Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-390P2.1 Gene 0 24.58 5.53 4.73 4.24 7.27 6.59 1.77 3.01 2.69 2.36 2.18 0.30 2.40 18.22 25.54 0.99 4.83 0.23 0.00 1.16 12.97 31.25 16.45 2 432673 Transcript 0 10.22 2.94 2.52 1.00 0.95 2.89 0.30 0.35 0.31 0.01 1.23 0.00 0.00 5.69 2.80 0.00 3.27 0.32 0.00 0.46 3.86 10.14 7.97 3 428044 Transcript 0 14.38 0.30 6.43 0.44 8.62 5.44 3.16 0.14 2.14 0.14 0.71 0.00 0.33 13.20 9.03 0.95 0.80 0.00 0.00 0.00 6.46 2.82 6.36 4 458733 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 447494 Transcript 0 32.06 9.98 2.01 5.74 8.43 7.77 2.35 3.25 2.07 5.16 0.87 1.58 6.93 8.01 13.89 0.67 2.84 0.18 0.00 0.47 5.89 35.41 14.62 6 ER1a ExonRegion 0 1.63 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 8.84 1.49 0.00 4.76 0.00 0.00 0.00 1.61 9.14 4.15 7 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.22 5.00 0.00 0.00 14.48 4.45 0.00 4.77 0.00 0.00 0.00 10.44 11.39 29.36 8 E1a_E2c KnownJunction 0 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 Ix Intron 0 3.25 1.11 1.60 2.30 1.37 1.81 0.68 1.79 0.67 1.44 1.27 0.26 1.02 12.70 10.22 0.54 2.89 0.20 0.00 0.47 8.20 6.77 7.50 10 Ix_SR2 SilentIntronRegion 0 6.44 2.11 3.06 4.52 2.58 3.27 1.26 2.99 1.27 2.84 1.43 0.53 2.07 23.06 18.75 0.88 4.66 0.41 0.00 0.63 11.18 12.21 13.51 11 E2_Aa NovelBoundary 0 19.41 8.55 1.63 6.66 4.24 7.95 1.81 2.14 4.08 4.30 0.00 0.00 0.00 14.19 14.83 0.00 3.65 0.00 0.00 2.56 5.31 22.96 8.54 12 ER2a ExonRegion 0 11.35 0.59 0.92 0.89 13.08 10.88 2.08 0.29 2.88 0.29 1.42 0.00 0.65 16.87 18.05 1.90 1.60 0.00 0.00 0.00 6.73 5.64 12.73 13 E2_Ab KnownBoundary 0 7.26 0.00 1.60 2.03 7.89 9.99 2.03 0.00 1.36 0.00 0.00 0.00 0.00 4.89 9.52 3.16 4.49 0.00 0.00 0.00 8.34 0.00 11.10 14 E2_Ac KnownBoundary 0 5.63 0.00 0.00 0.00 0.00 4.43 2.25 1.85 2.92 1.37 0.00 0.00 6.82 7.06 13.60 0.00 0.00 0.00 0.00 0.00 0.00 8.70 12.12 15 ER2b ExonRegion 0 15.52 4.07 2.45 1.36 10.70 12.84 5.30 1.73 7.41 1.15 2.58 0.00 4.69 29.23 28.05 2.97 4.40 0.00 0.00 0.00 13.22 11.81 24.47 16 ER2c ExonRegion 0 16.44 1.66 7.72 4.27 8.58 10.04 1.12 1.54 5.21 2.67 2.99 0.00 2.16 26.61 38.00 0.33 7.87 0.00 0.00 1.41 20.68 32.39 13.56 17 E2_Da NovelBoundary 0 9.85 3.35 0.00 0.00 0.00 0.00 0.00 0.00 4.51 0.00 