Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MYB Gene 0 21.30 26.26 14.58 6.43 25.66 14.43 27.39 10.05 3.33 10.97 182.09 138.07 118.12 49.39 19.41 176.48 114.83 8.73 2.81 16.26 1.23 1.69 1.26 2 237302 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 6.30 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 316528 Transcript 0 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 2.47 0.00 0.00 4.77 0.00 0.00 0.00 2.53 0.00 0.00 4 463282 Transcript 0 1.94 0.00 0.00 1.06 0.00 0.00 0.98 1.43 0.00 0.00 4.84 3.48 1.84 1.08 0.97 9.50 1.10 0.62 0.00 0.00 0.00 0.00 0.00 5 367812 Transcript 0 0.00 1.36 0.00 0.00 0.00 0.31 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.54 1.93 0.00 1.10 0.00 1.06 0.00 0.00 0.00 0.98 6 339290 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 442647 Transcript 0 16.52 2.96 1.18 0.00 0.00 0.00 5.03 0.00 0.00 1.29 68.75 18.01 28.08 22.13 0.00 100.14 36.28 1.87 0.00 0.00 0.00 0.00 0.00 8 341911 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 367814 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 420123 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 430686 Transcript 0 1.43 2.88 1.44 1.39 1.15 4.52 7.99 1.16 0.84 1.00 35.94 11.16 12.56 10.80 1.91 34.56 27.28 1.44 1.06 3.95 0.00 0.58 0.00 12 438901 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 ER1a ExonRegion 0 0.00 1.13 1.08 0.02 0.74 1.83 1.18 0.00 0.00 0.79 25.92 1.64 2.70 3.90 1.44 39.90 29.31 1.00 0.00 1.63 0.51 0.00 0.00 14 E1a_E2a KnownJunction 0 0.00 3.35 1.77 3.23 0.00 2.73 5.87 0.00 0.00 0.00 56.59 0.00 0.00 11.36 8.90 91.69 63.86 12.15 0.00 2.94 0.00 0.00 0.00 15 E2_Ab NovelBoundary 1 9.56 17.17 0.00 3.86 11.97 16.98 15.50 3.94 0.00 1.13 135.40 23.11 13.15 18.07 17.80 168.59 77.61 11.69 0.00 8.69 2.78 0.00 0.00 16 ER2a ExonRegion 1 2.49 7.92 1.93 2.58 8.41 6.55 8.46 2.22 0.00 0.49 87.74 11.44 5.86 13.81 13.57 129.50 72.50 8.38 0.00 5.47 1.18 0.00 0.00 17 ER2b ExonRegion 1 2.94 8.43 4.26 1.92 10.91 8.39 20.18 3.38 1.52 4.97 144.04 60.37 17.77 31.74 16.02 175.65 96.46 7.31 1.31 10.92 0.88 0.65 0.00 18 E2a_E3b KnownJunction 1 6.30 14.34 7.07 3.10 3.40 2.33 51.01 4.81 3.04 2.66 143.77 29.11 32.95 59.45 0.00 165.60 110.24 9.00 4.71 2.62 0.00 3.12 0.00 19 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 6.42 6.30 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 1 1.41 3.39 2.04 0.91 0.89 4.89 11.92 1.15 0.41 0.76 61.21 11.55 18.76 19.49 2.90 56.47 41.81 2.46 2.12 2.84 0.00 0.69 0.00 21 ER3b ExonRegion 0 7.75 8.56 7.51 5.09 9.04 19.16 22.62 5.99 2.30 6.43 238.40 101.16 68.37 47.53 12.71 188.08 163.56 6.61 2.92 11.96 1.58 4.55 0.00 22 E3a_E4a KnownJunction 0 16.60 15.85 5.20 8.99 24.11 8.29 22.17 8.13 3.50 10.93 259.49 195.51 86.20 43.15 13.35 247.03 187.19 9.00 0.00 14.64 0.00 5.02 0.00 23 ER4a ExonRegion 0 13.31 18.43 