Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NUP43 Gene 0 17.56 29.63 16.23 21.45 30.55 32.72 41.49 9.86 15.95 29.99 51.90 46.71 27.97 57.45 36.70 55.92 54.98 23.20 27.79 35.64 24.89 16.50 19.99 2 463048 Transcript 0 0.00 0.16 1.59 0.48 0.85 0.87 0.10 1.02 0.73 0.81 0.01 0.00 0.00 0.32 0.00 0.47 0.00 0.22 0.25 1.52 0.52 0.66 0.70 3 367402 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 367403 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 460354 Transcript 0 5.31 6.86 7.84 5.36 5.69 1.83 9.18 3.61 1.24 3.51 2.05 1.35 0.00 0.71 2.54 0.00 2.27 0.00 0.00 3.59 0.28 3.48 3.49 6 340413 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 367404 Transcript 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.54 5.37 0.00 0.00 2.47 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 8 403890 Transcript 0 2.96 0.00 1.63 1.73 8.32 2.90 15.63 0.00 1.79 3.44 7.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.32 3.18 0.97 1.70 1.75 0.21 2.04 1.46 1.62 0.02 0.00 0.00 0.64 0.00 0.94 0.00 0.44 0.50 3.03 1.05 1.32 1.40 10 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.03 0.21 0.00 0.08 0.00 0.17 0.08 0.00 0.13 0.00 0.02 0.00 0.00 0.00 0.05 0.00 0.05 0.01 0.05 0.89 0.03 0.00 1.23 12 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2b ExonRegion 0 52.13 70.46 12.62 13.83 48.06 77.29 62.50 2.78 12.99 15.91 40.02 0.00 0.00 37.05 25.63 48.93 45.23 27.61 21.71 23.25 35.14 15.70 26.05 14 E2_Ac KnownBoundary 0 188.33 231.41 29.21 38.62 194.65 198.12 155.19 7.68 34.55 48.14 125.24 0.00 0.00 114.31 79.49 189.18 142.40 68.11 40.94 70.05 102.92 38.76 73.16 15 ER2c ExonRegion 0 125.20 182.09 43.42 66.86 189.19 248.13 318.90 25.16 58.53 122.39 183.47 27.50 25.03 134.28 71.60 247.73 201.41 72.80 108.04 105.16 105.15 48.52 86.82 16 E2a_E3a KnownJunction 0 24.45 26.51 37.11 47.85 32.51 13.34 19.70 14.46 46.01 80.77 189.73 25.66 60.06 48.68 38.69 28.03 191.49 15.50 33.22 59.44 111.76 20.33 7.43 17 ER3a ExonRegion 0 14.92 22.60 65.68 111.52 43.75 51.29 45.08 43.20 75.93 172.74 283.16 100.49 82.13 252.94 145.82 355.37 289.32 112.31 158.34 187.48 114.49 92.93 112.50 18 E3_Da NovelBoundary 0 10.96 2.96 1.77 10.79 10.27 2.16 4.24 4.60 3.59 2.90 0.00 12.60 0.00 0.00 4.45 0.00 4.21 1.53 4.71 0.00 0.00 0.00 0.00 19 E3a_E4a KnownJunction 0 34.60 56.90 56.50 95.69 146.01 109.48 74.28 29.94 69.96 137.51 206.47 177.66 145.77 178.41 80.97 312.65 197.38 128.42 107.39 148.80 92.23 52.54 112.68 20 ER4a ExonRegion 0 30.64 96.02 74.07 86.42 245.28 239.08 288.35 35.88 57.13 118.69 217.01 172.01 81.53 189.98 91.05 176.08 209.14 98.22 83.72 132.73 98.97 48.48 58.32 21 E4a_E5a KnownJunction 0 75.27 264.23 101.47 112.21 297.11 413.28 633.73 70.57 80.73 135.44 288.13 114.79 63.96 242.28 137.96 232.59 228.70 81.50 125.74 185.68 116.14 70.48 66.92 22 E4a_E6a KnownJunction 0 2.96 0.00 1.63 1.73 8.32 2.90 15.63 0.00 1.79 3.44 7.