Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IPCEF1 Gene 0 33.42 2.55 0.99 2.49 29.66 5.58 7.43 6.62 6.47 0.72 311.66 310.80 217.98 622.21 236.75 497.28 483.64 0.82 0.98 2.38 0.95 1.09 0.75 2 265198 Transcript 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.37 6.30 0.00 29.73 0.00 19.48 43.85 0.00 0.00 0.00 0.00 0.00 0.00 3 367220 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 422970 Transcript 0 0.44 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 3.43 2.17 1.54 2.64 0.00 0.00 0.00 0.00 0.00 0.00 5 484827 Transcript 1 1.89 0.05 0.00 0.00 1.83 0.05 2.68 1.36 0.26 0.03 25.89 42.84 9.13 52.40 19.32 59.99 52.81 0.00 0.08 0.06 0.00 0.00 0.00 6 470622 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 3.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 1.04 0.00 2.07 14.60 5.13 13.08 26.79 0.00 1.71 0.00 0.00 0.00 0.00 8 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.12 4.45 8.46 41.33 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.53 5.85 0.00 8.28 0.00 0.00 0.00 0.00 0.00 0.00 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 8.66 2.90 0.00 0.00 0.00 0.00 2.68 0.00 0.00 53.68 32.14 25.98 4.77 0.00 0.00 0.00 3.15 0.00 0.00 12 ER3a ExonRegion 0 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.18 2.82 6.15 2.27 0.00 0.00 0.00 0.00 0.00 0.00 13 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER4a ExonRegion 0 0.14 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.14 0.00 7.47 1.67 0.53 33.92 7.39 12.50 88.67 0.00 1.74 0.00 0.00 0.00 0.00 15 E4a_E5a KnownJunction 1 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 6.63 6.30 0.00 73.99 6.06 25.04 123.70 0.00 4.80 0.00 0.00 0.00 0.00 16 ER5a ExonRegion 1 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.12 0.00 12.33 4.33 7.34 88.71 12.97 54.79 125.31 0.00 1.62 0.00 1.58 0.00 0.00 17 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.69 0.00 0.00 77.29 16.44 39.48 86.21 0.00 0.00 0.00 2.72 0.00 0.00 18 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.37 6.30 0.00 29.73 0.00 19.48 43.85 0.00 0.00 0.00 0.00 0.00 0.00 19 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 1.54 0.00 42.04 9.74 8.21 103.13 10.15 57.21 105.63 0.00 0.00 0.00 2.20 0.00 0.00 20 ER6b ExonRegion 1 1.88 0.00 0.00 0.00 0.30 3.67 2.94 0.00 3.05 0.00 92.67 39.57 16.94 220.29 38.76 118.55 192.37 0.00 0.00 0.00 1.96 1.91 0.00 21 E6a_E7a KnownJunction 0 6.00 0.00 0.00 0.00 0.00 4.88 6.71 1.60 9.64 0.00 151.04 96.33 47.40 317.80 67.87 181.41 