Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ITGB8 Gene 0 1.90 8.91 4.77 8.27 9.00 17.08 23.17 4.63 10.54 5.20 1.44 6.91 29.44 42.63 17.85 11.34 31.75 11.33 4.36 14.95 8.96 39.24 21.75 2 478974 Transcript 0 0.79 1.58 0.56 2.33 1.04 5.76 7.00 1.14 1.08 1.50 0.00 1.11 10.78 11.86 3.27 1.20 8.94 4.50 0.00 4.74 3.75 6.37 4.63 3 222573 Transcript 0 1.25 19.47 7.92 18.22 17.15 59.59 49.23 7.26 24.02 9.23 3.29 16.25 66.86 116.19 39.48 30.99 86.63 41.52 5.53 36.74 26.70 114.21 57.00 4 460204 Transcript 0 0.90 3.02 2.38 4.82 4.00 1.43 5.70 1.81 2.82 1.70 0.67 0.76 3.18 3.52 4.16 1.45 5.73 1.57 0.73 2.09 0.40 1.31 1.29 5 477859 Transcript 0 1.81 3.23 2.72 2.40 3.93 3.27 9.55 2.62 2.47 1.72 1.21 1.81 5.85 3.07 7.64 4.33 5.12 1.95 2.53 4.79 1.33 3.74 3.30 6 IG18_AR1 ActiveIntergenicRegion 0 2.42 3.98 11.92 7.98 13.80 8.88 9.85 11.64 6.44 14.26 2.12 15.55 27.89 24.45 64.07 9.36 18.41 0.34 4.37 4.27 1.01 3.81 1.61 7 IG18_AR2 ActiveIntergenicRegion 0 1.58 4.33 4.29 3.93 5.52 9.25 7.53 5.40 1.71 3.33 1.11 9.60 6.48 20.88 38.81 12.34 17.67 0.99 4.47 2.45 1.52 1.50 0.38 8 IG18_SR3 SilentIntergenicRegion 0 0.37 1.76 2.86 2.31 1.14 0.00 3.13 3.77 2.03 1.10 0.00 1.36 0.00 7.30 12.70 7.19 2.91 0.87 3.99 0.79 0.00 1.27 0.92 9 IG18_AR3 ActiveIntergenicRegion 0 0.55 3.35 2.41 1.06 8.52 3.88 4.64 4.07 2.06 3.00 1.23 0.00 0.20 18.97 46.95 3.26 15.26 4.07 10.45 1.35 2.39 1.14 1.61 10 IG18_SR4 SilentIntergenicRegion 0 0.41 0.90 2.94 1.58 2.97 3.02 4.37 3.79 1.92 3.20 0.84 1.78 3.39 13.52 16.34 4.51 11.54 3.11 0.97 2.66 0.37 0.71 0.33 11 IG18_AR4 ActiveIntergenicRegion 0 0.27 0.52 1.80 0.78 2.74 5.73 4.21 1.41 0.94 2.68 0.99 1.40 2.08 15.13 15.41 5.94 11.98 2.70 1.54 3.88 4.79 5.82 7.51 12 ER1a ExonRegion 0 0.00 0.00 1.11 0.00 0.00 0.00 1.08 1.34 1.68 1.98 0.00 0.00 3.41 10.04 3.17 0.00 8.85 3.95 0.00 5.42 3.01 8.24 9.21 13 ER1b ExonRegion 0 0.67 2.55 4.83 1.95 4.28 12.29 11.26 6.25 5.49 6.06 1.10 1.80 6.14 46.27 28.64 10.72 34.81 17.60 7.80 14.28 14.94 27.08 22.22 14 E1_Da NovelBoundary 0 0.00 0.00 0.00 3.33 0.00 0.00 6.76 2.46 3.50 1.67 0.00 0.00 0.00 22.25 10.63 3.50 31.88 0.00 0.00 13.04 2.72 0.00 8.37 15 E1a_E4a KnownJunction 1 0.00 8.29 3.22 5.79 7.13 23.85 15.15 3.29 12.59 6.63 0.00 0.00 6.17 102.66 13.47 0.00 43.01 18.78 13.93 29.53 19.71 82.18 79.39 16 E2_Aa NovelBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 10.20 0.00 3.44 1.40 0.00 0.00 0.00 24.13 4.45 7.43 20.85 2.57 4.42 3.00 5.56 4.90 4.35 17 ER2a ExonRegion 0 0.00 0.00 0.00 0.17 0.51 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 7.19 0.00 0.00 3.30 0.28 0.00 0.36 0.00 2.08 0.00 18 E2_Da NovelBoundary 