Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EPM2A Gene 0 17.04 23.44 8.71 16.07 27.53 21.58 7.22 20.39 24.04 19.79 30.74 13.05 15.76 21.98 21.32 23.37 23.62 8.96 12.87 16.13 3.49 6.29 5.47 2 367519 Transcript 0 1.22 3.48 3.12 3.55 8.57 6.96 0.82 4.75 5.43 4.33 3.90 8.00 0.00 2.13 3.49 4.52 0.64 1.66 4.54 6.21 0.33 0.31 0.79 3 392304 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 324857 Transcript 0 0.03 0.00 0.00 0.04 0.00 0.26 0.02 0.38 0.18 0.24 0.18 0.00 0.06 0.25 0.19 0.35 0.34 0.26 0.41 0.38 0.11 0.14 0.00 5 435470 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 461700 Transcript 0 0.19 0.06 0.00 0.18 0.39 0.00 0.23 0.37 0.11 0.00 0.06 0.00 0.83 0.11 0.30 1.00 0.48 0.00 0.00 0.06 0.00 0.00 0.09 7 496228 Transcript 0 0.81 0.00 0.82 0.37 0.43 0.11 0.48 1.29 1.78 0.15 9.86 5.02 3.18 11.79 7.43 11.99 2.05 1.63 1.56 4.73 1.21 0.62 1.25 8 450221 Transcript 0 0.20 0.10 0.18 0.39 0.26 0.00 0.00 0.00 0.62 0.25 0.19 0.00 0.00 0.19 0.28 0.00 0.16 0.13 4.20 0.31 0.00 0.00 0.00 9 489412 Transcript 0 1.01 0.00 0.00 1.33 0.83 0.21 0.66 0.41 0.00 0.25 1.56 2.27 0.00 1.60 0.38 1.67 1.04 0.00 0.00 0.68 0.00 0.00 0.72 10 IG40_SR5 SilentIntergenicRegion 0 0.48 32.41 0.42 25.64 14.63 88.02 9.19 12.32 34.98 15.18 6.60 17.14 13.98 4.93 1.83 9.12 6.38 8.48 5.44 18.41 3.26 11.86 4.99 11 IG40_AR4 ActiveIntergenicRegion 0 3.20 63.77 1.76 39.31 34.86 110.26 14.34 22.86 43.25 19.09 5.76 19.35 13.65 7.33 1.02 5.58 3.50 6.11 6.52 16.84 2.01 10.21 3.90 12 IG40_SR4 SilentIntergenicRegion 0 6.71 120.23 11.25 60.08 40.66 141.08 15.81 33.07 54.63 29.92 5.92 16.98 8.59 6.33 2.51 4.79 2.76 4.20 6.26 17.23 0.88 15.45 6.94 13 IG40_AR3 ActiveIntergenicRegion 0 10.01 164.22 12.33 69.93 51.85 145.49 16.60 40.95 54.78 34.72 3.20 16.97 14.15 4.77 7.40 2.79 2.15 3.46 4.50 12.71 0.64 14.27 4.59 14 ER1a ExonRegion 0 0.63 5.22 6.23 7.10 9.49 8.67 1.45 9.50 8.40 6.86 7.53 9.19 0.00 4.25 6.16 8.62 1.28 3.33 9.09 9.69 0.66 0.63 1.59 15 E1_Ab KnownBoundary 0 0.00 9.21 8.19 8.89 19.35 12.38 4.20 16.88 7.58 7.41 9.42 6.30 0.00 0.00 6.30 8.03 4.21 9.45 8.38 10.87 0.00 0.00 3.59 16 ER1b ExonRegion 0 0.30 2.16 4.07 0.97 3.89 3.05 0.63 3.36 2.03 2.06 4.15 2.35 0.00 1.61 3.48 5.68 0.33 2.44 0.68 4.20 0.31 0.60 0.27 17 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 8.06 0.00 2.55 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.21 0.00 0.00 0.00 0.00 4.35 18 ER1c ExonRegion 0 0.19 0.78 0.43 0.46 0.44 2.28 0.30 0.93 0.92 