Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SYTL3 Gene 0 38.90 2.88 3.13 3.90 15.18 9.51 4.67 17.25 17.38 5.23 39.86 22.28 20.98 82.07 55.87 34.50 66.03 1.44 3.27 3.30 5.39 6.73 14.08 2 360448 Transcript 0 1.93 0.74 0.00 0.00 0.17 0.05 0.99 0.00 0.25 0.00 6.11 0.87 0.59 13.68 5.33 8.95 8.46 0.00 0.00 0.00 0.00 0.00 0.00 3 469735 Transcript 0 6.86 0.88 0.01 1.78 13.96 6.11 8.01 5.99 11.75 1.11 27.27 16.00 11.47 50.35 17.32 16.91 39.69 0.28 0.00 2.53 3.79 0.45 5.79 4 297239 Transcript 0 25.96 0.17 0.49 0.94 11.64 6.46 1.35 14.81 11.93 2.33 26.06 18.76 24.36 79.80 25.56 28.49 58.37 0.65 2.90 0.45 6.01 5.41 10.60 5 367081 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 3.86 1.47 0.00 0.00 0.33 0.09 1.99 0.00 0.49 0.00 12.23 1.73 1.17 27.37 10.66 17.91 16.92 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 44.53 0.00 0.00 1.43 28.44 24.25 17.80 0.00 8.07 0.00 42.59 6.15 42.04 69.28 30.78 44.43 38.24 0.00 0.00 0.00 0.00 0.00 31.93 8 E1a_E3a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.60 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 23.62 1.87 0.00 0.65 14.34 13.86 9.59 0.00 5.98 0.00 34.64 5.20 24.20 52.17 21.12 36.62 35.52 0.00 0.00 0.00 0.00 0.00 17.85 10 ER2a ExonRegion 0 12.11 1.13 1.03 2.12 18.79 11.65 6.90 0.00 11.28 1.40 32.41 11.98 15.32 45.85 13.70 28.00 36.16 0.06 1.31 2.67 2.50 0.76 15.01 11 E2a_E3a KnownJunction 0 3.63 0.00 0.00 0.00 11.38 8.52 0.00 0.00 6.34 4.81 17.64 25.66 13.64 33.85 26.58 10.68 26.46 0.00 4.24 3.00 0.00 3.00 0.00 12 I2_AR3 ActiveIntronRegion 0 13.58 0.77 0.00 0.77 1.96 1.31 1.03 2.94 3.88 0.80 0.00 4.17 0.00 0.00 0.78 3.39 3.77 0.00 0.00 0.81 0.00 0.00 1.12 13 ER3a ExonRegion 0 0.25 2.75 3.10 0.67 4.51 5.43 1.84 2.58 11.14 3.78 39.87 8.83 6.62 50.67 33.56 11.01 36.57 2.43 0.87 1.67 1.77 1.72 8.87 14 E3_Ab KnownBoundary 0 0.00 6.38 3.67 0.00 3.57 4.66 4.33 2.51 10.13 1.56 46.06 0.00 6.33 41.97 32.39 7.86 38.80 0.00 0.00 0.00 3.15 3.12 7.77 15 E3_Ac KnownBoundary 0 3.70 0.00 3.67 2.06 0.00 5.17 0.00 2.51 13.57 0.00 54.22 6.30 0.00 47.44 28.56 32.04 35.53 2.57 0.00 2.68 8.71 0.00 19.63 16 ER3b ExonRegion 1 3.02 4.07 4.90 2.24 1.91 5.50 2.65 3.46 16.32 1.15 69.45 7.42 2.68 69.26 35.64 23.78 41.73 1.85 0.00 2.43 8.66 2.08 20.14 17 ER3c ExonRegion 0 