Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRP11 Gene 0 46.33 90.06 46.51 59.59 44.67 73.29 54.84 31.72 92.99 60.27 0.32 3.42 1.92 0.98 2.71 1.68 6.39 17.20 38.25 36.73 48.50 172.30 101.43 2 367368 Transcript 0 0.00 5.53 0.38 3.20 2.24 1.52 1.37 1.03 12.28 3.91 0.00 0.00 0.00 0.51 0.00 0.00 0.00 6.98 3.94 7.04 13.15 2.57 5.52 3 239367 Transcript 0 23.22 67.59 37.92 54.95 28.88 58.51 41.94 32.29 102.52 66.16 0.09 1.08 1.92 2.83 4.08 1.35 10.56 46.99 52.92 54.31 120.42 167.08 154.62 4 472053 Transcript 0 0.26 0.31 0.12 0.33 0.57 0.32 0.24 0.04 0.29 0.23 0.01 0.00 0.00 0.01 0.70 0.02 0.46 1.33 0.99 0.42 1.22 0.90 1.48 5 463728 Transcript 0 3.29 1.85 0.13 0.68 1.40 2.94 4.30 1.27 8.58 5.86 0.00 0.00 0.00 0.00 0.00 0.00 2.39 1.84 3.98 5.87 54.63 66.41 73.97 6 ER1a ExonRegion 0 0.35 1.74 1.09 0.94 0.00 2.87 1.92 0.49 2.96 4.03 0.11 0.00 0.00 0.03 0.17 0.00 0.82 1.85 3.15 2.51 7.53 9.13 9.48 7 E1a_E2b KnownJunction 0 3.19 11.31 17.86 12.95 3.40 21.64 16.16 9.12 30.76 32.99 2.53 0.00 0.00 2.47 0.00 3.50 0.00 27.48 32.00 24.35 90.87 39.07 89.72 8 I1_AR1 ActiveIntronRegion 0 6.20 11.08 11.31 15.77 2.37 5.74 13.97 6.31 11.91 6.17 0.79 1.32 0.79 1.50 0.84 2.23 3.15 17.03 21.26 25.50 5.40 3.83 14.20 9 I1_AR2 ActiveIntronRegion 0 0.74 19.03 8.39 10.57 4.47 5.41 10.36 2.03 7.41 6.27 0.22 0.71 0.00 0.16 0.24 1.03 4.60 9.44 11.87 13.97 2.93 1.93 7.79 10 ER2a ExonRegion 0 0.00 0.25 0.48 1.32 2.27 1.28 0.32 0.16 1.01 0.80 0.06 0.00 0.00 0.05 2.64 0.09 0.20 2.07 3.96 1.68 3.34 2.34 4.45 11 E2_Ab KnownBoundary 0 3.04 0.00 0.00 1.83 4.33 4.88 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 5.07 0.00 0.00 6.80 4.80 2.49 0.00 2.76 4.35 12 ER2b ExonRegion 0 7.44 15.21 21.39 23.51 2.22 26.89 10.55 9.60 65.38 50.18 0.82 0.00 0.00 1.71 3.31 4.79 9.17 34.52 40.98 40.15 105.03 103.19 106.04 13 E2a_E4a KnownJunction 0 10.67 35.13 27.97 36.23 0.00 45.83 9.89 14.79 91.93 76.50 0.00 0.00 0.00 0.00 15.70 0.00 14.12 60.69 63.06 81.94 137.02 122.83 139.23 14 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.12 0.00 0.00 0.00 0.00 0.15 0.00 0.00 1.85 0.00 0.00 0.46 0.22 0.00 16 ER3a ExonRegion 0 1.05 1.01 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 1.42 0.00 0.00 1.09 1.03 1.45 17 ER4a ExonRegion 0 5.93 26.64 31.04 37.35 12.85 53.49 22.07 17.99 102.46 61.49 0.00 0.00 0.96 1.75 4.11 3.08 14.16 50.81 40.69 59.95 145.63 131.22 150.62 18 E4_Da NovelBoundary 0 0.00 0.00 3.49 1.40 0.00 2.33 22.17 0.00 7.55 8.30 0.00 0.00 0.00 0.00 0.00 0.00 3.83 13.80 9.60 18.86 3.03 3.12 7.68 19 E4a_E5a KnownJunction 0 0.00 5.53 0.00 1.90 3.23 0.00 0.00 0.00 18.52 