Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP1-167A14.1 Gene 0 12.90 10.79 1.94 5.92 13.47 5.10 10.52 5.46 2.68 4.53 11.78 11.88 9.65 19.54 9.92 25.20 19.24 10.22 3.38 15.78 0.58 0.83 1.17 2 444102 Transcript 0 13.85 7.27 1.64 4.73 10.46 2.21 5.80 3.76 1.10 1.91 8.16 6.52 7.91 12.70 5.00 17.47 12.43 6.16 1.62 10.34 0.30 1.15 0.52 3 ER1a ExonRegion 0 0.79 0.70 0.00 2.10 1.84 2.53 4.60 1.78 0.00 0.59 13.99 1.14 1.33 17.72 7.29 26.63 20.68 13.28 5.49 9.53 1.50 0.72 1.01 4 E1_Da NovelBoundary 0 0.00 0.00 2.87 1.80 0.00 0.00 2.25 0.00 3.15 3.06 18.43 0.00 6.17 16.30 0.00 15.38 33.01 2.03 3.86 11.12 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 0.00 0.00 0.00 0.00 6 I1 Intron 0 10.96 15.29 7.55 9.72 20.52 6.42 25.85 8.43 3.63 10.82 18.90 48.90 37.26 47.11 21.43 46.11 28.18 8.86 4.96 37.14 0.45 0.73 1.45 7 I1_AR1 ActiveIntronRegion 0 0.02 1.14 0.35 1.56 0.00 0.35 3.28 0.00 1.02 0.99 5.27 0.69 3.13 26.35 3.20 32.13 16.94 12.22 3.68 10.23 0.05 0.00 1.13 8 I1_SR1 SilentIntronRegion 0 0.99 0.50 0.22 0.48 0.64 0.22 2.54 0.00 0.24 1.83 1.57 0.42 0.92 16.08 4.42 15.84 10.73 4.79 0.00 7.85 0.49 0.00 0.35 9 I1_AR2 ActiveIntronRegion 0 3.88 11.19 4.02 3.73 7.85 3.36 29.63 2.84 1.35 3.76 20.57 55.04 52.23 80.17 20.10 62.12 37.54 20.90 7.01 63.25 0.00 0.76 2.15 10 I1_SR2 SilentIntronRegion 0 14.34 12.15 0.73 2.40 23.45 2.19 31.65 1.97 1.44 2.72 6.16 47.35 40.23 41.94 10.95 40.26 31.56 4.00 1.27 40.69 0.88 0.83 0.00 11 I1_AR4 ActiveIntronRegion 0 19.02 20.49 17.41 17.22 29.43 12.64 60.61 10.29 4.43 15.07 28.71 147.37 88.16 65.96 42.26 63.66 56.59 9.76 8.77 82.54 0.00 2.45 2.31 12 I1_SR4 SilentIntronRegion 0 10.53 6.78 5.45 7.46 14.20 7.85 28.16 5.61 1.40 8.76 17.41 97.78 75.39 56.46 22.44 27.36 26.52 2.90 3.28 44.05 1.28 2.76 0.00 13 I1_SR5 SilentIntronRegion 0 4.99 13.19 6.46 1.20 20.51 3.24 23.42 5.32 1.09 4.53 23.36 65.69 34.02 58.64 23.95 44.68 26.27 7.32 7.51 34.50 1.30 1.23 0.87 14 I1_AR7 ActiveIntronRegion 0 10.01 11.12 12.96 12.01 13.07 4.34 34.25 3.81 2.72 10.60 29.14 71.46 30.74 61.64 29.01 43.06 22.45 8.03 7.52 43.72 0.00 0.62 0.43 15 I1_SR6 SilentIntronRegion 0 11.49 15.84 8.97 9.82 18.51 4.98 27.44 7.15 4.19 9.79 23.25 46.39 32.65 51.42 21.20 46.18 28.79 8.89 5.74 39.10 0.65 0.45 1.11 16 I1_AR8 ActiveIntronRegion 0 16.19 25.68 6.79 17.17 39.28 12.35 27.97 20.75 6.21 22.95 14.25 57.99 65.79 38.81 23.30 47.62 20.44 5.75 2.16 35.70 0.00 0.78 1.14 17 I1_SR7 SilentIntronRegion 0 10.83 17.41 5.19 8.99 25.35 8.70 16.28 10.91 3.62 11.65 15.56 