8.47 0.28 6.64 2.73 1.19 3.01 0.26 3.74 18.46 0.38 58.31 11.67 11.59 81.34 43.84 41.94 41.81 1.85 0.00 4.26 6.55 0.75 20.07 18 E3_Da NovelBoundary 0 13.71 3.35 4.17 3.73 2.97 0.00 0.00 3.82 11.92 0.00 21.27 0.00 12.01 64.39 42.15 36.74 29.64 0.00 0.00 2.68 0.00 0.00 9.82 19 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E3b_E4a KnownJunction 0 7.41 0.00 8.31 1.53 4.24 0.00 0.00 4.31 14.09 0.00 35.75 18.76 25.16 81.52 41.66 59.98 52.73 1.66 0.00 0.00 2.97 2.63 26.46 21 ER3d ExonRegion 0 10.05 0.00 6.82 2.13 2.68 0.57 0.00 1.73 15.36 0.00 39.14 11.09 18.17 88.62 40.07 54.98 51.16 1.96 0.00 1.86 2.48 1.56 16.70 22 ER4a ExonRegion 0 7.16 1.65 4.14 1.69 9.00 3.84 3.24 3.65 13.15 0.00 33.53 18.42 18.83 71.10 25.14 42.36 45.06 3.02 0.00 6.01 1.54 1.29 15.15 23 E4_Da KnownBoundary 1 0.00 0.00 0.00 0.00 34.38 20.78 10.86 6.04 7.58 0.00 12.00 49.07 24.67 37.67 23.86 21.19 26.09 2.57 0.00 8.50 0.00 0.00 3.59 24 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 0.00 0.00 3.53 0.00 7.53 0.00 0.00 7.18 4.45 0.00 8.70 0.00 0.00 0.00 2.41 0.00 0.00 25 ER4b ExonRegion 0 6.86 0.88 0.01 1.78 13.96 6.11 8.01 5.99 11.75 1.11 27.27 16.00 11.47 50.35 17.32 16.91 39.69 0.28 0.00 2.53 3.79 0.45 5.79 26 E4_Db NovelBoundary 0 17.19 6.38 0.00 1.30 7.30 0.00 2.25 17.13 16.17 2.74 21.85 7.50 27.92 43.15 24.23 23.93 51.33 1.87 0.00 0.00 6.24 8.39 0.00 27 I4 Intron 0 10.38 0.00 0.00 2.66 11.37 3.00 6.49 5.91 12.03 1.12 24.01 11.74 17.23 64.34 26.33 19.43 48.56 0.90 1.04 0.00 3.60 5.45 8.64 28 I4_AR1 ActiveIntronRegion 1 10.51 0.00 0.00 2.69 11.52 3.04 6.58 5.97 12.19 1.13 24.32 11.89 17.45 65.12 26.64 19.69 49.19 0.91 1.05 0.00 3.65 5.51 8.75 29 E5_Aa NovelBoundary 0 17.34 0.00 1.66 4.13 3.48 2.38 0.00 9.16 18.20 1.10 22.43 30.76 0.00 65.69 23.12 28.03 64.70 1.62 0.00 0.00 11.55 11.27 12.80 30 ER5a ExonRegion 0 13.64 1.19 3.00 1.34 9.37 4.30 4.75 13.41 13.42 2.29 42.15 23.94 19.00 90.67 41.65 24.97 63.08 2.45 0.93 1.25 3.61 5.58 8.08 31 E5a_E6a KnownJunction 1 6.08 0.00 2.72 5.03 7.64 0.00 1.90 9.04 9.03 1.67 27.95 32.41 13.31 99.12 9.27 22.73 63.21 0.00 0.00 0.00 5.62 4.90 12.04 32 I5 Intron 0 8.59 0.96 0.68 3.02 5.43 1.43 3.45 6.28 10.15 1.73 2.75 5.57 6.04 10.25 7.55 8.34 15.07 1.27 1.19 0.65 1.19 0.92 3.58 33 I5_AR1 