Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 VNN2 Gene 0 86.21 1.20 0.49 4.78 37.64 7.15 8.24 8.52 3.74 0.80 5.16 237.07 225.03 265.29 234.76 96.22 30.42 0.00 0.00 0.10 0.16 0.92 0.00 2 392389 Transcript 1 29.52 0.00 0.00 0.00 12.49 7.62 8.25 1.59 2.93 0.00 0.62 25.79 28.59 75.03 54.99 139.53 11.81 0.00 0.00 0.00 0.00 0.00 0.00 3 335846 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 422400 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 418593 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.36 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 326499 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 1 48.90 0.00 0.00 0.00 24.99 9.45 14.29 0.67 2.76 0.00 1.23 11.08 23.08 116.51 72.27 166.52 14.83 0.00 0.00 0.00 0.00 0.00 0.00 8 E1_Da NovelBoundary 1 6.45 0.00 0.00 2.06 0.00 0.00 0.00 7.27 1.68 0.00 2.68 0.00 0.00 12.07 9.27 37.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E2b KnownJunction 1 10.15 0.00 0.00 0.00 0.00 5.79 2.21 2.51 3.10 0.00 0.00 40.51 34.09 33.55 37.70 112.53 8.79 0.00 0.00 0.00 0.00 0.00 0.00 10 I1_SR1 SilentIntronRegion 0 12.89 0.00 0.18 0.21 4.39 0.45 2.41 1.91 1.21 0.08 0.00 37.44 51.55 17.89 6.82 15.30 1.84 0.00 0.00 0.00 0.00 0.00 0.00 11 I1_AR3 ActiveIntronRegion 0 9.32 0.00 0.00 0.88 10.97 0.52 2.70 1.89 0.67 0.00 0.27 43.70 64.98 16.20 7.54 10.81 2.11 0.00 0.00 0.00 0.00 0.00 0.00 12 I1_SR2 SilentIntronRegion 0 18.63 0.00 0.00 0.88 10.07 1.42 1.67 2.05 0.94 0.13 0.07 24.91 35.23 10.87 7.34 10.12 1.45 0.00 0.00 0.00 0.00 0.00 0.00 13 I1_AR4 ActiveIntronRegion 0 63.93 3.02 0.00 0.00 9.27 2.72 1.31 0.00 0.91 0.00 0.96 15.26 30.87 10.60 9.97 17.66 1.63 0.00 0.00 0.00 0.00 0.00 0.00 14 E2_Aa NovelBoundary 0 89.65 0.00 3.19 9.96 45.59 4.77 4.11 7.97 1.39 0.00 0.00 39.46 76.78 11.95 5.44 15.47 4.77 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 56.49 0.00 1.37 3.75 11.06 5.42 5.36 8.90 0.72 0.00 0.74 71.56 91.21 102.03 94.80 44.78 16.67 0.00 0.00 0.00 0.00 0.00 0.00 16 E2_Ab KnownBoundary 1 123.06 0.00 0.00 5.73 16.64 2.27 18.06 15.12 0.00 0.00 0.00 134.59 68.83 199.31 85.91 104.42 54.14 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2b ExonRegion 0 91.52 0.60 0.00 3.14 14.63 5.21 6.21 13.95 3.13 0.00 2.99 144.55 124.55 223.67 139.16 113.18 44.34 0.00 0.00 0.80 0.00 0.00 0.00 18 E2_Da NovelBoundary 0 20.23 0.00 0.00 0.00 18.42 2.38 2.25 0.00 0.00 0.00 0.00 0.00 27.27 4.94 5.32 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E3a KnownJunction 0 37.86 3.35 0.00 3.10 10.87 12.32 1.81 12.57 5.27 0.00 5.00 136.39 90.74 185.30 213.98 83.23 35.53 0.00 0.00 3.13 0.00 0.00 0.00 20 I2 Intron 0 25.24 0.00 0.00 0.00 3.30 0.00 0.54 1.06 0.00 0.00 0.79 10.58 8.62 3.34 3.72 8.56 2.72 0.00 0.00 0.00 0.00 0.00 0.00 21 I2_AR1 ActiveIntronRegion 0 23.17 0.00 0.00 0.00 3.60 0.00 0.78 1.49 0.00 0.00 0.20 