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 40 ER3b ExonRegion 0 22.37 7.84 32.21 6.62 15.67 11.00 30.07 5.93 4.23 19.01 12.43 1.24 1.34 20.19 32.33 24.20 17.45 22.17 4.55 13.98 9.13 1.19 7.55 41 ER3c ExonRegion 1 143.79 84.70 245.79 51.02 120.41 116.41 257.42 51.78 26.07 141.69 109.25 9.60 16.92 136.21 203.84 201.26 143.45 178.39 65.72 109.34 35.21 13.86 37.67 42 E3_Ad KnownBoundary 0 105.72 52.42 303.86 61.60 62.65 92.39 197.14 66.42 35.33 183.49 80.44 18.31 26.30 70.87 74.66 86.90 86.77 247.15 81.41 63.21 16.68 7.84 19.38 43 ER3d ExonRegion 0 55.28 17.23 158.19 33.28 25.45 36.84 60.45 44.35 14.81 86.12 80.16 32.47 13.82 87.13 90.74 62.30 101.50 103.33 28.29 43.31 32.94 7.35 14.49 44 E3_Da KnownBoundary 1 43.79 21.05 213.51 46.81 18.76 38.90 48.40 48.34 15.71 105.30 150.67 12.15 6.82 155.04 151.80 81.00 140.35 83.65 31.53 85.78 74.75 14.88 19.63 45 ER3e ExonRegion 1 48.68 19.59 277.62 69.84 38.05 39.14 44.53 67.45 25.91 166.47 190.89 19.75 6.06 208.36 212.29 154.19 217.86 157.19 77.46 140.01 77.56 19.87 42.98 46 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 47 E3b_E6a KnownJunction 1 68.83 17.89 399.39 95.33 60.27 46.56 73.27 102.23 38.77 226.93 230.85 24.46 6.82 234.86 275.54 287.28 253.30 242.30 175.63 213.68 77.10 32.03 74.44 48 E4_Aa NovelBoundary 0 2.74 5.92 10.50 8.76 22.92 0.00 11.97 8.67 4.80 6.15 0.00 18.91 0.00 4.94 4.45 0.00 4.49 1.58 8.94 5.94 0.00 0.00 0.00 49 ER4a ExonRegion 0 6.69 8.58 3.85 4.29 9.36 3.82 6.52 3.60 1.93 1.20 8.78 8.78 10.67 11.60 16.99 13.61 7.85 2.59 4.48 11.21 10.09 0.73 9.30 50 E4_Da NovelBoundary 0 1312.53 1214.85 2750.52 2929.63 1112.99 865.98 1788.90 3380.60 2726.79 2870.04 453.64 266.64 276.61 216.02 363.19 1345.37 933.89 2983.07 1185.16 1497.13 1022.04 933.69 1279.17 51 E5_Aa NovelBoundary 0 3.41 5.79 17.21 8.19 3.57 25.84 10.82 15.16 4.80 8.43 5.37 0.00 0.00 2.47 8.90 7.52 4.02 1.99 9.60 5.37 3.03 6.00 12.89 52 ER5a ExonRegion 0 6.36 3.05 13.62 8.12 8.36 13.00 6.94 7.12 5.52 6.84 5.35 4.01 1.45 7.33 8.03 4.46 6.57 2.06 1.59 2.67 16.70 5.32 13.88 53 E5_Da NovelBoundary 0 17.63 9.87 18.39 28.97 12.22 29.02 11.75 14.42 14.38 4.30 9.27 0.00 0.00 10.36 0.00 0.00 0.00 4.97 0.00 3.00 8.53 2.51 7.94 54 E5a_E6a KnownJunction 0 6.15 0.00 3.02 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 3.67 0.00 0.00 0.00 0.00 17.42 3.12 3.50 55 E6_Aa NovelBoundary 0 6.89 3.35 16.41 8.16 12.14 7.67 4.15 11.87 6.11 4.75 2.68 0.00 0.00 12.01 5.19 3.33 0.00 3.65 0.00 0.00 11.43 2.82 3.59 56 ER6a ExonRegion 0 54.25 47.44 429.54 119.56 71.86 78.58 113.43 107.86 33.26 228.90 167.25 35.05 17.51 239.46 318.86 238.93 143.77 318.89 117.18 146.14 78.20 35.45 57.65 57 E6a_E7a KnownJunction 0 27.34 97.29 495.37 128.16 131.75 245.99 410.85 110.00 30.21 271.65 242.17 43.51 28.57 274.53 280.24 158.51 194.95 161.75 101.84 177.24 95.57 34.54 22.19 58 E7_Aa NovelBoundary 0 16.82 0.00 9.61 14.22 7.39 18.46 8.17 6.90 7.81 7.71 0.00 6.30 0.00 4.41 8.90 3.50 0.00 2.16 0.00 0.00 8.28 8.63 0.00 59 ER7a ExonRegion 0 73.34 59.03 305.84 104.75 87.68 97.42 179.32 71.19 30.73 170.81 119.60 41.66 21.11 199.61 198.22 119.39 96.10 128.96 80.23 104.77 58.99 40.09 36.05 60 ER7b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00