0.89 4.97 0.00 0.88 2.36 1.76 5.34 9.28 2.51 4.96 2.07 0.28 0.48 1.98 19 E1_Da KnownBoundary 0 3.78 3.16 6.77 0.00 7.13 0.00 0.00 2.38 3.12 3.33 9.42 0.00 0.00 8.12 23.86 12.65 15.99 6.76 4.80 2.81 3.15 0.00 0.00 20 E1_Ad KnownBoundary 0 3.19 5.66 1.77 0.00 3.65 12.72 0.00 3.70 19.24 18.10 17.21 0.00 0.00 14.24 0.00 16.41 21.51 4.85 4.80 18.86 2.72 0.00 19.89 21 ER1d ExonRegion 0 3.65 4.86 2.45 0.00 4.01 8.15 0.00 2.98 14.14 13.83 19.11 0.00 0.00 16.42 12.41 23.45 23.11 4.11 7.08 14.89 3.92 0.35 14.19 22 ER1e ExonRegion 0 1.97 2.62 0.79 2.08 1.72 19.39 0.83 9.32 15.18 21.31 21.36 0.00 1.51 22.32 8.80 28.92 39.50 17.88 13.77 16.95 5.68 6.46 17.52 23 E1b_E8b KnownJunction 0 0.00 0.00 0.00 4.06 0.00 28.56 1.81 14.38 7.67 19.18 5.00 0.00 6.82 7.18 8.90 10.42 29.64 22.80 21.74 15.15 8.53 15.19 0.00 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 34 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E7_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER7b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER8a ExonRegion 0 0.30 0.00 0.00 0.39 0.00 2.88 0.19 4.20 1.94 2.62 1.93 0.00 0.67 2.78 2.07 3.82 3.77 2.90 4.55 3.95 1.26 1.49 0.00 39 ER8b ExonRegion 0 6.95 8.13 2.30 11.90 16.10 30.03 3.78 17.47 25.58 23.72 32.69 10.82 9.46 34.16 20.72 20.43 36.07 15.34 22.47 23.56 7.71 8.97 3.62 40 E8_Da KnownBoundary 0 14.37 15.72 7.57 22.77 28.27 50.03 8.52 19.67 47.11 38.12 47.75 12.45 20.45 46.15 22.25 26.06 52.17 13.68 4.80 25.95 8.53 5.45 4.35 41 E8a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER8c ExonRegion 0 12.18 13.30 7.46 17.50 14.35 29.07 4.10 18.24 40.15 34.15 48.18 8.98 31.88 49.64 36.61 52.42 70.51 14.66 35.17 37.91 14.42 7.60 12.25 43 E8b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E8b_E11a KnownJunction 0 0.00 0.00 1.51 1.60 0.00 0.00 1.99 0.00 1.10 0.00 7.21 0.00 0.00 22.13 9.27 19.74 0.00 3.73 3.48 9.78 0.00 2.45 3.59 45 E8b_E12a KnownJunction 0 3.63 9.60 9.49 17.11 14.94 32.59 2.25 20.58 41.52 30.78 46.17 0.00 19.97 16.66 15.45 30.50 67.79 10.86 24.94 25.76 5.93 14.21 15.11 46 E8b_E14a NovelJunction 0 0.00 3.16 2.66 0.00 0.00 0.00 0.00 0.00 6.08 3.87 2.32 5.40 0.00 11.48 8.90 0.00 4.11 10.94 0.00 3.26 0.00 2.57 0.00 47 ER8d ExonRegion 0 6.08 12.37 6.99 15.22 8.70 28.81 4.74 18.22 39.37 33.74 52.11 8.48 32.63 45.07 25.87 47.80 75.78 17.78 34.51 28.81 11.39 17.54 16.76 48 ER9a ExonRegion 0 1.28 0.41 0.00 1.24 2.72 0.00 1.61 2.62 0.75 0.00 0.39 0.00 5.79 0.74 2.08 2.76 3.35 