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 0.00 3.26 15.01 0.00 3.50 20 E4a_E6a KnownJunction 0 3.48 12.04 28.21 41.85 19.35 44.52 29.37 24.15 71.87 60.92 0.00 0.00 6.82 2.35 9.52 3.16 17.67 72.13 48.19 64.56 124.73 182.66 195.82 21 ER5a ExonRegion 0 0.00 5.54 0.76 4.50 1.26 3.04 2.74 2.05 6.05 3.74 0.00 0.00 0.00 1.03 0.00 0.00 0.00 7.54 7.87 10.83 11.29 5.13 7.54 22 E5_Da NovelBoundary 0 2.74 10.26 6.15 17.28 0.00 0.00 1.77 1.81 14.09 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 0.00 5.62 14.15 8.14 16.56 23 I5 Intron 0 4.15 22.97 7.17 12.27 4.88 6.29 12.79 3.65 12.93 11.38 0.00 0.21 0.18 0.05 0.25 0.28 0.87 7.73 8.28 11.50 4.19 8.63 8.28 24 I5_AR2 ActiveIntronRegion 0 5.78 22.90 10.15 13.50 4.78 5.48 15.05 5.03 13.21 13.73 0.00 0.00 0.00 0.00 0.64 0.48 1.25 10.48 8.87 14.24 5.74 9.92 10.40 25 I5_SR2 SilentIntronRegion 0 4.67 37.66 4.92 16.08 4.87 3.89 15.07 2.87 19.11 12.94 0.00 1.55 0.00 0.00 0.00 0.00 0.36 5.12 8.53 18.62 2.90 8.52 4.04 26 I5_AR3 ActiveIntronRegion 0 4.17 28.33 9.13 14.95 9.85 8.92 14.10 2.71 15.48 13.48 0.00 0.00 0.00 0.00 0.00 0.39 0.00 9.78 11.30 7.27 3.77 9.31 9.26 27 I5_SR3 SilentIntronRegion 0 2.65 18.79 4.00 9.44 3.63 6.99 9.60 2.15 9.42 7.40 0.00 0.00 0.40 0.06 0.00 0.00 1.03 7.34 7.65 9.22 4.48 4.46 8.28 28 E6_Aa NovelBoundary 0 7.04 20.85 3.61 19.88 0.00 2.90 10.38 6.00 14.47 18.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.87 0.00 24.03 2.90 11.76 12.29 29 ER6a ExonRegion 0 11.93 43.53 38.76 48.32 14.19 46.60 24.89 24.91 108.75 73.87 0.00 0.00 0.48 2.36 2.42 2.55 10.22 72.65 73.26 50.98 155.31 161.72 175.57 30 E6a_E7a KnownJunction 0 6.52 65.91 32.38 52.77 25.64 36.17 23.67 42.88 92.42 67.72 0.00 0.00 0.00 6.71 0.00 0.00 12.81 38.80 23.81 53.12 214.68 152.72 176.53 31 ER7a ExonRegion 0 15.69 54.97 21.96 53.17 16.49 63.79 33.09 28.69 92.65 68.00 0.00 0.00 0.81 2.48 2.29 0.00 10.50 46.85 45.72 50.40 147.78 155.57 172.99 32 E7_Ab KnownBoundary 0 52.75 128.66 35.84 53.44 32.77 131.52 57.06 22.59 151.94 110.30 0.00 6.00 6.82 5.47 0.00 0.00 4.39 89.62 102.03 60.59 193.98 237.65 223.40 33 ER7b ExonRegion 0 27.14 80.02 27.69 47.63 41.12 109.03 66.48 24.46 113.25 70.26 0.00 0.00 2.76 4.12 0.81 0.00 10.68 37.91 71.56 50.04 139.72 181.49 186.50 34 E7a_E8a KnownJunction 0 28.45 77.62 23.59 67.22 54.58 100.34 74.37 17.17 92.97 64.93 0.00 0.00 0.00 2.47 11.13 0.00 8.51 27.94 47.15 45.70 100.94 128.71 182.51 35 E7a_E9a NovelJunction 0 0.00 3.35 1.66 0.00 0.00 11.53 2.25 0.00 3.56 4.94 0.00 0.00 0.00 2.88 0.00 0.00 0.00 4.02 8.28 0.00 3.15 7.96 23.82 36 ER8a ExonRegion 0 19.25 66.07 21.15 40.53 42.92 96.10 68.71 20.49 96.26 60.52 0.00 