ActiveIntronRegion 0 8.60 0.96 0.68 3.03 5.44 1.43 3.45 6.28 10.16 1.74 2.75 5.58 6.04 10.26 7.56 8.36 15.09 1.27 1.19 0.65 1.19 0.92 3.58 34 E6_Aa NovelBoundary 0 27.71 0.00 2.96 3.10 3.14 5.22 5.87 2.55 12.50 1.10 2.53 17.41 0.00 19.07 14.22 3.33 16.08 0.00 0.00 5.37 0.00 0.00 11.35 35 ER6a ExonRegion 0 27.22 0.47 3.24 1.71 8.72 6.24 2.69 13.01 13.57 2.18 31.75 19.91 11.07 84.94 39.17 29.23 59.39 1.07 4.22 3.04 4.41 7.07 10.82 36 E6a_E7a KnownJunction 0 26.30 0.00 1.42 1.30 33.45 10.51 6.01 13.43 10.36 0.00 37.80 43.06 14.12 105.19 52.17 55.54 94.06 0.00 7.34 2.43 2.90 11.02 22.02 37 ER7a ExonRegion 0 35.75 0.00 1.87 0.27 24.21 14.28 3.16 20.74 15.14 3.44 52.90 25.11 7.58 104.97 40.80 71.47 90.24 2.81 5.24 1.44 11.19 7.08 20.56 38 E7a_E8a KnownJunction 0 66.23 0.00 1.83 0.00 15.28 20.44 0.00 26.82 18.11 2.26 43.01 22.36 18.34 97.83 39.80 75.54 80.97 6.09 4.14 0.00 6.30 5.39 25.52 39 I7_AR3 ActiveIntronRegion 0 25.36 3.96 0.63 2.26 9.54 1.07 1.51 6.36 5.91 0.50 1.20 1.12 4.02 2.53 6.92 7.14 7.76 0.00 1.86 0.62 0.43 1.22 3.15 40 I7_SR4 SilentIntronRegion 0 10.69 2.09 0.87 2.06 7.39 1.13 1.19 6.74 6.74 0.49 0.72 1.22 3.19 1.26 3.64 4.97 4.19 0.00 0.37 0.34 0.70 0.85 2.28 41 ER8a ExonRegion 0 46.73 2.58 0.85 2.49 6.23 20.67 3.23 20.28 22.04 3.11 44.53 17.23 28.86 91.51 40.51 38.18 84.74 4.55 3.80 2.86 3.39 10.14 17.06 42 E8a_E9a KnownJunction 0 75.72 5.99 0.00 3.83 3.65 17.49 8.26 16.18 27.40 10.61 70.33 50.12 32.79 95.06 61.19 36.57 131.18 2.28 0.00 3.26 6.24 11.33 16.73 43 ER9a ExonRegion 0 27.54 1.05 1.33 1.07 7.57 10.66 3.39 27.56 26.10 9.81 43.68 26.16 27.60 81.30 37.72 40.17 92.19 1.66 6.10 0.97 9.76 6.85 10.74 44 E9a_E10a KnownJunction 0 16.37 0.00 1.71 0.00 14.35 7.44 0.00 25.51 16.49 0.00 17.64 23.71 25.97 81.17 27.44 28.54 59.65 1.74 4.71 0.00 12.05 3.12 3.24 45 E9a_E11a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 1.67 2.53 0.00 0.00 24.31 4.45 0.00 16.27 0.00 0.00 0.00 0.00 0.00 0.00 46 E9a_E12a KnownJunction 0 6.15 0.00 1.71 0.00 4.16 5.79 0.00 6.20 6.94 4.57 22.11 6.30 0.00 23.96 0.00 3.59 23.19 0.00 0.00 0.00 0.00 5.94 0.00 47 I9_AR1 ActiveIntronRegion 0 11.80 0.55 0.75 0.84 3.28 0.50 1.44 1.40 2.50 0.70 2.89 4.23 5.48 6.03 5.94 11.72 11.22 0.00 0.43 0.29 0.90 0.57 4.39 48 I9_SR2 SilentIntronRegion 