0.00 0.00 0.43 0.00 0.00 0.60 49 E9_Da NovelBoundary 0 0.00 0.00 0.00 1.63 0.00 0.00 4.28 0.00 1.74 0.00 0.00 0.00 13.47 0.00 0.00 0.00 15.90 0.00 0.00 2.88 0.00 0.00 0.00 50 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E9a_E11a NovelJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.10 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER10a ExonRegion 0 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E11_Aa NovelBoundary 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 1.52 1.19 0.00 0.00 0.00 6.82 0.00 0.00 0.00 11.87 0.00 0.00 0.00 0.00 0.00 0.00 55 ER11a ExonRegion 0 2.48 0.10 1.23 0.57 0.98 1.21 2.84 1.60 1.99 0.06 9.76 9.29 8.24 13.15 9.77 13.27 0.81 3.70 7.07 4.62 0.59 3.51 2.87 56 E11_Ab KnownBoundary 0 0.00 0.00 1.39 1.73 8.15 2.90 4.06 2.55 3.30 0.00 15.32 6.30 6.82 12.01 13.35 8.37 0.00 4.27 3.76 2.88 2.53 3.12 4.35 57 ER11b ExonRegion 0 2.08 0.00 0.34 0.91 2.82 0.82 1.50 2.40 6.59 0.66 19.54 2.97 5.99 8.00 5.91 22.24 15.53 1.33 6.02 6.50 3.51 2.32 1.41 58 E11_Da KnownBoundary 0 0.00 0.00 0.00 2.06 7.05 0.00 5.56 2.55 6.86 1.67 11.85 0.00 6.82 9.59 4.57 11.79 26.83 0.00 14.12 8.82 0.00 3.00 0.00 59 ER11c ExonRegion 0 2.54 0.05 1.07 1.36 7.43 0.00 3.97 2.55 5.62 1.15 13.24 9.42 5.86 17.95 14.43 15.60 16.09 0.32 5.34 11.28 1.10 0.94 0.00 60 E11_Db NovelBoundary 0 7.26 0.00 1.69 0.00 4.24 0.00 1.99 1.89 2.75 0.00 12.21 5.85 6.82 20.78 31.15 16.75 3.83 0.00 0.00 13.81 2.53 0.00 0.00 61 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E11c_E12a KnownJunction 0 0.00 0.00 1.36 0.00 0.00 0.00 0.00 2.51 3.53 0.00 21.64 12.30 6.82 14.95 8.90 21.02 4.58 2.57 0.00 5.11 2.53 0.00 0.00 63 ER11d ExonRegion 0 4.07 0.00 1.23 0.26 2.16 0.00 0.00 2.39 3.71 0.22 16.95 10.66 9.02 18.99 18.97 17.38 3.68 1.85 0.49 8.10 2.20 0.00 0.00 64 ER12a ExonRegion 0 12.68 16.27 12.21 15.97 19.42 31.76 9.25 31.73 27.84 28.07 74.67 23.76 30.12 43.63 30.79 35.62 45.91 18.47 20.85 29.67 8.65 10.46 14.46 65 E12_Da KnownBoundary 0 0.00 0.00 0.00 3.13 0.00 2.84 6.05 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 7.35 0.00 0.00 0.00 0.00 0.00 0.00 4.35 66 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E12a_E14a KnownJunction 0 19.56 25.13 3.81 7.03 15.45 37.54 12.94 15.48 17.13 24.23 41.64 5.40 25.32 43.26 19.66 28.62 38.99 15.21 4.71 38.22 0.00 5.69 17.58 68 E12a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.85 0.00 0.00 0.00 0.00 69 ER12b ExonRegion 0 2.02 0.00 0.00 2.66 1.66 0.42 