283.68 0.00 0.00 0.00 3.15 2.76 0.00 22 E7_Aa NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89.97 49.52 25.65 97.65 6.30 288.73 97.52 0.00 0.00 0.00 0.00 0.00 0.00 23 ER7a ExonRegion 1 6.90 1.22 0.00 0.00 8.94 0.81 7.42 1.38 7.24 0.51 406.25 211.91 71.65 574.57 149.81 639.99 667.67 0.00 0.96 1.28 0.83 0.38 0.00 24 E7a_E8a KnownJunction 1 10.59 0.00 0.00 0.00 18.51 2.10 16.52 4.97 5.01 0.00 453.33 300.55 90.74 543.65 145.25 900.53 969.24 0.00 0.00 0.00 6.05 2.69 0.00 25 Ix_SR3 SilentIntronRegion 0 4.42 0.06 0.16 0.00 1.18 0.16 2.18 1.23 2.90 0.00 33.51 71.35 31.35 21.02 17.73 103.34 88.11 0.00 0.09 0.25 0.06 0.00 0.00 26 Ix_AR7 ActiveIntronRegion 0 14.87 0.00 0.00 0.00 0.00 0.00 2.68 3.24 3.24 0.00 56.63 110.08 44.91 24.85 30.03 133.60 191.86 0.00 0.00 0.00 0.17 0.00 0.00 27 Ix_AR6 ActiveIntronRegion 0 14.29 0.00 0.00 0.00 0.00 0.00 1.32 3.46 3.09 0.00 47.36 86.05 44.56 20.50 31.91 114.06 186.50 0.00 0.00 0.00 2.20 0.00 0.00 28 Ix_AR5 ActiveIntronRegion 0 5.76 0.00 0.00 0.32 3.79 0.00 2.13 1.85 1.99 0.00 51.88 73.28 62.81 18.54 36.56 146.13 130.35 0.00 0.50 0.00 0.61 0.00 0.00 29 Ix_SR2 SilentIntronRegion 0 7.12 0.05 0.10 0.49 2.93 0.34 1.87 1.51 2.26 0.09 32.77 53.97 33.56 23.69 39.11 125.95 87.08 0.00 0.00 0.11 0.18 0.06 0.00 30 ER8a ExonRegion 0 4.20 0.00 0.00 0.00 14.28 7.86 8.84 4.06 7.39 0.84 489.18 385.97 209.09 745.65 222.49 971.72 843.96 0.00 0.00 0.86 3.48 2.37 0.40 31 E8_Da NovelBoundary 0 10.52 0.00 0.00 2.06 4.16 7.50 1.90 0.00 2.58 0.00 38.54 69.32 60.87 85.11 20.40 220.03 100.33 0.00 0.00 0.00 0.00 0.00 0.00 32 E8a_E9a KnownJunction 0 12.97 0.00 1.24 0.00 27.84 2.38 17.80 5.09 9.55 1.42 608.79 398.23 241.87 756.02 299.90 1211.39 764.75 0.00 0.00 3.26 0.00 0.00 3.50 33 Ix Intron 0 4.80 0.15 0.00 0.77 4.45 0.69 2.05 1.07 1.04 0.00 24.48 34.53 34.66 47.34 26.20 103.61 68.76 0.10 0.48 0.24 0.08 0.08 0.00 34 Ix_AR1 ActiveIntronRegion 0 6.94 0.00 0.00 0.50 5.48 0.00 4.86 0.00 1.38 0.00 55.20 68.27 54.05 74.73 37.21 177.97 114.48 0.00 0.00 0.00 0.54 0.00 0.00 35 ER9a ExonRegion 0 7.97 0.11 0.00 0.00 16.39 4.81 11.16 6.00 8.53 0.45 598.77 503.36 242.32 763.38 269.41 894.36 822.01 0.00 0.93 2.75 3.12 0.14 1.67 36 E9a_E10b KnownJunction 0 12.22 0.00 0.00 0.00 4.33 0.00 9.23 6.33 4.31 0.00 383.78 470.25 199.18 724.88 277.64 727.67 560.73 6.26 4.42 3.00 0.00 0.00 0.00 37 Ix Intron 0 8.89 0.16 0.41 0.68 4.68 0.56 3.01 1.61 2.15 0.00 37.30 76.50 66.30 62.74 38.17 114.04 105.18 0.15 0.00 0.41 0.11 0.13 0.19 38 Ix_SR2 