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E5_Aa NovelBoundary 0 10.22 18.48 9.43 10.85 0.00 0.00 12.06 2.55 1.19 5.75 0.00 0.00 13.64 0.00 0.00 4.36 7.67 0.00 0.00 3.20 0.00 0.00 0.00 24 ER5a ExonRegion 0 121.19 190.99 79.13 93.43 92.88 147.21 207.51 46.66 66.24 129.07 252.47 227.55 110.72 233.83 139.69 204.35 251.74 92.10 107.95 166.46 103.16 78.39 65.30 25 E5a_E6a KnownJunction 0 107.20 82.81 84.44 109.88 147.96 110.11 201.74 54.01 72.74 133.18 228.74 160.70 202.26 233.86 182.21 262.15 222.16 101.19 81.32 161.84 75.24 68.03 84.00 26 E5a_E7a KnownJunction 0 15.11 0.00 1.83 0.00 3.99 0.00 3.80 0.00 3.59 1.29 4.74 0.00 13.64 7.12 4.45 25.72 0.00 4.10 4.42 0.00 2.59 0.00 0.00 27 E5a_E8a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.54 5.37 0.00 0.00 2.47 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 28 ER6a ExonRegion 0 58.16 87.88 81.72 107.52 134.95 104.43 145.04 59.09 77.89 124.00 225.77 311.98 180.43 274.97 155.79 249.44 247.91 103.11 116.90 168.01 80.26 76.57 83.91 29 E6a_E7a KnownJunction 0 65.20 146.49 113.57 106.05 120.20 89.72 142.16 53.19 76.82 128.37 179.41 353.22 135.71 304.20 168.37 235.15 342.31 120.17 166.31 240.46 75.49 113.77 72.47 30 ER7a ExonRegion 0 52.25 94.06 70.82 91.27 101.61 87.57 114.11 41.08 75.41 110.55 189.90 231.33 127.24 257.87 143.00 221.79 235.15 100.18 96.59 145.85 111.88 53.86 63.96 31 E7_Da NovelBoundary 0 8.22 34.20 35.39 58.63 28.18 30.44 43.10 23.45 39.96 52.33 66.33 62.57 5.68 47.15 27.07 59.90 64.05 52.15 36.71 44.36 36.45 13.59 25.95 32 E7b_E8a KnownJunction 0 119.13 186.94 71.26 97.82 209.25 157.30 248.86 46.78 78.44 110.03 281.76 351.41 242.35 445.47 234.13 302.74 327.54 125.81 218.17 211.31 157.90 114.14 148.79 33 ER7b ExonRegion 0 74.78 133.20 61.68 85.18 153.86 118.28 180.50 43.79 73.08 104.75 255.14 309.56 204.02 371.11 177.46 252.63 287.18 119.18 174.13 165.60 138.83 91.33 114.53 34 I7 Intron 0 7.71 4.57 8.09 16.89 7.79 3.90 12.30 5.00 4.47 8.82 2.00 3.90 6.60 1.21 5.03 7.76 5.81 3.18 5.61 7.49 1.20 2.65 4.10 35 I7_SR1 SilentIntronRegion 0 7.72 4.57 8.10 16.91 7.79 3.90 12.31 5.01 4.48 8.83 2.00 3.90 6.61 1.21 5.03 7.77 5.82 3.18 5.62 7.50 1.20 2.65 4.11 36 E8_Aa NovelBoundary 0 11.11 9.80 32.17 29.73 8.66 18.34 27.43 6.45 15.86 16.25 2.00 6.30 6.82 6.89 21.01 15.72 44.13 10.99 19.01 12.08 12.60 2.33 4.35 37 ER8a ExonRegion 0 54.89 102.03 56.89 80.40 135.01 