2.30 0.00 3.18 5.05 1.58 15.51 24.58 56.94 43.11 99.26 179.36 196.63 37 E8_Da KnownBoundary 0 5.85 2.63 1.39 0.00 4.33 0.00 5.70 2.55 5.84 8.81 0.00 0.00 0.00 0.00 0.00 0.00 3.74 0.00 8.94 6.33 75.43 137.84 94.58 38 E8a_E9a KnownJunction 0 17.71 72.95 27.11 34.46 18.93 43.44 48.93 19.88 108.07 36.21 0.00 0.00 0.00 2.24 6.30 0.00 4.77 36.98 75.20 56.63 44.60 81.93 81.69 39 ER8b ExonRegion 0 3.29 1.85 0.13 0.68 1.40 2.94 4.30 1.27 8.58 5.86 0.00 0.00 0.00 0.00 0.00 0.00 2.39 1.84 3.98 5.87 54.63 66.41 73.97 40 E8_Db NovelBoundary 0 0.00 2.96 1.66 2.06 0.00 0.00 4.42 3.98 8.10 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 26.64 2.68 96.68 101.71 105.08 41 I8 Intron 0 7.04 6.07 3.27 4.67 6.07 6.00 7.67 3.73 9.91 5.42 0.00 0.86 0.62 0.26 0.29 0.76 1.18 3.57 3.15 5.73 41.24 116.70 92.16 42 I8_SR1 SilentIntronRegion 0 1.10 0.00 0.00 1.06 0.00 0.00 3.44 0.00 0.96 1.77 0.00 0.00 0.00 0.00 1.07 0.00 0.00 2.87 0.00 7.75 28.67 44.43 36.65 43 I8_AR2 ActiveIntronRegion 0 2.32 3.09 2.78 3.09 7.46 4.49 6.93 4.78 6.37 2.16 0.00 1.81 0.33 0.00 0.00 0.25 0.84 1.09 1.88 4.67 22.32 103.62 63.48 44 I8_SR2 SilentIntronRegion 0 4.16 4.06 5.56 5.45 5.13 4.85 7.56 2.85 11.47 5.59 0.00 2.53 0.85 1.27 0.00 0.00 1.64 3.49 0.00 2.82 23.96 133.15 77.61 45 I8_AR3 ActiveIntronRegion 0 10.71 10.14 2.83 4.98 3.19 7.92 9.63 1.73 9.13 8.38 0.00 0.00 0.00 0.44 0.62 0.00 1.54 6.60 5.57 6.01 66.25 124.83 102.91 46 I8_SR3 SilentIntronRegion 0 9.68 7.04 3.18 2.87 5.51 6.30 6.36 1.23 16.15 7.55 0.00 0.00 1.18 0.00 0.00 0.00 3.85 3.14 2.00 7.91 68.94 133.92 111.45 47 I8_AR4 ActiveIntronRegion 0 10.96 6.77 3.59 4.84 5.35 7.00 8.46 2.94 15.94 7.29 0.00 0.31 1.84 0.35 0.72 1.57 1.41 8.35 6.29 7.91 81.54 161.87 156.71 48 I8_SR4 SilentIntronRegion 0 4.79 6.28 3.31 4.30 7.64 6.03 8.01 5.00 6.57 2.50 0.00 1.46 0.00 0.00 0.00 0.72 0.00 0.81 2.90 5.65 14.01 98.37 60.16 49 I8_AR5 ActiveIntronRegion 0 9.47 8.19 3.78 7.77 7.96 7.67 8.20 6.08 10.43 7.74 0.00 0.38 0.36 0.25 0.22 1.74 1.23 1.96 2.26 5.22 26.50 102.30 89.10 50 I8_AR6 ActiveIntronRegion 0 1.61 1.55 0.00 0.00 4.07 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 1.62 15.03 31.69 22.35 51 E9_Aa NovelBoundary 0 3.41 5.79 8.40 1.63 15.62 8.12 20.23 4.85 10.73 6.82 0.00 0.00 0.00 0.00 0.00 0.00 4.77 6.84 8.75 5.05 48.93 49.91 60.69 52 ER9a ExonRegion 0 84.02 156.13 79.13 99.12 78.70 116.54 91.68 53.25 141.34 90.26 0.52 6.50 3.40 0.86 3.98 2.38 7.37 14.56 51.36 50.17 35.42 267.91 125.10 53 IG24_AR1 ActiveIntergenicRegion 0 2.72 11.33 7.35 3.89 14.14 5.50 4.35 6.91 12.35 12.62 0.00 8.66 0.00 0.00 5.80 0.00 11.79 3.70 0.00 17.63 0.00 0.00 2.94