0 0.00 0.00 0.00 1.70 4.33 0.00 2.16 0.00 0.00 0.00 0.00 0.00 8.28 0.00 18.54 0.00 17.11 4.89 9.60 3.26 2.78 0.00 3.59 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 13.95 4.82 8.72 4.11 0.00 0.00 0.00 0.00 2.94 0.00 21 I2_SR1 SilentIntronRegion 0 0.83 4.90 3.35 3.26 5.06 4.09 16.65 3.80 3.87 1.68 0.25 5.34 15.53 3.82 9.82 2.86 11.73 1.11 1.32 5.33 0.63 1.74 2.15 22 I2_AR1 ActiveIntronRegion 0 0.00 5.14 0.45 6.10 3.80 2.90 12.33 3.46 2.47 1.93 0.00 0.00 10.12 7.01 10.99 4.85 25.19 1.85 0.00 6.16 0.00 2.08 2.94 23 I2_AR2 ActiveIntronRegion 0 0.94 6.41 4.33 6.94 5.17 8.20 20.66 1.65 4.07 2.15 0.43 4.37 19.44 9.17 12.89 6.94 23.26 1.60 1.24 9.64 0.98 2.37 3.57 24 I2_SR2 SilentIntronRegion 0 1.60 3.54 3.36 3.65 5.53 5.12 15.24 1.42 2.79 1.60 0.29 6.78 10.15 3.14 8.45 2.25 11.84 3.99 1.19 5.40 0.33 0.32 4.29 25 I2_AR3 ActiveIntronRegion 0 1.50 10.26 4.82 6.46 6.60 4.21 13.11 1.97 3.30 1.78 0.21 3.29 9.35 3.42 7.30 1.62 13.19 3.68 2.26 5.30 1.45 1.25 2.87 26 E3_Aa NovelBoundary 0 2.89 14.80 3.02 12.72 4.33 13.97 27.82 4.07 1.13 11.71 2.00 0.00 0.00 11.95 12.36 4.36 17.86 3.61 0.00 24.29 0.00 0.00 0.00 27 ER3a ExonRegion 0 2.69 9.05 7.14 14.29 11.50 4.30 17.09 5.42 8.46 5.10 0.10 2.27 9.55 3.38 12.49 4.36 13.89 4.44 2.18 5.92 1.19 1.84 3.88 28 E3_Da NovelBoundary 0 0.00 24.21 6.33 28.07 20.97 0.00 9.63 2.51 4.43 10.88 0.00 0.00 6.82 5.47 27.94 16.32 3.83 0.00 14.21 6.07 0.00 2.33 0.00 29 I3_AR2 ActiveIntronRegion 0 0.00 6.89 2.06 3.25 5.09 0.00 11.10 3.46 4.50 1.11 0.00 1.82 0.00 5.34 3.93 6.62 15.33 2.09 3.19 3.77 1.64 0.00 4.36 30 I3_AR4 ActiveIntronRegion 0 0.00 3.73 3.09 2.56 0.51 2.44 8.83 3.30 5.88 4.68 0.00 3.25 19.35 3.84 3.69 2.89 7.23 1.02 0.50 2.96 1.39 3.08 2.42 31 I3_AR5 ActiveIntronRegion 0 0.00 4.07 0.00 0.00 0.00 5.50 3.97 0.00 0.00 1.15 0.00 4.33 26.97 0.00 5.80 0.00 11.14 0.00 0.00 3.19 0.00 1.82 2.94 32 ER4a ExonRegion 1 1.26 7.47 4.86 4.36 4.29 15.80 13.53 3.03 13.11 11.82 0.88 8.46 24.05 113.88 18.15 20.94 65.33 20.71 4.96 29.66 22.73 52.28 40.67 33 E4a_E5b KnownJunction 0 0.00 2.63 7.89 3.23 11.97 10.62 21.33 4.35 14.64 10.48 2.26 0.00 54.70 103.77 20.40 8.29 65.45 12.19 8.38 34.52 31.51 50.27 34.91 34 E5_Aa NovelBoundary 0 0.00 16.12 0.00 0.00 0.00 0.00 16.87 0.00 0.00 4.41 0.00 0.00 12.50 2.47 0.00 3.85 4.68 3.81 0.00 6.52 2.59 0.00 8.71 35 ER5a ExonRegion 0 3.01 4.60 1.66 2.02 3.46 2.41 11.01 1.67 1.47 1.36 0.67 2.31 5.23 2.20 6.28 3.65 6.14 1.93 2.26 5.51 1.48 1.91 3.36 36 E5_Ab KnownBoundary 0 0.00 6.64 3.49 5.03 0.00 0.00 6.40 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER5b ExonRegion 0 1.24 15.64 10.20 7.48 10.44 20.98 