112.34 136.71 32.84 58.38 101.99 214.30 263.85 148.10 279.89 142.66 231.80 218.40 106.96 145.65 140.06 106.87 56.10 92.44 38 E8_Da NovelBoundary 0 3.11 11.91 7.57 11.82 23.51 19.99 54.01 2.55 11.26 13.38 30.06 38.26 6.82 53.92 29.92 67.85 79.57 24.91 40.57 17.71 8.83 11.02 24.24 39 E8a_E9a KnownJunction 0 19.04 84.52 26.02 43.22 103.14 62.18 70.48 23.95 47.83 72.34 175.94 143.15 126.62 219.73 132.39 142.36 131.56 55.71 49.60 87.95 110.33 65.03 42.00 40 I8 Intron 0 29.19 18.34 20.55 32.94 50.19 24.11 48.56 11.42 19.74 19.43 35.37 61.57 72.07 40.39 30.33 43.69 42.15 8.22 12.19 24.43 6.85 11.21 13.57 41 I8_SR1 SilentIntronRegion 0 20.96 17.94 15.11 23.54 41.76 22.44 36.48 10.39 17.12 12.51 24.54 32.59 41.74 41.78 32.79 45.84 35.84 7.61 11.39 21.37 7.92 10.78 13.46 42 I8_AR2 ActiveIntronRegion 0 23.71 13.82 22.04 35.85 36.31 14.28 23.33 17.48 21.56 21.49 35.97 47.24 34.08 39.43 36.65 40.48 33.18 10.45 13.75 24.37 13.47 4.91 15.76 43 I8_AR3 ActiveIntronRegion 0 39.51 20.68 26.84 43.57 63.35 28.69 66.26 12.48 23.40 26.88 47.75 94.10 109.53 42.42 29.71 45.56 52.18 9.13 13.66 29.07 5.60 13.24 14.46 44 E9_Aa NovelBoundary 0 63.64 67.75 44.47 53.97 100.76 47.30 96.14 35.04 34.78 35.70 36.80 107.28 117.85 112.49 46.48 73.91 48.25 2.11 17.98 20.26 12.73 16.96 31.67 45 ER9a ExonRegion 0 4.45 9.07 2.50 3.51 5.97 7.19 7.56 2.11 2.70 6.47 8.49 9.24 7.18 15.77 15.30 9.01 8.23 5.13 5.94 6.59 5.63 4.27 4.85 46 E9_Da KnownBoundary 0 37.71 40.39 34.59 26.77 42.61 19.42 28.22 11.62 4.60 14.32 7.37 11.70 12.34 15.95 11.25 16.41 10.94 3.73 19.58 18.79 7.10 9.55 6.49 47 ER9b ExonRegion 0 2.12 2.96 2.45 6.28 2.68 0.00 0.00 0.00 0.00 5.73 0.00 0.00 1.14 1.97 0.62 0.00 3.30 0.00 0.00 1.35 0.00 3.41 0.00 48 E9_Db KnownBoundary 1 68.31 13.22 155.88 145.17 34.72 41.00 49.02 163.31 132.67 97.67 20.11 5.85 29.22 4.53 34.61 106.04 73.02 179.91 46.12 12.66 29.78 11.39 56.60 49 E9b_E9b KnownJunction 0 3.48 3.29 12.15 7.66 0.00 0.00 0.00 7.23 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 0.00 3.06 0.00 50 ER9c ExonRegion 0 0.87 1.20 0.22 0.13 1.57 0.32 1.10 0.00 0.00 0.11 0.46 4.56 7.14 3.13 11.98 2.09 1.56 0.36 1.13 0.88 1.16 0.74 1.73 51 E9_Ab KnownBoundary 1 462.97 502.54 1071.43 1219.72 416.89 257.92 530.00 1394.01 1189.25 1092.80 215.84 135.19 182.46 57.80 187.65 454.15 355.77 1742.16 326.79 477.21 301.84 244.87 563.74 52 ER9d ExonRegion 0 1.43 4.46 4.12 3.69 5.48 1.96 8.14 0.72 2.52 5.35 2.34 3.43 1.20 1.23 4.64 0.83 1.82 0.16 0.00 2.16 0.60 2.72 2.70 53 ER9e ExonRegion 0 7.14 10.42 3.52 3.07 11.37 3.67 18.37 0.00 2.47 0.57 4.11 2.71 0.00 1.42 5.08 0.00 4.54 0.00 0.00 3.99 0.55 3.91 6.97