Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BRP44L Gene 0 169.69 131.20 120.61 91.92 117.35 91.87 73.58 82.45 57.69 79.12 218.00 169.23 305.21 237.77 325.23 297.61 271.47 33.15 28.81 106.59 40.97 48.75 26.47 2 392123 Transcript 0 15.34 10.68 10.42 9.03 7.69 5.73 4.14 8.86 8.65 8.75 49.05 4.33 10.55 21.11 25.39 22.66 51.99 6.70 5.57 15.96 18.73 4.95 2.57 3 341756 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 4.66 0.00 0.00 0.00 0.00 0.00 0.00 4 360961 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 487218 Transcript 0 35.13 20.09 8.90 12.32 17.96 7.26 7.39 8.09 6.07 7.93 24.79 22.26 26.68 31.40 34.01 48.57 28.06 5.97 0.75 5.03 2.93 3.87 0.46 6 475708 Transcript 0 9.59 7.81 4.47 4.98 12.65 4.35 8.47 2.48 3.55 6.09 15.20 17.53 36.07 23.35 16.18 32.83 26.09 1.50 0.71 9.29 0.98 3.09 1.31 7 366868 Transcript 0 15.02 14.20 2.44 8.39 11.94 6.98 13.19 6.25 9.85 6.24 14.25 26.62 31.40 26.47 10.49 37.63 23.39 3.74 1.75 7.44 2.87 4.67 2.04 8 ER1a ExonRegion 1 132.48 74.17 17.33 7.24 50.36 98.70 66.96 5.14 7.50 8.57 142.29 0.00 17.12 111.07 248.96 194.87 213.47 6.66 21.25 53.31 67.25 20.64 23.08 9 E1_Ab KnownBoundary 1 541.50 232.06 72.71 56.34 220.12 285.01 271.25 54.34 65.45 63.74 577.41 0.00 32.95 427.22 787.20 1194.05 945.02 66.86 47.72 176.35 77.28 80.15 50.28 10 E1_Ac KnownBoundary 0 115.72 93.73 44.08 27.10 64.77 131.74 104.49 16.39 27.37 37.82 70.49 6.30 24.67 37.32 130.42 198.49 208.32 20.10 27.39 69.22 5.68 20.39 16.30 11 ER1b ExonRegion 1 275.53 163.15 43.72 19.14 110.31 212.55 182.53 10.53 22.23 31.17 355.65 3.54 25.16 273.37 441.91 676.56 645.78 13.02 31.13 111.31 50.28 53.70 37.91 12 ER1c ExonRegion 1 58.32 55.09 44.49 27.95 38.37 67.03 53.28 19.04 32.23 30.38 107.41 28.24 92.50 56.62 112.75 178.60 184.85 19.13 27.35 53.58 61.98 23.34 21.10 13 E1a_E2b KnownJunction 1 38.38 56.44 68.00 44.38 31.49 32.77 14.88 36.93 40.39 40.00 231.53 30.76 39.93 56.68 142.90 51.01 205.70 29.27 31.53 83.35 108.05 14.39 14.85 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I1 Intron 1 9.99 8.45 3.32 5.61 10.91 4.37 11.87 5.46 6.81 5.19 11.20 39.64 81.51 21.28 10.98 36.80 26.87 3.28 1.65 14.20 2.33 2.83 2.11 17 I1_AR1 ActiveIntronRegion 0 9.88 18.64 1.23 2.73 8.92 1.83 24.71 5.19 7.41 3.44 7.73 29.58 51.59 36.54 5.80 45.57 11.00 1.85 0.00 4.26 2.20 6.25 0.00 18 I1_AR2 ActiveIntronRegion 1 12.70 17.49 1.23 2.73 6.42 3.67 23.04 5.19 8.65 4.59 5.80 38.10 54.40 41.42 8.41 51.42 17.16 1.85 0.00 2.13 2.20 6.04 0.00 19 I1_AR3 ActiveIntronRegion 0 15.42 14.89 1.23 3.12 11.09 3.27 12.77 