14.71 6.87 2.97 1.95 10.91 1.82 0.00 0.00 0.00 0.00 0.00 0.00 22 I2_SR1 SilentIntronRegion 0 28.29 0.00 0.00 0.00 3.19 0.00 0.36 0.71 0.00 0.00 1.38 7.28 10.50 3.84 5.53 6.79 3.67 0.00 0.00 0.00 0.00 0.00 0.00 23 E3_Aa NovelBoundary 0 48.01 0.00 0.00 2.06 0.00 2.21 0.00 2.55 0.00 0.00 0.00 31.51 20.45 0.00 9.89 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 0 82.50 2.76 0.00 6.67 27.51 9.57 8.84 11.06 4.56 0.00 5.13 156.19 145.07 295.94 226.90 191.19 40.19 0.00 0.00 0.57 0.00 0.00 0.00 25 E3a_E4a KnownJunction 0 83.13 0.00 0.00 9.56 30.56 19.36 9.80 8.21 4.63 0.00 4.69 259.73 165.41 245.75 168.24 80.41 29.64 0.00 0.00 3.07 0.00 0.00 0.00 26 ER4a ExonRegion 0 100.88 1.07 0.34 4.94 45.40 9.00 11.86 7.68 4.87 0.89 4.06 180.40 159.83 300.99 211.45 94.94 31.67 0.00 0.00 0.37 0.00 0.55 0.00 27 E4_Da NovelBoundary 0 126.47 0.00 0.00 1.63 15.37 0.00 2.25 9.12 0.00 0.00 2.32 12.60 34.25 11.42 19.66 12.90 4.77 0.00 0.00 0.00 0.00 0.00 0.00 28 E4a_E5a KnownJunction 0 160.99 0.00 1.60 3.33 28.44 5.11 7.99 5.91 8.97 2.39 4.79 239.63 143.01 325.68 243.90 117.41 36.28 0.00 0.00 0.00 0.00 0.00 0.00 29 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.36 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix Intron 0 20.88 0.00 0.00 0.38 4.98 0.00 0.99 0.48 0.00 0.00 0.00 18.87 16.79 8.39 10.23 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 Ix_AR1 ActiveIntronRegion 0 31.46 0.00 0.00 0.06 8.06 0.00 0.43 0.72 0.00 0.00 0.00 17.26 22.50 6.47 12.51 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 Ix_SR1 SilentIntronRegion 0 29.31 0.00 0.00 1.08 6.49 0.00 2.59 0.00 0.00 0.00 0.00 25.46 15.24 10.13 13.56 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER5a ExonRegion 0 71.71 2.15 0.42 4.47 35.06 5.46 9.42 9.21 5.47 0.71 5.71 241.94 203.76 339.70 246.43 128.48 29.10 0.00 0.00 0.00 0.00 1.61 0.00 35 E5a_E6a KnownJunction 0 94.31 0.00 0.00 6.19 41.43 2.90 14.09 17.83 6.71 1.50 7.53 253.28 201.93 388.25 277.03 100.83 17.86 0.00 0.00 0.00 0.00 3.06 0.00 36 ER6a ExonRegion 0 134.40 2.12 0.75 8.44 49.92 4.83 11.23 9.25 3.66 1.52 8.02 320.26 345.86 327.47 271.12 111.03 33.95 0.00 0.00 0.00 0.00 1.92 0.00 37 E6a_E7a KnownJunction 0 76.09 5.26 0.00 8.76 28.52 11.07 9.67 9.00 0.00 0.00 2.68 114.34 102.43 144.92 146.86 37.85 17.58 0.00 0.00 0.00 0.00 0.00 0.00 38 ER7a ExonRegion 0 89.07 2.03 1.09 5.99 31.98 7.67 9.76 10.43 2.35 0.66 4.82 366.26 379.15 337.48 327.37 91.77 38.34 0.00 0.00 0.00 0.00 1.78 0.00 39 E7a_E8a KnownJunction 0 107.43 0.00 0.00 7.06 42.11 8.40 19.74 17.17 4.63 1.10 9.90 313.30 371.40 452.00 395.33 90.23 62.93 0.00 0.00 0.00 2.29 2.76 0.00 40 ER8a ExonRegion 0 69.90 0.17 0.30 2.99 43.43 8.48 4.41 7.11 3.73 0.96 5.41 261.57 225.79 216.30 255.57 54.18 27.28 0.00 0.00 0.00 0.54 0.52 0.00 41 ER8b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00