10.54 4.95 18.13 6.53 11.05 2.94 2.68 15.43 278.73 163.82 79.23 67.44 26.27 219.23 172.82 8.40 3.12 21.99 0.95 0.76 0.00 24 E4a_E5a KnownJunction 0 19.04 28.61 15.67 3.66 11.63 21.01 15.68 7.48 5.73 15.31 310.45 172.26 89.77 107.48 32.14 270.44 240.49 14.67 3.76 23.01 2.59 2.45 0.00 25 ER5a ExonRegion 0 16.57 21.56 13.98 1.86 17.86 15.21 27.21 11.46 1.33 14.28 338.44 222.59 146.69 93.60 22.66 340.21 227.79 13.15 5.87 20.17 0.13 2.91 0.00 26 E5a_E6a KnownJunction 1 32.45 31.44 21.70 7.16 30.31 2.90 30.65 5.87 0.00 13.89 339.14 227.17 166.71 81.17 4.45 364.52 234.13 13.89 3.86 11.76 0.00 2.94 0.00 27 I5_AR3 ActiveIntronRegion 0 10.58 2.03 3.68 4.09 10.70 3.67 3.97 3.46 0.00 1.15 1.93 6.18 14.07 1.86 0.41 11.89 7.54 0.00 0.00 4.26 0.00 0.00 0.00 28 ER6a ExonRegion 0 19.82 28.42 14.56 6.18 11.89 16.60 31.50 8.63 1.84 17.09 352.93 237.72 207.14 88.69 20.28 349.23 229.94 23.82 2.21 28.62 4.53 2.11 0.00 29 E6a_E7a KnownJunction 0 20.15 23.88 13.13 14.08 16.04 40.37 38.24 14.01 5.90 17.68 419.26 226.72 371.57 120.73 25.84 508.41 238.62 40.25 0.00 48.90 3.15 0.00 0.00 30 ER7a ExonRegion 0 22.99 16.62 13.57 5.42 7.60 22.84 23.24 10.97 5.96 21.01 410.94 224.06 267.85 108.58 37.36 402.56 293.13 27.83 0.00 27.53 4.38 0.72 0.00 31 E7a_E8a KnownJunction 1 14.30 28.02 14.78 5.06 20.63 25.78 40.23 7.76 1.74 18.35 395.78 180.81 278.07 97.53 14.83 307.44 291.54 22.47 3.48 14.38 4.94 3.12 0.00 32 ER8a ExonRegion 0 23.73 40.67 12.28 8.21 26.25 24.76 34.60 13.69 3.80 17.55 433.23 216.91 289.27 103.62 24.73 365.14 254.98 19.69 0.00 25.18 0.44 1.71 0.00 33 E8_Da KnownBoundary 0 26.89 16.18 13.54 8.42 16.98 24.19 31.40 9.20 2.72 16.44 146.35 54.77 113.63 44.32 0.00 143.55 88.27 5.18 0.00 2.68 0.00 0.00 0.00 34 E8_Db KnownBoundary 0 0.00 6.71 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E8b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E8b_E10a KnownJunction 0 16.52 2.96 1.18 0.00 0.00 0.00 5.03 0.00 0.00 1.29 68.75 18.01 28.08 22.13 0.00 100.14 36.28 1.87 0.00 0.00 0.00 0.00 0.00 37 E8_Dc KnownBoundary 0 0.00 0.00 1.24 1.86 0.00 0.00 7.46 0.00 0.00 1.42 2.68 13.80 0.00 2.47 0.00 8.72 13.46 0.00 0.00 0.00 0.00 0.00 0.00 38 E8c_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 6.30 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E8c_E10a KnownJunction 0 35.93 45.72 16.62 3.26 25.89 36.51 64.26 11.58 2.60 15.39 327.98 186.66 231.97 121.02 28.93 349.91 230.39 10.74 0.00 18.66 2.53 0.00 0.00 40 ER8b ExonRegion 1 33.86 41.69 17.36 9.77 31.22 37.29 59.36 14.98 2.47 22.56 386.26 194.10 283.75 144.01 24.66 415.11 248.67 10.78 0.00 21.28 0.00 0.00 0.00 41 ER8c ExonRegion 0 22.34 43.83 17.16 8.63 24.38 32.40 53.84 12.29 2.47 20.90 312.27 194.83 268.37 109.00 24.50 338.82 206.86 12.52 0.00 20.80 0.00 0.00 0.00 42 ER8d ExonRegion 0 1.44 2.37 0.84 1.87 1.42 4.16 