4.88 9.22 5.37 8.84 29.07 61.98 30.63 16.27 61.88 24.17 1.98 0.00 4.26 2.20 1.93 0.00 20 I1_AR4 ActiveIntronRegion 0 3.07 8.17 2.96 6.53 8.03 4.64 12.94 8.03 6.63 6.64 12.19 24.93 90.77 19.44 10.48 39.07 23.37 4.26 0.00 6.90 0.04 3.83 2.04 21 I1_AR5 ActiveIntronRegion 1 8.98 7.64 4.38 5.47 10.34 5.33 18.84 7.14 7.06 7.97 16.42 56.64 146.51 33.11 14.57 59.11 43.26 5.11 3.93 16.56 3.75 2.67 0.86 22 I1_SR2 SilentIntronRegion 1 7.41 7.61 2.75 4.90 4.76 4.80 15.74 3.70 11.63 5.56 10.54 44.65 121.54 21.78 7.18 35.33 32.67 3.51 2.39 9.65 1.00 4.15 2.68 23 I1_AR6 ActiveIntronRegion 1 5.15 5.43 2.73 6.32 6.86 5.45 12.76 3.46 4.46 3.89 11.12 38.07 110.87 21.90 10.64 34.97 25.09 1.69 1.19 14.75 0.62 3.95 2.47 24 I1_SR3 SilentIntronRegion 1 10.15 9.36 1.43 5.84 9.37 5.13 10.64 12.30 9.82 6.47 10.10 56.20 152.31 21.46 11.17 32.16 27.72 1.80 1.56 17.65 0.14 2.80 0.88 25 I1_AR7 ActiveIntronRegion 0 22.17 14.14 3.94 8.65 18.01 4.15 18.59 5.00 10.41 7.16 21.90 66.74 117.15 33.34 15.98 67.64 56.55 6.96 5.36 21.90 4.99 2.65 3.35 26 I1_SR4 SilentIntronRegion 0 32.07 14.66 9.67 10.72 28.92 2.52 20.73 10.31 16.53 4.70 15.22 66.32 101.39 32.08 20.70 63.06 35.80 4.60 1.59 24.56 5.73 0.64 3.68 27 I1_AR8 ActiveIntronRegion 0 37.96 25.25 6.45 7.96 27.42 6.92 17.84 4.26 8.92 3.86 13.28 37.53 80.15 22.66 11.73 50.86 27.59 8.76 1.68 22.17 3.51 2.86 2.07 28 I1_SR5 SilentIntronRegion 0 4.07 7.51 2.08 5.43 10.93 5.62 9.88 5.46 6.80 6.04 11.70 48.74 71.21 23.03 8.66 29.43 22.96 1.27 1.00 13.71 2.25 4.18 1.15 29 I1_AR9 ActiveIntronRegion 1 19.69 7.75 4.10 10.71 18.17 6.86 15.78 5.40 3.14 5.60 7.53 26.01 66.92 18.36 9.28 25.69 9.93 1.98 0.00 11.97 0.00 4.33 1.30 30 E2_Aa NovelBoundary 0 45.27 9.27 5.47 19.91 0.00 12.72 20.36 5.59 16.06 12.14 20.11 49.97 66.72 23.66 13.35 42.98 21.69 4.60 4.05 9.08 5.56 0.00 12.55 31 ER2a ExonRegion 0 15.02 14.20 2.44 8.39 11.94 6.98 13.19 6.25 9.85 6.24 14.25 26.62 31.40 26.47 10.49 37.63 23.39 3.74 1.75 7.44 2.87 4.67 2.04 32 E2_Da NovelBoundary 0 10.82 6.25 3.08 19.05 18.68 15.50 24.73 1.77 5.12 3.06 12.27 30.61 95.94 16.54 4.45 83.06 35.62 5.97 0.00 22.18 0.00 5.45 13.06 33 E2a_E4a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 0.00 34 E2a_E5a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E2a_E6b KnownJunction 0 31.49 16.31 3.13 3.40 11.21 10.05 14.71 14.62 6.05 7.58 15.06 12.60 0.00 7.06 17.80 40.76 9.16 2.57 0.00 2.94 5.44 0.00 4.35 36 ER2b ExonRegion 1 52.91 71.18 74.75 50.88 41.92 39.12 28.69 62.22 55.58 51.23 322.79 33.19 57.84 105.57 146.03 119.88 337.79 39.42 35.04 