0.00 0.00 0.00 4.24 13.47 0.00 3.83 0.00 0.00 0.00 5.31 14.21 28.00 18 E2a_E3b KnownJunction 0 18.82 0.00 8.04 0.00 7.22 6.87 0.00 0.00 0.00 0.00 2.05 0.00 0.00 23.60 13.35 3.93 0.00 0.00 0.00 0.00 7.72 7.96 4.35 19 E3_Aa NovelBoundary 0 64.09 6.18 2.90 12.82 7.39 7.33 2.08 1.93 1.42 4.24 0.00 0.00 13.64 4.71 4.45 0.00 0.00 0.00 0.00 0.00 6.24 36.99 3.33 20 ER3a ExonRegion 0 32.06 9.98 2.01 5.74 8.43 7.77 2.35 3.25 2.07 5.16 0.87 1.58 6.93 8.01 13.89 0.67 2.84 0.18 0.00 0.47 5.89 35.41 14.62 21 E3_Ab KnownBoundary 0 34.52 15.92 3.61 9.99 3.14 0.00 0.00 7.31 4.14 6.45 0.00 0.00 0.00 19.60 25.22 0.00 3.65 2.20 0.00 0.00 13.34 48.86 26.21 22 ER3b ExonRegion 0 34.01 11.20 8.10 8.13 6.59 3.48 4.08 3.76 4.42 3.80 2.10 0.00 1.13 30.25 41.43 1.62 7.29 0.62 0.00 0.69 23.78 48.40 34.68 23 E3_Da KnownBoundary 0 17.86 2.89 0.00 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.01 0.00 4.02 0.00 0.00 0.00 8.77 7.96 8.28 24 E3a_E3c KnownJunction 0 23.26 0.00 2.99 2.06 0.00 0.00 2.16 6.12 2.89 2.61 7.63 0.00 0.00 2.47 18.30 0.00 3.65 0.00 0.00 0.00 7.97 26.33 10.07 25 E3a_E3d KnownJunction 0 17.41 0.00 11.95 0.00 4.16 0.00 4.24 0.00 1.39 0.00 0.00 0.00 0.00 9.54 0.00 0.00 0.00 0.00 0.00 0.00 6.18 0.00 0.00 26 ER3c ExonRegion 0 29.02 8.81 0.65 3.00 2.84 8.66 0.89 1.06 0.92 0.02 0.78 0.00 0.00 8.23 6.92 0.00 5.04 0.95 0.00 1.38 9.98 21.27 19.74 27 E3_Ac KnownBoundary 0 17.71 2.70 0.00 3.56 12.22 0.00 0.00 1.73 1.77 0.00 2.00 0.00 0.00 7.59 8.90 0.00 0.00 0.00 0.00 2.43 5.87 13.78 8.45 28 ER3d ExonRegion 0 30.41 2.74 5.07 2.81 27.66 11.18 2.03 8.51 3.72 1.86 5.76 0.00 1.58 22.70 26.65 3.30 9.62 0.00 0.00 1.32 15.57 47.11 22.47 29 E3_Ad KnownBoundary 0 10.59 0.00 1.71 0.00 3.82 0.00 0.00 10.60 3.33 0.00 7.48 0.00 6.82 2.88 5.81 0.00 4.39 0.00 0.00 0.00 15.51 51.01 4.01 30 ER3e ExonRegion 0 11.91 2.03 6.82 5.15 4.77 0.00 1.32 8.37 1.81 2.47 6.46 0.00 1.61 20.56 25.11 0.00 7.01 0.00 0.00 0.60 19.70 62.44 10.19 31 E3_Db KnownBoundary 0 6.45 2.70 10.50 10.69 8.15 0.00 0.00 4.64 3.21 3.01 5.16 0.00 0.00 31.67 58.72 0.00 8.04 0.00 0.00 2.56 22.80 69.44 26.55 32 ER3f ExonRegion 0 23.95 2.86 7.04 3.74 1.81 3.94 1.03 3.29 2.07 1.53 1.93 0.00 2.16 21.54 37.55 1.16 2.14 0.00 0.00 2.42 12.83 25.99 9.76