34.39 6.35 20.37 11.41 0.69 27.92 81.54 143.01 34.73 24.92 76.98 18.03 11.61 38.71 22.37 109.42 56.78 38 E5a_E6a KnownJunction 0 0.00 16.18 6.71 3.43 17.32 16.13 33.43 7.80 23.23 12.52 0.00 24.91 116.55 103.60 26.45 15.12 100.51 18.03 0.00 26.65 26.44 102.63 46.27 39 ER6a ExonRegion 0 0.21 11.92 7.05 14.11 14.39 38.25 46.15 9.83 26.88 11.51 2.03 19.58 102.29 140.15 42.19 24.07 97.08 16.60 5.60 33.15 23.54 156.13 58.07 40 E6_Da KnownBoundary 0 0.00 0.00 1.80 0.00 0.00 8.01 4.15 4.27 1.36 0.00 0.00 0.00 8.28 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 0.00 41 E6a_E6b KnownJunction 0 3.78 24.60 2.93 10.82 4.33 27.54 75.61 2.55 19.53 17.86 5.05 5.25 128.89 123.37 28.31 28.71 170.17 22.22 14.02 29.53 33.55 130.18 105.00 42 ER6b ExonRegion 0 0.00 1.53 1.12 1.37 1.47 1.83 7.56 1.13 1.47 0.45 0.00 0.70 4.87 0.63 1.79 0.46 1.05 0.02 0.13 1.46 0.27 2.41 0.46 43 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.07 2.90 13.47 0.00 1.59 0.00 0.00 0.00 8.28 0.00 4.45 0.00 0.00 0.00 0.00 5.69 0.00 0.00 4.18 44 ER6c ExonRegion 0 0.97 20.84 7.96 14.70 14.69 42.30 55.60 5.54 23.32 9.13 2.23 13.59 118.02 136.55 44.77 36.42 97.39 32.68 4.88 40.41 31.67 135.04 79.31 45 E6_Db KnownBoundary 0 0.00 8.09 0.00 0.00 4.33 12.04 8.08 3.78 1.56 0.00 0.00 0.00 12.66 0.00 16.44 0.00 13.93 0.00 0.00 0.00 2.72 0.00 3.16 46 E6b_E6c KnownJunction 0 0.00 5.53 2.45 13.55 7.13 26.52 54.54 5.59 18.08 12.17 2.05 0.00 68.50 133.26 51.30 32.81 82.66 41.00 4.80 46.34 41.51 148.86 105.51 47 E6b_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 6.30 0.00 11.95 0.00 0.00 8.04 2.57 0.00 2.36 0.00 2.69 0.00 48 ER6d ExonRegion 0 4.22 5.75 5.53 4.11 5.94 5.01 10.30 4.78 4.18 2.50 4.19 4.24 8.12 3.66 10.50 9.62 11.85 4.59 7.71 8.08 3.58 4.91 7.82 49 E6_Ac KnownBoundary 0 0.00 0.00 2.84 3.03 4.33 14.48 20.93 2.34 0.00 2.31 0.00 0.00 6.66 2.18 14.34 15.55 0.00 0.00 4.80 5.56 0.00 0.00 0.00 50 ER6e ExonRegion 0 1.37 18.33 8.16 15.09 21.64 43.57 61.45 9.29 19.51 10.90 1.96 17.32 123.81 131.08 48.04 40.84 102.18 34.52 7.94 37.27 28.70 135.34 74.48 51 E6_Dc KnownBoundary 0 0.00 0.00 3.34 3.26 0.00 7.38 23.10 4.52 1.30 6.15 0.00 0.00 0.00 4.30 14.59 12.48 8.70 4.39 0.00 9.52 0.00 14.51 0.00 52 E6c_E7a KnownJunction 0 0.00 32.56 8.16 9.46 33.36 21.24 58.65 5.96 23.29 7.41 0.00 5.70 94.80 170.70 49.32 46.65 114.54 34.45 20.33 47.11 16.80 125.77 107.30 53 ER6f ExonRegion 0 0.00 1.06 2.55 2.09 4.87 3.83 9.32 2.89 2.75 2.55 0.00 0.00 5.17 5.78 11.98 3.58 1.45 1.28 0.00 4.09 0.00 5.72 1.54 54 I6_SR2 SilentIntronRegion 0 1.13 5.67 1.72 5.20 5.69 2.44 15.23 3.59 4.61 3.83 0.17 1.44 17.68 1.93 6.82 3.44 5.05 