SilentIntronRegion 0 10.00 0.13 0.41 0.60 3.83 0.82 2.52 1.55 1.34 0.00 35.92 74.48 60.22 61.38 41.71 125.56 117.42 0.12 0.00 0.54 0.14 0.00 0.38 39 Ix_AR1 ActiveIntronRegion 0 12.68 0.54 1.29 1.29 8.77 1.30 1.59 5.67 3.72 0.00 43.99 81.48 116.18 93.42 61.65 206.91 156.24 0.00 0.00 1.51 0.00 0.00 0.00 40 Ix_SR1 SilentIntronRegion 0 7.30 0.16 0.32 0.72 5.21 0.19 3.70 1.28 2.90 0.00 38.23 78.40 68.18 61.30 31.98 92.25 86.75 0.19 0.00 0.15 0.08 0.29 0.00 41 Ix Intron 0 6.34 0.27 0.18 0.80 6.34 0.54 2.44 1.36 0.85 0.00 30.08 44.32 45.65 47.63 25.88 85.67 62.78 0.00 0.21 0.56 0.00 0.00 0.10 42 Ix_SR2 SilentIntronRegion 0 6.06 0.30 0.27 1.04 5.91 0.73 1.72 1.51 0.40 0.00 25.29 44.05 47.14 50.06 29.97 85.62 53.86 0.00 0.00 0.66 0.00 0.00 0.21 43 Ix_AR1 ActiveIntronRegion 0 7.15 0.37 0.17 0.74 6.33 0.60 3.31 1.01 1.33 0.00 28.78 40.61 43.63 40.85 23.09 75.82 59.95 0.00 0.58 0.73 0.00 0.00 0.00 44 Ix_SR1 SilentIntronRegion 0 5.46 0.00 0.00 0.36 7.44 0.00 2.51 1.67 0.99 0.00 44.42 52.55 46.30 55.31 21.57 105.62 90.35 0.00 0.00 0.00 0.00 0.00 0.00 45 E10_Aa NovelBoundary 0 10.37 0.00 0.00 0.00 0.00 0.00 3.80 0.00 3.30 0.00 47.54 52.52 53.73 43.62 41.66 186.02 113.14 2.40 0.00 0.00 0.00 0.00 0.00 46 ER10a ExonRegion 0 1.89 0.05 0.00 0.00 1.83 0.05 2.68 1.36 0.26 0.03 25.89 42.84 9.13 52.40 19.32 59.99 52.81 0.00 0.08 0.06 0.00 0.00 0.00 47 E10_Ab KnownBoundary 0 6.96 0.00 0.00 0.00 7.98 0.00 10.64 4.56 0.00 0.00 52.86 89.28 19.48 82.05 28.06 136.55 105.28 2.11 0.00 0.00 0.00 0.00 0.00 48 ER10b ExonRegion 0 7.44 3.02 0.00 1.10 11.72 0.85 10.18 13.35 9.33 1.15 332.33 380.25 136.01 598.12 178.63 548.31 513.06 0.00 1.59 1.47 0.00 1.83 0.00 49 E10a_E11a KnownJunction 0 19.78 2.76 0.00 2.00 10.87 2.90 13.51 15.90 10.21 1.13 528.98 464.25 161.68 832.72 238.83 790.39 854.98 0.00 0.00 2.68 0.00 0.00 0.00 50 ER11a ExonRegion 0 23.08 2.67 0.00 1.71 15.59 4.05 8.45 9.71 5.87 0.17 622.78 557.49 293.07 931.17 254.77 1144.55 938.84 4.83 0.00 3.66 0.00 0.00 1.74 51 E11a_E12a KnownJunction 0 23.19 0.00 0.00 0.00 4.33 8.23 4.37 8.75 7.99 0.00 434.53 622.40 372.38 899.12 342.05 1099.03 705.10 6.09 0.00 0.00 0.00 0.00 0.00 52 ER12a ExonRegion 0 17.15 1.99 0.88 2.29 15.23 3.09 5.73 7.99 12.27 0.81 547.57 483.06 252.53 955.60 256.10 949.85 822.48 3.78 0.77 2.56 0.53 1.50 0.00 53 E12_Da KnownBoundary 0 17.86 6.71 0.00 1.86 24.11 2.33 9.01 3.82 18.08 0.00 693.12 567.63 334.23 983.29 335.25 909.68 957.46 0.00 0.00 0.00 0.00 0.00 0.00 54 ER12b ExonRegion 0 20.61 3.52 0.00 