0 0.00 0.00 0.00 0.97 1.32 3.63 1.31 1.28 0.00 0.00 2.87 0.00 0.00 3.22 8.11 14.72 14.71 0.00 0.00 0.00 0.00 0.00 1.45 49 E10_Aa NovelBoundary 0 5.63 0.00 1.80 3.50 22.58 2.90 0.00 10.80 3.76 1.48 0.00 0.00 0.00 2.47 11.37 3.25 8.04 0.00 0.00 0.00 0.00 0.00 3.16 50 ER10a ExonRegion 0 37.99 0.00 0.76 0.83 12.50 6.04 5.09 21.09 16.07 0.39 27.40 24.28 21.25 82.81 30.89 42.02 59.25 1.52 2.14 1.37 5.24 4.38 8.18 51 E10_Da NovelBoundary 0 6.67 0.00 0.00 2.00 19.27 0.00 2.25 8.71 3.04 0.00 0.00 12.00 0.00 0.00 9.89 12.39 16.92 0.00 0.00 0.00 0.00 0.00 4.35 52 E10a_E11a KnownJunction 1 19.34 0.00 0.00 1.96 19.61 0.00 0.00 10.60 11.75 1.48 29.32 25.81 34.25 85.41 21.14 12.30 66.20 0.00 4.61 0.00 2.41 5.45 6.91 53 E10a_E12a NovelJunction 0 19.78 2.57 0.00 0.00 0.00 2.90 0.00 9.24 5.93 6.02 0.00 0.00 0.00 2.47 4.45 4.02 0.00 0.00 0.00 0.00 0.00 0.00 4.18 54 E11_Aa NovelBoundary 0 10.82 0.00 2.72 3.43 0.00 0.00 0.00 1.52 7.81 0.00 2.68 0.00 12.01 12.24 8.90 6.66 19.82 0.00 0.00 0.00 5.00 0.00 12.46 55 ER11a ExonRegion 0 29.14 0.83 0.00 1.90 11.75 10.14 1.64 7.48 9.48 2.50 34.98 13.72 33.51 75.45 39.41 25.51 69.90 0.00 3.03 0.87 7.95 6.28 15.11 56 E11_Da NovelBoundary 0 7.04 0.00 1.66 5.29 0.00 0.00 2.16 1.73 9.35 0.00 0.00 13.35 6.66 8.95 8.90 0.00 12.25 0.00 0.00 0.00 0.00 0.00 0.00 57 E11a_E12a KnownJunction 1 26.97 0.00 0.00 0.00 0.00 8.69 0.00 9.36 5.87 7.25 20.95 6.30 6.82 74.17 8.90 34.09 36.84 0.00 0.00 0.00 2.41 7.84 19.55 58 E12_Aa NovelBoundary 1 34.08 0.00 1.42 4.49 3.48 2.90 10.78 11.30 5.64 0.00 2.16 0.00 34.09 12.01 4.45 17.00 13.74 0.00 0.00 0.00 2.78 0.00 0.00 59 ER12a ExonRegion 0 70.52 3.43 1.92 5.06 24.08 11.53 7.27 26.35 23.19 13.51 65.66 35.82 40.89 105.95 62.11 41.59 103.48 1.38 7.22 4.29 7.08 11.70 14.64 60 E12a_E13a KnownJunction 0 74.90 5.99 1.48 7.92 35.99 13.74 2.21 32.61 21.50 18.32 41.43 32.86 47.56 88.70 31.77 37.08 74.43 2.11 3.86 5.69 3.09 24.80 17.33 61 ER13a ExonRegion 0 73.31 4.36 5.89 9.85 26.13 14.48 8.08 34.46 35.13 12.43 62.19 53.96 47.79 97.15 70.34 49.06 88.22 0.27 6.21 4.17 4.88 15.98 13.90 62 E13a_E14a KnownJunction 0 127.36 0.00 8.22 7.33 37.44 15.45 12.63 27.36 26.59 6.26 93.55 25.51 54.22 78.76 75.28 56.57 73.12 0.00 12.80 3.20 2.59 28.41 7.60 63 ER14a ExonRegion 0 69.91 