1.48 1.11 5.11 0.47 2.73 1.38 55 I6_AR2 ActiveIntronRegion 1 0.71 9.47 2.28 9.93 9.51 3.91 17.24 4.25 4.44 6.39 0.24 0.00 8.25 2.83 13.97 3.98 5.84 0.00 2.99 3.32 1.45 0.51 0.72 56 I6_AR3 ActiveIntronRegion 1 0.00 6.10 1.23 1.24 5.35 0.00 10.23 5.19 7.07 3.96 0.00 0.00 4.69 2.81 14.24 4.05 6.60 0.00 6.37 0.97 0.00 0.00 0.00 57 I6_AR4 ActiveIntronRegion 1 0.75 15.52 1.67 11.02 9.59 1.91 13.22 4.83 7.97 4.23 0.00 1.25 8.45 1.36 14.70 0.71 3.78 0.00 1.85 2.29 1.54 2.18 1.37 58 E7_Aa NovelBoundary 0 0.00 8.09 0.00 5.73 4.24 2.21 24.02 4.19 0.00 3.14 0.00 0.00 34.09 6.77 8.90 4.27 3.65 0.00 0.00 5.88 0.00 5.02 3.41 59 ER7a ExonRegion 0 2.03 28.26 5.54 11.73 14.44 34.36 52.17 9.06 22.82 6.50 1.57 22.64 124.43 115.53 32.34 27.62 83.45 26.66 5.44 34.11 20.55 111.51 71.21 60 E7a_E8a KnownJunction 1 3.04 43.48 1.83 20.74 16.64 30.61 51.23 8.01 29.86 13.14 2.68 6.30 158.43 104.95 14.09 43.41 76.95 26.86 0.00 34.71 10.13 128.10 96.89 61 ER8a ExonRegion 1 0.24 25.01 2.97 8.72 9.10 30.03 37.82 7.13 21.31 7.70 0.52 15.83 104.07 121.11 17.76 25.76 74.16 14.62 4.67 38.46 19.49 96.95 53.61 62 E8_Da NovelBoundary 0 0.00 0.00 0.00 5.56 0.00 0.00 21.20 3.70 1.10 0.00 0.00 0.00 33.76 2.47 4.45 0.00 9.16 0.00 0.00 5.82 0.00 6.25 0.00 63 E8a_E9a KnownJunction 1 0.00 14.08 1.54 6.19 11.80 31.57 27.95 11.13 20.98 10.42 0.00 18.91 134.24 128.14 4.45 7.86 73.59 6.09 4.52 39.50 31.32 49.35 41.06 64 I8 Intron 0 0.62 3.18 1.35 4.68 2.02 6.38 10.95 0.85 1.36 1.16 0.00 1.97 18.25 7.02 2.55 1.81 7.36 2.02 1.11 5.21 0.97 4.38 1.30 65 I8_SR1 SilentIntronRegion 0 0.68 2.20 1.71 5.05 1.98 5.56 11.09 0.76 0.86 1.26 0.00 1.11 18.73 7.17 2.70 1.83 8.13 2.13 1.26 5.66 0.76 4.62 1.37 66 I8_AR1 ActiveIntronRegion 0 0.46 6.37 0.00 3.51 2.89 9.71 9.72 1.67 2.78 0.55 0.00 5.48 16.87 6.94 1.77 1.28 6.06 1.70 1.03 4.60 1.90 4.28 1.59 67 I8_SR2 SilentIntronRegion 0 0.48 5.53 0.83 3.68 0.61 7.07 12.32 0.00 2.92 1.55 0.00 2.60 16.88 5.82 2.79 2.69 2.99 1.67 0.00 2.41 1.00 2.36 0.00 68 E9_Aa NovelBoundary 0 0.00 2.57 0.00 3.36 0.00 9.71 26.81 2.38 1.79 0.00 0.00 0.00 20.45 9.71 4.45 0.00 17.58 2.11 0.00 3.26 2.72 14.94 0.00 69 ER9a ExonRegion 1 0.80 24.57 7.36 11.86 23.19 46.71 42.91 9.31 21.61 10.39 1.70 26.20 106.93 124.24 24.48 22.52 85.09 20.34 4.11 41.70 27.98 106.98 78.38 70 E9_Da KnownBoundary 0 0.00 5.26 0.00 12.25 8.66 13.63 17.31 2.55 1.65 1.26 0.00 6.30 27.60 17.25 8.90 8.03 25.25 3.94 0.00 10.67 6.12 15.19 0.00 71 E9a_E10a KnownJunction 0 0.00 21.58 0.00 2.03 15.45 55.65 23.27 0.00 13.77 9.03 4.16 12.60 70.61 93.71 18.42 11.88 54.14 11.03 0.00 19.37 26.93 109.49 40.89 72 ER9b ExonRegion 0 1.59 3.17 0.00 