Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C6orf182 Gene 0 20.06 34.52 23.06 23.74 37.24 52.68 52.94 25.09 26.35 39.56 27.06 49.80 41.88 29.55 33.30 29.15 43.27 20.82 12.62 36.08 13.78 25.97 17.07 2 407272 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 336977 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368970 Transcript 0 14.89 23.94 6.00 9.19 23.01 61.39 65.18 6.57 14.26 8.65 18.00 0.00 0.00 22.37 4.45 24.95 49.56 22.63 0.00 35.92 12.54 22.78 10.50 5 359793 Transcript 0 0.58 1.37 1.98 0.82 2.18 2.01 4.51 3.10 2.24 2.48 0.82 3.37 0.71 0.19 1.24 3.21 2.26 1.14 0.86 2.31 1.19 1.38 1.19 6 368968 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 IG3 Intergenic 0 1.64 3.25 1.98 1.05 6.75 19.84 4.71 3.05 6.35 7.13 6.27 0.73 1.39 6.56 4.76 10.26 7.65 13.40 3.45 5.15 9.42 6.44 6.20 8 IG3_AR1 ActiveIntergenicRegion 0 1.64 3.25 1.98 1.05 6.77 19.88 4.72 3.06 6.36 7.15 6.29 0.74 1.40 6.57 4.77 10.28 7.67 13.43 3.45 5.16 9.44 6.45 6.22 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 4.58 3.96 0.93 0.65 4.58 12.23 9.58 1.95 1.42 1.96 6.77 0.00 2.00 6.93 7.05 8.76 12.03 3.40 4.72 4.98 6.10 3.32 6.04 11 E1a_E2a KnownJunction 0 0.00 0.00 1.74 0.00 4.33 2.73 12.14 2.55 0.00 2.66 2.63 0.00 0.00 2.47 0.00 13.07 9.54 4.10 0.00 9.72 2.35 0.00 0.00 12 E1a_E3a NovelJunction 1 3.78 5.85 0.00 2.06 4.33 4.32 17.71 4.56 0.00 4.54 5.37 0.00 0.00 0.00 24.72 21.53 17.58 4.64 12.80 9.27 12.05 3.00 0.00 13 E1a_E5a KnownJunction 0 14.89 23.94 6.00 9.19 23.01 61.39 65.18 6.57 14.26 8.65 18.00 0.00 0.00 22.37 4.45 24.95 49.56 22.63 0.00 35.92 12.54 22.78 10.50 14 E1a_E6a NovelJunction 0 6.67 22.56 0.00 1.90 0.00 62.07 16.87 4.35 4.57 13.30 2.32 0.00 0.00 4.59 0.00 12.65 27.68 4.64 0.00 6.39 0.00 0.00 3.33 15 E2_Aa NovelBoundary 0 7.41 3.35 29.09 7.92 3.74 4.77 26.32 10.80 2.86 4.16 0.00 0.00 0.00 2.12 4.57 0.00 0.00 0.00 13.65 5.75 0.00 0.00 3.84 16 ER2a ExonRegion 0 3.36 2.27 3.20 4.69 4.90 0.85 3.61 1.95 2.91 4.09 2.24 1.60 2.07 1.25 0.00 4.07 12.33 5.15 0.00 4.90 1.35 0.00 0.00 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 2.68 5.70 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 18 E3_Aa NovelBoundary 0 7.19 3.22 16.00 5.23 4.16 5.17 29.68 4.11 16.93 24.71 2.58 0.00 0.00 5.30 0.00 12.22 4.39 16.25 0.00 33.81 3.03 3.12 16.82 19 ER3a ExonRegion 1 0.00 0.00 0.18 1.46 1.58 1.67 2.34 0.03 1.92 0.25 3.59 0.54 0.00 2.26 4.04 0.00 13.50 0.46 5.63 4.33 0.04 1.41 0.00 20 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 3.36 0.00 2.37 0.00 0.00 0.00 0.00 0.00 17.77 0.00 0.00 6.39 0.00 2.69 0.00 21 ER4a ExonRegion 0 1.16 2.74 3.96 1.64 4.36 4.03 9.03 6.20 4.49 3.59 1.64 6.73 1.41 0.39 2.47 6.42 4.52 2.28 1.72 4.62 2.38 2.77 2.38 