4.06 1.17 1.26 1.24 10.68 10.78 6.36 2.11 0.93 12.65 12.75 0.42 0.00 5.07 0.00 0.47 0.00 43 E9_Aa NovelBoundary 1 10.37 2.76 7.07 0.00 3.65 2.84 3.62 1.81 0.00 1.58 7.21 31.06 72.72 2.47 0.00 3.59 11.41 2.32 0.00 0.00 0.00 0.00 0.00 44 ER9a ExonRegion 0 1.33 0.00 0.00 0.10 1.30 1.78 4.80 0.41 0.00 0.83 6.06 22.27 22.24 4.62 0.39 24.97 5.82 0.02 0.00 2.07 0.00 0.00 0.00 45 E9_Db NovelBoundary 0 0.00 6.71 1.48 4.13 0.00 18.63 6.58 1.93 0.00 0.00 0.00 38.86 13.64 4.47 0.00 0.00 9.35 0.00 0.00 6.14 0.00 0.00 0.00 46 E9b_E10a KnownJunction 0 3.70 0.00 0.00 1.83 0.00 0.00 0.00 2.55 0.00 0.00 7.05 0.00 0.00 0.00 0.00 10.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER9b ExonRegion 0 2.12 0.00 0.00 1.36 0.00 0.00 0.86 1.73 0.00 0.00 4.89 10.44 5.52 3.25 2.90 17.66 3.30 1.85 0.00 0.00 0.00 0.00 0.00 48 ER10a ExonRegion 0 15.17 42.71 17.02 3.78 17.54 17.83 27.04 8.45 4.34 15.85 327.17 231.74 271.76 100.15 26.27 346.15 218.66 16.84 0.64 25.55 0.00 2.48 0.59 49 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 6.81 0.00 0.00 0.00 0.00 7.42 5.55 6.82 4.59 0.00 39.39 13.84 0.00 0.00 0.00 0.00 0.00 0.00 50 E10a_E12a KnownJunction 0 36.45 62.75 40.21 8.39 32.43 7.55 26.01 16.84 8.94 23.40 259.54 212.32 268.33 51.80 16.81 156.71 232.54 7.83 0.00 8.88 0.00 0.00 0.00 51 ER11a ExonRegion 0 1.49 2.31 1.28 0.00 1.87 1.15 3.30 1.81 1.10 0.71 24.15 10.84 7.47 4.72 0.00 19.67 15.32 1.55 0.00 2.39 0.00 0.00 0.00 52 E11a_E12a KnownJunction 0 0.00 5.99 0.00 0.00 0.00 0.00 2.12 0.00 1.42 0.00 4.47 5.70 6.17 6.71 0.00 21.36 12.44 0.00 0.00 0.00 0.00 0.00 0.00 53 ER12a ExonRegion 0 37.85 54.68 32.94 11.44 39.57 33.33 45.14 14.64 7.28 19.79 401.99 298.55 314.66 99.40 24.55 360.52 271.41 13.86 5.10 32.06 0.00 3.54 1.68 54 E12a_E13a KnownJunction 0 58.75 92.15 25.75 7.46 68.76 40.09 78.87 23.78 2.84 17.03 378.15 355.17 465.72 73.46 51.67 309.66 231.51 1.74 4.80 23.01 0.00 2.57 4.35 55 E13_Aa NovelBoundary 0 6.67 0.00 0.00 0.00 3.65 2.10 16.74 0.00 1.79 2.74 4.90 18.16 13.64 2.35 0.00 15.89 8.60 0.00 0.00 9.20 0.00 0.00 0.00 56 ER13a ExonRegion 0 28.31 82.42 15.60 8.28 46.46 10.70 49.82 11.00 2.14 13.26 296.76 245.76 339.40 73.41 20.89 224.18 177.24 7.26 0.72 18.50 0.00 2.12 0.51 57 E13a_E14a KnownJunction 0 20.30 97.29 17.83 8.39 37.69 24.53 46.24 7.27 1.79 10.74 288.34 158.45 266.05 64.81 16.44 239.60 194.30 6.22 0.00 19.69 0.00 0.00 0.00 58 ER14a ExonRegion 0 19.37 56.94 20.65 11.61 29.33 22.56 33.58 8.79 4.78 11.25 328.38 225.89 273.96 84.61 26.80 306.15 195.36 11.31 7.56 21.77 0.89 1.49 3.52 59 E14_Da NovelBoundary 0 12.30 6.58 4.91 2.06 4.16 5.79 11.88 4.76 1.79 3.06 6.74 6.15 13.64 0.00 4.45 54.60 15.71 2.49 0.00 0.00 0.00 0.00 0.00 60 E14a_E15a KnownJunction 0 24.60 24.80 17.98 15.68 23.51 22.77 45.93 10.88 2.86 9.51 339.98 189.21 262.65 88.88 28.18 491.75 241.51 14.34 