1.32 0.82 0.00 0.51 0.48 4.55 0.00 0.43 0.76 3.34 2.08 0.00 0.00 1.36 0.00 0.00 1.45 70 ER13a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.55 0.40 1.55 0.56 0.52 3.50 2.15 0.06 2.86 0.00 1.79 1.99 0.00 3.85 0.64 1.33 0.63 2.66 71 ER14a ExonRegion 0 12.37 19.61 9.83 15.67 14.95 29.21 5.21 16.90 30.74 17.68 48.84 8.40 13.40 41.18 26.64 38.91 38.33 20.73 13.69 23.56 6.33 6.57 8.62 72 E14_Da KnownBoundary 0 10.45 10.46 3.02 20.58 3.23 11.70 4.02 9.90 17.01 13.00 19.06 0.00 6.82 17.19 21.14 21.70 20.66 20.77 4.42 15.21 0.00 0.00 7.68 73 E14a_E14b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E14_Db KnownBoundary 0 10.15 8.88 11.56 23.21 22.92 11.07 3.53 7.19 19.94 1.64 29.43 0.00 0.00 5.47 9.77 27.77 12.90 2.45 4.24 6.33 5.81 0.00 4.10 75 E14b_E14c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER14b ExonRegion 1 29.63 31.52 14.09 43.61 33.45 28.42 7.28 24.20 49.40 12.04 58.95 0.00 30.49 52.78 60.93 52.01 46.21 21.25 38.22 25.53 7.71 6.25 11.75 77 ER14c ExonRegion 0 37.49 54.05 15.58 32.90 60.01 42.42 15.29 39.64 46.96 37.28 55.27 23.86 30.70 38.46 41.27 42.72 41.41 15.96 22.70 28.60 5.52 11.51 8.59 78 E14_Ab KnownBoundary 0 23.56 20.39 5.38 12.29 27.16 6.87 3.67 13.35 16.38 23.80 20.27 0.00 0.00 2.83 6.30 3.33 3.55 4.85 3.86 13.68 0.00 3.12 0.00 79 E14_Ac KnownBoundary 0 0.00 5.79 6.71 1.63 11.80 5.56 1.99 24.81 17.25 11.93 20.69 0.00 0.00 4.53 0.00 8.12 4.77 0.00 0.00 6.20 2.41 2.94 0.00 80 ER14d ExonRegion 0 34.92 27.45 15.93 14.31 74.92 31.17 11.25 44.08 33.97 41.29 44.46 8.66 23.45 32.48 29.01 20.80 18.15 9.24 6.37 25.53 3.31 10.42 5.87 81 ER14e ExonRegion 0 21.11 17.38 16.27 20.67 35.16 18.61 7.63 29.31 27.44 30.05 23.34 20.47 15.73 17.07 19.51 10.30 12.32 2.11 10.40 10.61 1.75 10.21 3.96 82 E14_Dc KnownBoundary 0 37.19 32.89 19.63 17.41 16.72 13.74 0.00 7.52 18.98 19.18 2.58 6.30 0.00 26.13 11.99 3.50 0.00 0.00 0.00 6.46 2.84 3.12 4.35 83 ER14f ExonRegion 1 13.38 18.41 6.87 9.08 19.68 14.02 1.12 3.02 12.25 10.50 2.85 13.14 3.34 7.85 6.10 7.15 5.82 0.03 0.00 5.16 0.56 2.61 1.54 84 ER14g ExonRegion 0 1.81 1.74 0.00 0.00 7.64 5.24 0.19 0.00 2.47 1.80 0.28 6.80 0.00 0.00 0.83 0.42 0.00 0.00 0.00 2.74 0.00 0.00 0.00 85 ER15a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.72 0.00 0.00 0.00 0.00 86 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 ER16a ExonRegion 0 0.81 0.39 0.70 1.56 1.03 0.00 0.00 0.00 2.48 1.00 0.74 0.00 0.00 0.77 1.12 0.00 0.64 0.53 1.23 1.23 0.00 0.00 0.00