22 E4_Da NovelBoundary 0 3.78 10.00 6.48 6.23 0.00 8.46 24.60 3.37 4.89 8.89 2.16 6.30 0.00 2.30 0.00 0.00 8.32 2.32 0.00 8.56 5.62 2.88 4.35 23 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER5a ExonRegion 0 10.12 13.51 27.00 20.60 19.91 29.06 31.41 26.27 21.65 26.21 29.35 19.23 26.70 33.01 20.04 29.10 60.43 20.78 12.06 38.39 14.02 26.09 14.86 25 E5a_E6a KnownJunction 0 10.15 8.62 49.67 29.90 32.60 10.45 36.74 35.82 21.44 28.12 27.01 12.60 8.28 28.78 9.27 57.76 24.87 18.65 17.22 35.15 2.90 33.37 11.61 26 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER6a ExonRegion 0 23.81 32.67 41.73 35.05 57.31 63.03 76.81 35.75 40.14 53.51 54.77 52.51 77.88 50.14 38.72 52.94 90.85 41.73 29.57 66.89 17.51 44.02 33.51 28 E6a_E7a KnownJunction 0 33.49 37.49 35.89 33.06 49.83 34.41 30.60 21.85 59.84 49.21 66.23 50.42 90.42 53.15 43.76 68.87 89.01 32.33 18.26 78.49 30.77 53.95 74.86 29 E6a_E7b NovelJunction 0 3.78 18.62 11.18 9.72 3.48 2.90 8.35 2.05 5.61 12.36 17.27 12.60 0.00 7.30 5.19 11.96 17.02 3.98 4.80 6.52 0.00 5.33 0.00 30 ER7a ExonRegion 0 30.58 23.78 29.73 25.42 36.26 40.34 43.50 17.78 52.35 58.98 43.47 75.63 78.68 50.51 56.78 59.62 92.96 33.71 26.00 73.30 22.17 39.37 35.72 31 E7_Ab KnownBoundary 0 43.27 23.35 23.36 26.74 75.72 58.26 72.38 18.85 46.79 64.74 47.80 64.97 70.77 47.03 90.86 46.23 82.75 30.14 25.88 59.25 20.45 38.52 23.47 32 ER7b ExonRegion 0 44.39 41.15 27.01 34.63 75.69 130.90 105.79 22.59 42.76 62.53 59.05 82.26 134.73 48.41 33.23 42.99 82.43 39.56 31.55 69.08 27.41 53.54 15.65 33 E7a_E8a KnownJunction 0 26.82 36.77 22.12 24.77 35.23 87.28 57.10 17.42 37.27 57.59 29.22 36.61 20.13 12.30 16.56 30.93 49.28 26.53 12.89 35.92 28.54 21.13 7.43 34 ER8a ExonRegion 0 28.35 57.97 37.08 28.25 37.32 60.73 76.81 30.54 38.04 68.81 59.72 121.78 92.44 50.71 44.21 42.91 78.85 37.35 23.93 71.10 31.85 48.74 36.12 35 E8a_E9a KnownJunction 0 36.45 62.29 39.47 46.48 63.16 17.38 27.91 36.43 27.89 64.55 47.12 93.48 96.26 25.25 45.61 46.91 47.50 32.04 22.68 38.35 30.02 55.05 19.63 36 ER9a ExonRegion 0 22.41 34.10 35.98 33.53 16.81 32.11 38.99 31.13 24.64 62.20 31.99 62.17 54.36 22.57 19.75 21.72 43.80 38.71 19.23 38.60 14.44 33.60 8.89 37 E9a_E10a KnownJunction 1 30.38 32.43 58.13 37.79 31.66 64.51 82.36 39.35 34.03 75.99 62.91 48.02 47.07 14.13 10.75 26.92 91.16 40.21 20.89 53.50 25.70 29.70 15.79 38 ER10a ExonRegion 0 33.82 44.60 52.45 30.39 68.37 93.31 83.29 46.69 30.84 82.81 53.43 138.34 96.71 62.65 49.62 53.60 81.84 35.17 24.13 48.79 28.17 45.36 33.75 39 E10_Da NovelBoundary 1 10.37 8.75 14.04 19.98 7.81 9.71 36.30 14.54 5.27 9.51 9.53 62.87 46.59 16.95 4.45 8.12 0.00 8.83 3.48 20.13 0.00 14.08 0.00 40 E10a_E11a KnownJunction 1 38.45 50.45 