106.38 137.36 23.61 17.62 37 I2 Intron 0 7.21 12.37 5.03 7.80 10.66 9.56 12.47 7.09 10.13 7.80 29.54 49.91 104.65 41.09 22.04 61.57 28.22 3.73 0.46 15.57 2.24 6.34 3.40 38 I2_AR1 ActiveIntronRegion 0 7.22 12.41 5.04 7.82 10.69 9.59 12.50 7.11 10.16 7.82 29.62 50.05 104.94 41.20 22.11 61.75 28.29 3.75 0.46 15.61 2.24 6.36 3.41 39 E3a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 7.39 0.00 0.00 0.00 0.00 0.00 0.00 40 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 41 I3 Intron 0 30.05 23.52 7.20 6.41 28.14 14.94 23.67 8.13 10.16 8.54 40.65 38.56 76.52 64.14 33.47 83.60 55.54 4.11 2.51 16.22 3.48 8.22 4.63 42 I3_AR1 ActiveIntronRegion 0 30.35 23.77 7.28 6.47 28.43 15.10 23.91 8.21 10.27 8.63 41.07 38.97 77.26 64.80 33.82 84.47 56.12 4.15 2.54 16.39 3.51 8.30 4.68 43 E4_Aa NovelBoundary 0 20.82 16.77 9.58 26.04 15.70 36.00 17.18 19.02 22.80 27.61 69.54 42.91 148.53 59.16 37.09 76.13 60.59 12.48 0.00 17.64 5.62 12.00 12.63 44 ER4a ExonRegion 0 21.74 23.44 13.41 14.93 33.62 13.05 23.57 7.45 10.66 18.26 45.60 52.60 108.22 70.06 48.54 95.25 69.30 4.51 2.13 27.86 2.94 9.28 3.92 45 E4a_E6b KnownJunction 0 3.26 0.00 0.00 0.00 4.33 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 4.58 0.00 0.00 0.00 0.00 0.00 0.00 46 I4 Intron 0 32.50 46.34 10.57 21.60 36.15 15.14 22.51 14.70 16.70 12.63 29.53 63.03 76.97 39.40 27.55 52.35 33.48 1.96 1.70 13.46 1.72 8.04 1.69 47 I4_AR1 ActiveIntronRegion 0 21.73 16.71 3.13 5.56 15.53 10.67 12.69 4.41 5.03 5.84 26.46 50.24 81.40 34.01 26.64 49.81 31.61 3.78 0.00 9.47 2.26 4.99 0.00 48 I4_AR3 ActiveIntronRegion 0 25.84 43.45 10.69 23.50 35.07 14.59 22.53 16.54 18.90 13.32 34.98 68.42 79.40 42.10 25.14 52.22 37.82 1.37 2.37 15.42 1.85 7.51 2.33 49 I4_AR4 ActiveIntronRegion 1 57.43 65.52 14.47 26.31 54.30 19.83 29.11 15.43 20.29 14.84 12.43 62.31 61.14 34.65 38.32 46.70 18.08 2.36 0.00 9.22 1.95 11.25 1.30 50 I4_AR5 ActiveIntronRegion 0 60.54 78.67 14.40 23.22 47.43 18.85 26.79 14.31 12.47 13.93 17.50 44.75 74.86 34.13 32.50 63.23 25.38 3.22 1.27 10.44 0.00 11.56 0.00 51 E5_Aa NovelBoundary 0 120.10 104.06 21.14 36.96 50.17 7.72 26.67 23.25 13.57 12.01 46.01 59.27 77.11 94.77 69.23 78.36 67.88 5.55 0.00 8.95 5.13 0.00 0.00 52 ER5a ExonRegion 0 73.16 54.09 13.77 26.44 37.92 16.83 20.28 14.09 13.33 14.72 51.05 60.47 52.44 67.99 63.84 91.04 62.69 8.38 2.26 12.54 8.79 9.27 1.39 53 E5_Da NovelBoundary 0 85.79 38.35 15.23 29.57 61.46 15.56 56.70 31.59 21.24 19.18 34.06 42.01 43.67 53.74 79.86 96.47 44.04 13.27 16.19 12.21 3.15 6.12 4.35 54 E5a_E6b KnownJunction 