Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP3-388E23.1 Gene 0 4.86 12.40 3.71 8.80 17.97 38.90 20.13 20.95 40.35 6.95 7.52 12.58 9.61 2.74 0.54 11.82 5.25 4.88 9.57 17.49 9.93 18.05 22.58 2 444302 Transcript 0 3.77 8.53 3.18 6.22 12.20 29.48 13.70 15.78 26.99 4.55 4.81 7.95 4.73 1.73 0.50 6.76 3.02 2.36 7.11 10.83 6.14 11.00 14.24 3 ER1a ExonRegion 0 14.02 26.98 13.55 19.47 36.50 98.25 39.51 52.94 72.10 13.48 12.87 13.02 6.25 5.15 1.70 16.02 5.47 1.85 19.94 16.83 10.95 15.65 24.40 4 E1_Da NovelBoundary 0 66.75 47.69 18.15 29.13 67.57 122.37 84.22 116.28 149.07 21.68 15.69 5.70 14.45 2.12 0.00 16.75 13.37 10.99 46.59 29.72 13.53 37.05 19.55 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 30.31 43.76 22.23 29.71 62.09 98.17 50.09 75.94 131.08 15.31 8.29 17.69 8.96 3.24 1.79 20.03 10.11 8.80 19.51 26.07 9.28 33.66 32.83 7 Ix_AR1 ActiveIntronRegion 0 30.40 43.89 22.30 29.79 62.27 98.46 50.23 76.17 131.47 15.36 8.31 17.74 8.98 3.25 1.80 20.09 10.14 8.83 19.57 26.14 9.31 33.75 32.92 8 Ix Intron 0 6.00 11.69 1.92 9.37 17.54 39.04 15.49 22.31 48.94 9.41 3.29 9.59 6.93 2.10 0.46 9.38 3.34 4.73 10.70 15.41 8.38 24.46 24.01 9 Ix_AR1 ActiveIntronRegion 0 4.04 13.41 3.02 12.17 20.35 49.05 18.55 26.06 62.21 12.28 4.27 12.45 8.58 1.54 0.46 8.91 1.38 3.28 12.87 14.56 12.03 28.45 30.37 10 Ix_SR1 SilentIntronRegion 0 7.25 10.63 1.23 7.63 15.82 32.83 13.60 20.01 40.69 7.62 2.67 7.80 5.91 2.45 0.46 9.70 4.58 5.66 9.36 15.99 6.10 21.99 20.06 11 E2_Aa NovelBoundary 0 17.41 11.91 1.33 26.80 35.99 47.93 18.86 28.05 73.87 17.62 4.42 6.15 6.82 2.35 0.00 8.72 7.48 4.52 3.67 45.25 3.15 48.56 24.24 12 ER2a ExonRegion 0 2.51 6.40 1.51 5.59 10.60 28.66 13.57 14.67 30.68 3.33 4.51 15.45 4.47 1.00 0.80 4.66 3.88 3.30 10.22 20.97 10.39 21.97 26.45 13 E2_Da NovelBoundary 0 11.34 29.47 0.00 10.06 15.28 50.82 26.10 15.85 57.70 9.89 4.32 24.31 6.33 0.00 0.00 7.69 3.55 1.99 4.80 32.21 9.64 25.35 22.62 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 Ix Intron 0 4.23 9.25 1.22 6.20 9.21 18.52 14.19 12.87 30.75 3.22 3.97 6.30 6.69 1.96 0.00 8.58 4.40 4.95 10.43 17.60 6.98 20.12 28.52 16 Ix_SR1 SilentIntronRegion 0 11.03 10.98 0.68 3.78 6.97 23.21 14.05 12.47 22.61 2.54 1.80 5.36 4.21 1.05 0.00 2.77 1.84 0.86 6.52 17.05 3.28 17.45 10.93 17 Ix_AR4 ActiveIntronRegion 0 1.28 9.71 1.31 7.44 9.52 16.93 15.10 13.77 36.97 3.83 4.22 7.05 8.67 2.45 0.00 11.36 5.40 6.40 13.49 18.82 8.56 22.19 38.40 18 Ix_AR5 ActiveIntronRegion 0 2.12 4.07 1.23 2.97 5.59 9.50 7.22 12.10 41.66 3.44 9.66 12.99 0.00 1.03 0.00 17.56 7.50 12.93 12.45 21.66 7.81 26.14 62.74 19 Ix_AR6 ActiveIntronRegion 0 2.29 2.80 3.17 8.63 4.01 11.61 10.87 12.24 26.40 3.15 8.21 9.74 4.69 1.62 0.00 11.89 11.00 10.78 3.45 18.88 7.80 13.28 34.87 20 Ix_AR7 ActiveIntronRegion 0 2.12 3.14 2.45 8.18 19.95 24.01 13.48 10.68 22.46 1.88 8.61 1.57 5.97 0.59 0.00 11.89 9.90 7.39 3.19 15.47 14.42 18.94 22.96 21 Ix_SR3 SilentIntronRegion 0 2.12 4.07 2.45 8.18 25.73 26.24 15.38 9.71 18.53 1.15 11.60 0.00 4.69 1.87 0.00 11.89 6.86 8.24 6.37 11.78 14.24 21.48 21.23 22 Ix_AR8 ActiveIntronRegion 0 2.12 2.59 2.45 7.68 24.08 21.17 11.92 8.64 15.38 1.15 9.14 0.00 4.69 3.25 0.00 8.92 3.00 5.71 6.37 8.51 13.22 20.84 12.28 23 E3_Aa NovelBoundary 0 0.00 11.58 0.00 9.62 35.48 66.89 40.32 26.08 20.75 8.62 2.05 6.30 13.64 5.30 0.00 8.72 4.77 4.93 14.59 35.41 14.21 8.21 19.46 24 ER3a ExonRegion 0 2.33 9.28 0.86 6.03 13.90 20.48 15.40 11.32 32.17 5.92 6.69 11.26 12.94 2.52 0.00 13.10 5.72 6.67 5.38 16.34 9.37 17.38 20.34