4.67 2.09 11.52 12.91 0.94 0.47 1.01 0.00 2.23 18.14 13.69 3.37 2.40 9.03 5.05 0.00 4.07 4.50 4.50 0.04 73 E9_Db NovelBoundary 0 0.00 2.70 2.84 0.00 0.00 2.84 16.38 2.55 3.01 0.00 0.00 16.66 13.64 15.01 14.09 0.00 17.67 0.00 3.48 5.75 2.72 5.88 3.76 74 I9 Intron 0 0.93 5.68 2.97 6.66 5.92 7.66 20.30 1.88 4.29 1.87 0.05 2.34 31.33 10.80 4.89 2.96 10.83 2.66 1.39 8.89 1.61 10.37 2.64 75 I9_SR1 SilentIntronRegion 0 0.93 5.69 2.98 6.67 5.92 7.67 20.32 1.88 4.30 1.87 0.05 2.34 31.36 10.81 4.90 2.96 10.83 2.66 1.39 8.90 1.61 10.38 2.64 76 E10_Aa NovelBoundary 0 0.00 0.00 0.00 11.49 10.95 17.04 36.88 2.22 6.80 3.60 0.00 0.00 6.82 27.84 17.80 4.36 4.39 7.25 0.00 17.45 0.00 25.53 7.77 77 ER10a ExonRegion 0 1.60 19.49 6.61 19.21 21.52 50.88 58.84 6.16 24.88 12.12 4.02 29.98 71.17 136.27 29.32 31.69 84.77 37.86 2.74 38.31 22.57 122.45 72.85 78 E10a_E11a KnownJunction 0 0.00 9.27 11.80 19.34 21.05 73.25 64.57 6.82 21.56 4.27 1.95 12.30 79.54 130.61 42.65 40.25 105.28 58.74 9.60 38.22 33.24 107.28 68.12 79 ER11a ExonRegion 0 1.09 29.56 10.10 18.51 10.45 46.01 46.30 9.49 28.12 7.88 3.32 15.21 58.44 129.40 50.99 37.66 98.62 57.99 10.53 44.94 34.10 99.21 65.23 80 E11_Da NovelBoundary 0 0.00 0.00 1.57 0.00 0.00 5.28 18.59 0.00 0.00 0.00 2.63 6.30 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81 E11a_E12a KnownJunction 0 3.33 31.31 7.10 19.15 28.01 59.34 54.81 8.30 17.25 6.29 10.00 6.00 66.39 119.20 54.76 37.60 96.40 68.73 4.80 55.22 35.83 109.98 46.86 82 ER12a ExonRegion 0 4.64 19.23 8.71 20.79 11.02 66.30 47.13 10.17 25.72 11.52 2.81 8.74 60.50 124.79 46.45 29.88 112.38 45.66 12.54 44.58 41.45 96.60 56.86 83 E12a_E13a KnownJunction 0 0.00 15.85 8.46 23.11 8.15 68.43 46.77 12.45 30.56 11.98 2.47 12.30 93.83 125.96 57.98 51.01 110.43 58.12 0.00 41.67 32.49 174.21 82.29 84 ER13a ExonRegion 0 0.00 19.00 10.16 19.41 18.68 47.24 45.78 8.33 25.51 8.29 0.83 8.18 64.80 107.95 26.06 22.11 70.89 28.02 5.94 34.91 18.27 96.11 41.63 85 E13a_E14a KnownJunction 0 0.00 11.45 7.07 16.22 11.38 72.52 47.25 2.14 18.84 6.85 0.00 43.06 28.24 88.41 29.67 28.03 69.94 29.39 0.00 21.41 7.41 109.12 48.91 86 ER14a ExonRegion 0 1.87 17.92 9.24 24.39 25.77 56.29 57.53 8.79 34.04 14.05 3.31 14.15 75.04 105.63 38.48 19.80 63.44 19.67 9.16 28.76 14.75 117.67 46.37 87 IG19_AR1 ActiveIntergenicRegion 0 3.59 17.56 8.35 19.95 34.00 56.56 47.78 11.78 25.88 11.87 0.66 16.79 60.07 66.08 32.55 20.65 43.04 10.59 2.16 24.51 4.85 110.14 31.35 88 IG19_AR2 ActiveIntergenicRegion 0 7.21 68.14 23.46 56.32 79.01 128.69 84.76 22.63 39.32 25.74 1.72 13.30 68.85 69.68 71.06 13.22 31.90 8.47 8.35 23.17 5.90 167.37 31.41