1.46 15.01 3.95 5.98 7.45 12.79 0.28 559.16 548.93 363.03 962.83 239.98 845.93 794.74 0.87 0.00 5.17 0.70 2.14 0.93 55 E12_Db NovelBoundary 1 10.15 0.00 0.00 0.00 7.64 0.00 2.25 6.08 1.79 0.00 62.96 61.22 32.63 60.98 59.71 203.28 88.17 0.00 0.00 0.00 0.00 0.00 0.00 56 E12b_E13a KnownJunction 0 14.30 3.35 0.00 0.00 3.48 0.00 0.00 0.00 5.61 1.67 458.01 503.86 339.43 625.53 128.69 371.70 716.69 0.00 0.00 6.52 0.00 0.00 0.00 57 Ix_SR3 SilentIntronRegion 0 8.90 0.57 0.13 0.36 4.03 0.84 2.74 1.08 1.74 0.12 46.96 64.53 41.98 53.47 33.91 122.22 70.41 0.16 0.00 0.15 0.08 0.00 0.00 58 Ix_AR2 ActiveIntronRegion 0 10.29 0.31 0.28 0.00 9.92 0.00 2.05 1.50 2.28 0.00 56.08 62.25 20.95 50.98 45.52 117.12 68.62 0.00 0.00 1.32 0.00 0.00 0.00 59 Ix_AR1 ActiveIntronRegion 0 4.87 0.00 0.00 0.00 2.72 0.21 3.58 0.13 0.42 0.00 8.23 31.17 50.19 19.46 7.05 35.78 27.91 0.00 0.00 0.86 0.00 0.00 0.00 60 ER13a ExonRegion 0 22.46 2.92 1.57 5.54 24.59 2.55 5.77 5.15 10.60 0.67 448.52 650.76 480.68 943.14 233.81 795.98 797.78 0.00 0.00 3.21 0.00 4.16 0.77 61 E13a_E14a KnownJunction 0 20.89 0.00 3.25 11.85 61.97 5.28 9.58 2.42 12.64 0.00 683.23 921.00 583.40 1079.06 248.47 904.72 1129.69 0.00 0.00 3.26 0.00 2.45 0.00 62 ER14a ExonRegion 0 21.07 2.54 0.66 2.78 21.54 5.45 9.12 5.35 5.63 0.66 386.75 444.44 304.46 897.83 184.39 649.81 711.30 0.80 0.00 1.85 2.41 1.65 0.20 63 E14_Ab KnownBoundary 0 26.08 6.45 2.66 2.06 24.36 5.79 2.25 6.86 9.66 0.00 387.31 370.02 351.60 958.45 244.14 645.13 714.35 0.00 0.00 3.26 2.72 0.00 4.01 64 ER14b ExonRegion 0 22.71 1.57 0.79 3.01 27.12 7.35 7.28 3.78 7.51 0.51 382.71 370.04 240.38 868.75 247.57 689.04 678.45 0.41 0.00 1.61 0.90 3.75 0.57 65 E14_Da KnownBoundary 0 24.89 0.00 1.18 1.93 42.87 5.45 5.61 0.00 9.06 0.00 491.65 446.40 219.14 896.76 339.45 639.32 786.63 0.00 0.00 3.26 0.00 0.00 0.00 66 E14a_E14c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 67 ER14c ExonRegion 0 43.37 3.03 1.27 2.78 37.47 6.68 8.16 7.83 6.48 0.87 292.14 291.20 219.48 595.24 271.78 445.85 429.72 0.85 1.33 2.63 0.90 0.80 0.96 68 E14_Ac KnownBoundary 1 79.72 0.00 1.83 1.86 37.61 0.00 0.00 2.55 2.95 0.00 56.86 112.09 101.29 136.97 152.54 60.07 83.12 0.00 0.00 0.00 0.00 0.00 0.00 69 ER14d ExonRegion 0 14.53 0.66 0.33 1.54 6.40 0.00 1.30 1.19 0.35 0.00 24.14 29.95 25.19 49.54 52.72 27.57 42.13 0.00 0.00 2.05 0.00 0.00 0.00 70 ER14e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.33 0.00 1.50 2.68 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00