4.66 5.59 7.05 27.64 11.43 6.35 17.23 25.73 6.83 45.21 45.73 30.55 95.52 93.99 40.86 79.67 1.11 4.70 2.11 5.76 8.37 15.20 64 E14a_E15a KnownJunction 0 56.16 2.89 0.00 8.99 15.87 10.96 4.15 17.58 18.23 2.74 39.33 30.31 33.44 73.87 61.81 38.11 58.72 1.87 3.76 8.56 5.99 0.00 12.29 65 ER15a ExonRegion 0 66.74 7.50 1.66 4.18 12.11 9.78 4.24 19.37 15.85 7.49 43.85 23.77 17.00 98.26 79.22 33.77 78.62 1.11 1.12 4.90 5.37 7.90 15.51 66 E15a_E16a KnownJunction 0 100.61 0.00 0.00 11.22 28.61 6.81 9.85 30.35 8.16 8.73 39.22 6.00 0.00 84.23 58.47 20.25 57.41 1.82 0.00 9.01 2.59 4.65 26.80 67 ER16a ExonRegion 0 74.98 3.09 0.09 4.42 18.02 23.34 6.17 30.38 14.97 9.73 50.93 19.32 15.80 100.22 72.39 50.67 84.86 1.81 1.89 4.56 7.94 4.99 20.50 68 E16a_E17a KnownJunction 0 57.12 12.76 0.00 0.00 35.31 26.18 4.50 32.82 16.61 7.87 64.49 25.96 20.13 98.89 80.35 60.75 101.45 2.57 4.05 3.07 2.41 3.00 16.48 69 ER17a ExonRegion 0 53.80 3.85 6.79 8.24 25.72 13.92 3.19 42.64 16.82 12.50 49.65 31.15 20.35 115.99 90.31 70.81 75.18 0.75 3.99 6.86 6.42 11.69 21.10 70 E17a_E18a KnownJunction 0 63.86 0.00 2.93 8.96 24.36 16.52 6.14 37.79 16.00 9.54 57.01 36.76 13.64 124.79 120.03 70.84 102.01 0.00 13.27 0.00 2.35 6.06 19.12 71 ER18a ExonRegion 0 64.24 5.04 4.83 9.32 20.22 8.81 4.92 25.72 22.03 8.21 44.92 21.02 20.54 99.93 108.15 45.58 82.94 2.02 4.73 5.92 9.10 7.95 14.44 72 E18a_E19a KnownJunction 0 94.61 0.00 9.96 6.29 3.40 16.87 0.00 14.66 22.60 7.84 44.54 5.40 13.64 76.70 103.47 30.68 64.24 2.49 8.85 2.43 8.09 5.33 15.28 73 ER19a ExonRegion 0 36.87 5.46 7.48 5.09 14.90 10.93 3.72 17.08 20.55 4.33 32.45 15.53 23.92 80.73 91.53 24.65 69.75 1.61 5.70 4.84 6.52 9.26 20.74 74 E19_Da KnownBoundary 0 18.15 0.00 2.60 3.96 7.56 4.43 2.25 15.48 14.09 2.34 17.06 6.30 14.77 29.43 40.92 7.69 29.36 0.00 3.95 3.00 9.39 16.78 8.02 75 ER19b ExonRegion 0 26.23 3.53 3.41 2.17 12.41 4.25 2.08 9.78 13.34 2.47 9.69 4.15 8.23 40.71 37.36 9.75 23.20 3.51 3.58 1.24 1.53 4.80 17.92 76 IG11 Intergenic 0 6.68 2.03 1.52 1.35 4.45 3.05 2.64 4.71 6.42 1.14 2.89 1.18 1.92 10.97 5.67 6.91 8.23 0.46 0.53 1.41 0.73 1.73 0.98 77 IG11_AR1 ActiveIntergenicRegion 0 10.52 2.57 2.64 2.10 7.27 4.87 4.12 6.06 8.56 1.29 4.75 1.10 3.56 11.67 5.54 10.30 9.50 0.85 0.23 1.74 0.68 1.47 0.07