3.58 19.24 0.00 2.63 0.00 61 ER15a ExonRegion 0 19.60 37.36 27.68 9.74 29.17 24.07 41.46 8.78 3.07 10.84 316.77 180.51 259.35 77.53 24.02 311.78 200.28 13.72 3.76 29.61 1.57 0.98 0.90 62 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.85 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E15a_E18a KnownJunction 0 35.71 62.82 20.05 6.89 76.57 16.47 54.67 6.20 6.54 11.34 250.75 239.03 278.88 74.52 37.33 384.09 164.84 15.01 4.80 24.35 3.15 2.57 4.27 64 E16_Aa NovelBoundary 1 349.99 361.98 395.37 423.62 303.91 209.37 362.09 401.38 360.62 319.95 190.63 82.83 116.88 77.05 183.94 383.57 253.39 505.52 276.34 321.06 150.37 134.41 317.81 65 ER16a ExonRegion 1 13.86 19.72 7.64 10.93 15.39 10.52 14.25 13.34 15.40 16.02 8.06 15.42 24.49 12.69 24.41 25.41 20.58 21.04 19.61 27.01 10.00 4.96 16.93 66 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E16a_E18a KnownJunction 0 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 2.47 0.00 0.00 4.77 0.00 0.00 0.00 2.53 0.00 0.00 68 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER17a ExonRegion 0 0.00 4.07 0.00 0.00 0.00 0.92 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.62 5.80 0.00 3.30 0.00 3.19 0.00 0.00 0.00 2.94 70 ER18a ExonRegion 0 37.63 59.03 20.89 7.75 43.16 19.00 46.02 8.16 4.68 12.01 297.52 207.69 158.42 92.36 39.19 385.63 200.65 15.77 7.02 26.36 1.67 0.27 0.54 71 E18a_E19a KnownJunction 0 27.56 60.25 17.98 3.36 11.97 5.11 41.03 8.46 0.00 13.03 172.31 181.11 175.15 67.46 41.91 232.33 118.65 6.88 0.00 19.62 0.00 0.00 0.00 72 I18_AR1 ActiveIntronRegion 0 5.39 3.33 2.27 1.07 3.32 0.00 4.64 0.00 1.98 1.11 12.66 25.35 26.50 6.16 1.96 24.84 21.32 0.60 0.00 5.17 0.00 0.00 0.00 73 I18_AR3 ActiveIntronRegion 0 13.59 3.87 3.16 2.57 7.00 0.00 14.51 2.29 2.47 3.02 14.53 23.73 34.27 0.50 0.00 16.98 21.90 0.00 0.00 4.30 0.00 0.00 0.00 74 I18_SR5 SilentIntronRegion 0 14.41 5.87 1.31 1.83 7.13 2.79 9.06 1.76 0.79 1.31 9.97 1.27 3.36 1.57 0.29 13.78 9.85 3.45 0.00 2.05 0.00 0.00 0.00 75 I18_AR6 ActiveIntronRegion 0 14.13 5.95 3.87 0.90 4.69 2.09 9.17 1.45 1.98 1.79 5.55 1.16 0.00 1.34 2.35 9.75 9.00 1.38 0.00 4.15 0.00 0.00 0.00 76 E19_Aa NovelBoundary 0 24.23 6.45 7.36 0.00 0.00 9.48 9.54 1.93 1.59 3.25 4.79 0.00 6.82 2.24 0.00 19.91 8.60 1.82 0.00 0.00 0.00 0.00 0.00 77 ER19a ExonRegion 0 38.42 31.30 23.74 10.44 50.06 19.03 42.59 17.22 2.92 13.33 145.12 164.21 89.59 41.83 25.79 129.24 73.08 3.66 1.20 14.17 0.27 1.74 0.00 78 E19_Da KnownBoundary 1 36.15 8.88 15.52 6.76 40.75 2.61 14.31 5.42 0.00 6.98 56.33 112.54 54.05 31.37 38.45 57.51 72.93 2.45 0.00 8.37 0.00 0.00 0.00 79 ER19b ExonRegion 0 42.79 15.36 10.83 4.29 32.69 12.14 22.43 14.05 1.08 4.28 69.63 35.88 29.97 21.06 15.37 93.09 63.63 0.00 0.00 8.41 0.00 2.44 0.00 80 ER19c ExonRegion 0 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00