17.56 21.48 40.60 21.55 56.43 31.33 12.28 5.14 25.55 0.44 0.73 3.51 18 E2_Aa NovelBoundary 0 3.78 26.84 0.00 3.33 19.52 13.80 15.19 17.00 2.58 6.34 4.53 7.65 6.49 28.90 9.64 31.36 8.79 1.95 0.00 21.41 3.15 0.00 3.50 19 ER2a ExonRegion 0 12.53 3.42 1.47 2.62 6.37 0.00 3.31 2.83 0.00 0.16 2.16 10.82 8.54 20.30 4.18 13.79 13.93 2.66 0.00 15.62 0.00 1.04 0.00 20 E2_Da NovelBoundary 0 15.19 26.71 5.26 8.56 15.70 2.61 22.74 14.54 1.65 11.98 20.85 30.31 6.82 24.43 27.94 59.90 27.21 8.12 0.00 25.50 0.00 0.00 0.00 21 E2a_E3a KnownJunction 0 33.34 11.51 3.13 9.09 19.52 0.00 3.93 5.09 0.00 0.00 9.37 0.00 13.15 4.71 0.00 19.82 4.49 5.06 0.00 5.75 0.00 3.12 0.00 22 I2 Intron 0 7.69 6.80 1.89 2.34 8.49 5.08 7.10 3.57 2.76 10.85 11.60 8.73 5.89 15.66 8.59 41.67 22.28 11.29 3.12 11.78 0.89 0.00 0.85 23 I2_SR1 SilentIntronRegion 0 4.78 7.93 0.41 0.10 1.72 2.87 6.62 0.62 0.67 4.47 6.05 9.99 2.65 18.74 7.36 32.85 8.13 4.26 0.00 4.58 1.70 0.00 0.00 24 I2_AR1 ActiveIntronRegion 0 10.73 9.99 0.88 2.80 11.96 6.65 11.37 4.16 2.95 11.41 15.48 13.60 8.29 18.95 13.32 52.23 27.07 12.66 4.01 15.37 0.67 0.00 1.85 25 I2_SR2 SilentIntronRegion 0 5.15 3.77 2.96 2.12 5.89 3.83 3.22 3.28 2.77 10.90 8.51 4.13 3.97 12.37 4.33 32.73 19.13 10.65 2.58 9.12 1.02 0.00 0.00 26 E3_Aa NovelBoundary 1 68.68 32.63 6.21 2.90 38.62 2.90 22.08 20.33 6.02 19.64 17.06 20.26 6.82 15.01 10.38 88.10 16.92 36.89 16.66 29.15 0.00 0.00 0.00 27 ER3a ExonRegion 0 22.58 20.74 3.59 9.82 24.57 8.50 17.14 9.08 5.52 8.81 12.60 20.65 16.53 20.77 13.54 27.11 19.52 9.82 2.61 20.78 0.00 0.86 1.60 28 IG30 Intergenic 0 8.76 4.91 1.57 5.63 11.25 6.05 5.23 10.23 2.98 7.33 7.96 4.18 5.30 8.78 5.30 12.55 7.98 5.39 2.48 7.47 0.46 0.57 1.05 29 IG30_AR5 ActiveIntergenicRegion 0 23.08 16.34 1.53 7.21 15.71 7.08 11.98 10.79 5.29 6.58 9.38 9.87 14.76 12.23 7.79 40.84 20.51 7.15 1.60 22.10 0.74 1.05 0.99 30 IG30_AR3 ActiveIntergenicRegion 0 2.12 10.17 0.00 13.50 20.77 0.00 5.67 6.42 4.71 4.48 2.95 21.65 17.64 5.26 7.32 8.92 5.97 3.78 0.00 8.11 0.00 2.08 0.00 31 IG30_AR2 ActiveIntergenicRegion 0 12.47 4.83 2.43 8.00 16.16 4.78 7.27 16.38 3.71 12.47 7.65 3.43 6.84 12.72 6.18 12.79 8.63 4.53 4.91 5.37 0.27 0.50 1.39 32 IG30_SR2 SilentIntergenicRegion 0 8.27 3.69 1.35 10.04 17.89 8.09 6.05 16.06 3.01 13.15 15.82 3.73 4.63 12.14 8.05 10.07 9.78 6.79 2.35 11.31 1.28 0.72 1.02 33 IG30_AR1 ActiveIntergenicRegion 0 11.39 4.24 2.91 5.49 12.67 14.25 4.30 15.14 4.43 8.37 12.37 2.38 4.61 11.60 5.72 14.68 8.59 11.85 5.13 6.51 0.28 0.53 2.63