0 32.23 6.18 12.92 8.46 15.96 4.94 1.90 8.13 4.89 9.05 23.32 6.30 27.60 26.19 38.20 51.44 21.51 9.53 0.00 2.56 0.00 2.33 0.00 55 ER6a ExonRegion 1 30.69 21.35 20.83 18.06 15.39 11.46 8.27 17.72 17.29 17.49 98.09 8.66 21.11 42.23 50.77 45.32 103.98 13.40 11.15 31.91 37.46 9.90 5.14 56 ER6b ExonRegion 1 181.71 114.62 165.64 128.41 116.03 64.11 62.25 89.56 85.07 112.48 613.09 105.94 145.98 553.08 620.93 701.45 716.19 104.01 85.14 290.18 124.37 64.16 91.07 57 E6a_E7a KnownJunction 1 340.43 157.01 272.26 178.33 140.24 70.87 72.16 111.76 101.33 139.55 321.50 120.19 175.96 781.16 1145.44 1613.25 516.60 187.83 129.13 326.36 89.70 95.71 170.98 58 E6a_E8a NovelJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 9.18 24.11 23.67 3.46 0.00 0.00 0.00 0.00 0.00 0.00 59 I6_AR2 ActiveIntronRegion 0 20.86 12.20 14.53 2.73 9.17 0.00 0.57 9.63 8.82 4.59 25.68 41.44 75.04 9.28 9.53 12.74 4.24 4.22 0.00 5.47 0.00 4.17 0.00 60 ER7a ExonRegion 1 308.60 203.45 234.27 167.65 230.98 260.96 153.99 127.97 106.21 120.94 462.47 111.00 189.79 449.44 586.86 759.05 548.07 125.23 73.50 239.05 103.28 69.26 61.47 61 E7a_E8a KnownJunction 1 552.17 476.03 279.06 155.52 149.07 306.36 281.01 133.57 112.47 117.71 472.12 122.59 206.80 583.03 610.55 458.00 621.88 81.41 38.12 284.24 99.40 78.13 48.83 62 ER8a ExonRegion 0 492.84 454.87 265.56 188.88 245.95 190.67 167.52 170.51 131.35 170.80 523.28 237.41 367.48 582.41 707.95 627.07 662.05 84.31 58.25 252.95 97.88 93.47 56.71 63 E8_Da KnownBoundary 0 403.33 212.33 285.80 245.72 381.58 239.63 228.32 187.30 124.45 211.03 455.48 256.43 466.69 439.46 752.21 567.54 369.80 49.91 44.90 254.97 41.33 105.26 32.69 64 ER8b ExonRegion 1 236.76 158.04 336.75 253.06 335.20 179.08 148.11 257.44 137.18 222.88 347.14 470.04 1085.28 495.36 706.20 523.68 405.49 49.44 57.87 189.03 41.35 123.83 50.90 65 E8_Db KnownBoundary 1 270.94 176.55 406.76 328.06 205.26 155.99 153.47 274.83 146.15 247.18 248.64 862.03 1398.93 621.35 1016.38 716.65 217.77 34.74 73.04 169.25 29.65 155.47 67.61 66 ER8c ExonRegion 1 256.30 242.05 283.55 218.95 179.17 128.74 98.61 218.99 116.38 189.55 253.12 481.38 725.42 324.33 567.08 289.34 270.46 15.61 35.69 140.08 21.47 120.60 26.00 67 E8_Dc KnownBoundary 1 589.51 408.94 257.29 184.66 189.39 147.76 113.76 195.31 107.12 135.33 204.42 384.73 878.51 199.66 366.77 240.79 304.07 8.58 28.05 98.56 15.01 140.29 24.67 68 ER8d ExonRegion 1 192.58 122.76 89.89 61.26 113.54 69.81 58.37 73.57 49.13 58.08 126.65 331.80 709.98 145.37 272.44 115.53 170.52 3.68 9.41 59.70 10.90 42.64 7.75