36.04 29.37 56.37 90.12 115.71 25.67 36.83 67.40 28.38 125.89 75.48 44.15 35.85 55.63 79.85 37.76 18.07 36.05 38.80 52.60 55.14 41 I10 Intron 0 2.87 4.79 3.59 4.71 6.69 5.43 10.35 5.61 6.11 7.20 5.25 19.45 16.93 11.35 7.30 7.54 8.25 4.11 1.59 9.04 2.20 11.38 4.30 42 I10_AR1 ActiveIntronRegion 0 2.92 5.00 3.74 4.91 6.87 5.53 10.45 5.85 6.37 7.51 5.25 20.00 17.21 11.78 7.30 7.86 8.36 4.28 1.66 9.27 2.30 11.71 4.37 43 E11_Aa NovelBoundary 0 24.00 3.35 8.87 18.08 52.55 11.02 46.68 29.53 18.92 17.86 10.06 7.35 15.10 12.66 21.63 34.26 18.79 8.50 4.80 15.40 18.35 11.88 8.71 44 ER11a ExonRegion 0 36.74 40.18 38.18 28.92 32.38 58.80 67.10 21.58 31.40 57.21 34.84 61.11 58.99 28.86 30.17 33.34 79.01 39.73 17.72 42.03 30.99 34.57 40.62 45 E11_Da NovelBoundary 0 16.30 15.26 17.27 10.02 8.40 23.79 3.93 14.75 12.59 18.27 9.37 31.66 46.75 15.07 8.90 22.13 17.30 10.32 7.72 15.66 8.34 3.12 15.54 46 E11a_E12a KnownJunction 0 56.16 43.22 34.74 27.37 35.65 68.31 58.16 23.41 23.99 35.83 32.27 26.11 12.82 7.36 13.35 39.39 60.31 34.41 14.21 17.71 32.19 5.02 15.96 47 E11a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 I11 Intron 0 3.25 3.75 1.68 1.25 1.64 4.51 9.76 2.37 2.26 4.20 4.16 2.66 6.02 6.87 4.30 6.39 14.20 6.22 1.96 5.23 9.44 7.68 4.51 49 I11_AR1 ActiveIntronRegion 0 6.52 1.22 1.91 1.34 4.28 6.75 3.89 1.76 3.41 3.90 1.20 1.21 1.03 3.93 4.18 7.19 16.24 8.24 0.00 2.94 7.62 6.96 2.70 50 I11_SR1 SilentIntronRegion 0 1.89 4.97 1.63 1.24 0.52 3.60 12.62 2.71 1.81 4.45 5.58 3.37 8.38 8.29 4.47 6.21 13.61 5.49 2.88 6.38 10.49 8.21 5.43 51 E12_Aa NovelBoundary 0 39.64 12.83 11.09 9.56 36.50 13.29 32.50 13.76 10.71 13.48 5.26 0.00 31.65 16.72 4.45 26.06 25.81 19.65 8.94 18.02 15.69 0.00 12.89 52 ER12a ExonRegion 0 26.44 56.13 35.82 21.23 28.77 45.22 39.61 30.26 36.02 45.06 32.09 69.98 27.56 43.58 37.24 63.03 67.69 47.76 30.11 42.06 45.16 17.30 26.31 53 E12_Ab KnownBoundary 0 35.12 110.64 38.41 24.17 43.72 71.44 99.28 34.54 43.89 68.34 59.65 68.72 62.01 75.93 38.45 51.52 112.48 44.19 30.87 51.90 76.11 31.96 49.08 54 ER12b ExonRegion 0 28.04 56.62 34.47 26.92 51.90 99.13 103.07 29.57 49.76 56.94 47.27 53.06 37.75 55.90 57.81 58.53 80.29 48.35 16.32 54.44 38.12 27.64 35.53 55 E12a_E13a KnownJunction 0 38.23 42.43 51.03 31.56 82.34 98.41 87.93 33.39 57.64 50.82 49.75 56.57 34.09 57.63 79.98 76.90 72.56 63.55 19.11 65.58 39.04 15.49 20.32 56 ER13a ExonRegion 0 36.27 44.91 39.29 36.31 54.62 71.80 61.95 44.67 59.86 70.63 60.33 90.86 79.70 60.75 89.24 80.82 85.07 40.38 27.11 72.91 35.08 43.90 36.68 57 E13_Da NovelBoundary 0 36.90 17.96 8.49 18.01 15.28 21.01 24.47 4.07 17.48 13.24 9.53 12.60 33.76 7.36 13.35 11.28 17.11 3.73 4.80 21.03 0.00 13.84 7.68 58 E13a_E14a KnownJunction 0 55.71 69.33 29.18 23.77 32.60 59.68 62.84 20.13 34.58 37.39 32.27 86.73 84.41 35.61 67.00 22.47 41.51 17.82 12.89 45.06 25.21 7.90 15.62 59 I13 Intron 0 5.37 13.77 3.46 7.82 8.76 11.07 14.41 5.87 7.50 6.42 5.27 13.18 19.47 7.47 5.54 9.83 10.17 7.44 2.45 12.84 5.23 11.10 5.56 60 I13_AR1 ActiveIntronRegion 0 1.81 4.41 1.51 1.33 6.86 5.77 10.73 0.00 3.01 3.08 1.77 17.68 11.24 1.93 10.15 2.54 9.35 0.15 4.05 21.76 0.28 9.42 7.34 61 I13_SR1 SilentIntronRegion 0 5.64 6.60 5.51 9.80 13.15 12.74 17.14 5.59 9.27 7.57 6.84 12.67 20.79 11.80 3.85 12.19 9.14 9.32 4.23 17.22 5.42 16.08 7.48 62 I13_AR2 ActiveIntronRegion 0 7.58 15.54 3.56 9.65 7.32 13.93 17.21 6.73 7.36 5.82 8.84 13.87 19.53 9.87 4.99 12.16 16.85 13.52 2.73 18.78 10.49 12.95 9.91 63 I13_SR2 SilentIntronRegion 0 3.80 16.11 2.66 6.04 8.18 8.54 11.37 5.74 7.20 6.64 2.11 12.61 19.49 4.18 6.39 7.55 5.52 2.46 1.39 5.82 1.44 7.72 1.28 64 E14_Aa NovelBoundary 0 23.26 12.50 6.09 9.52 31.66 24.08 19.17 10.51 11.28 11.93 4.69 10.80 12.66 4.59 8.90 0.00 0.00 4.06 7.53 13.87 0.00 8.14 7.68 65 ER14a ExonRegion 0 47.51 103.11 41.51 55.85 86.54 103.44 102.85 41.92 44.85 64.69 48.60 91.41 75.51 41.20 70.98 55.44 59.74 27.22 13.46 49.62 17.92 39.08 24.96 66 E14_Da KnownBoundary 0 41.19 66.17 28.09 59.07 61.21 60.93 71.37 36.35 27.40 52.49 36.48 57.17 32.79 53.03 47.47 54.00 34.97 14.88 8.85 23.14 5.19 54.68 6.91 67 ER14b ExonRegion 0 17.91 37.43 19.21 27.12 43.87 61.83 60.52 30.62 25.88 42.13 15.45 52.32 35.15 25.95 34.05 15.73 24.38 12.49 7.08 32.73 4.52 27.25 10.97 68 IG4 Intergenic 0 5.93 29.74 13.00 22.36 25.93 37.95 36.31 11.22 17.18 17.22 4.59 14.07 8.00 8.25 6.82 11.56 15.41 24.35 11.90 26.99 5.40 9.56 9.82 69 IG4_AR1 ActiveIntergenicRegion 0 4.89 30.23 9.23 20.17 24.01 36.08 31.53 9.05 12.87 17.69 6.44 25.28 11.12 7.14 7.15 10.14 14.25 12.51 7.25 24.35 3.56 8.78 7.76 70 IG4_AR2 ActiveIntergenicRegion 0 5.80 44.57 19.29 29.92 36.71 45.08 63.05 10.60 24.61 22.21 7.94 13.99 5.94 8.65 6.21 15.51 23.15 37.40 19.79 32.17 4.19 11.35 16.20 71 IG4_AR3 ActiveIntergenicRegion 0 6.77 61.01 21.93 35.84 35.86 54.10 72.16 9.33 37.67 23.86 9.66 25.11 4.69 9.74 26.98 16.64 34.33 53.58 31.85 49.79 8.15 19.59 17.03 72 IG4_AR4 ActiveIntergenicRegion 0 4.94 56.49 22.06 31.65 36.57 51.75 53.84 9.03 35.54 24.59 7.30 8.18 9.90 9.20 23.53 16.18 33.74 43.32 28.67 46.57 7.10 16.90 20.56 73 IG4_SR1 SilentIntergenicRegion 0 4.30 26.64 11.28 21.97 23.15 33.42 32.47 11.68 17.96 12.60 2.17 8.77 7.44 7.46 6.19 10.75 11.83 25.56 13.53 24.06 4.29 10.60 8.82 74 IG4_AR5 ActiveIntergenicRegion 0 9.49 23.85 15.98 20.90 25.89 41.96 31.70 13.72 16.18 20.03 3.69 7.89 6.25 10.39 6.41 12.04 16.50 28.44 9.88 30.17 9.63 7.62 9.79