Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SAMD3 Gene 0 83.61 1.04 0.69 5.69 35.52 5.76 9.57 13.16 12.08 1.40 20.51 1.23 1.86 1.32 2.94 0.66 1.92 0.06 0.44 0.40 4.70 4.70 4.67 2 368134 Transcript 0 1.71 0.37 0.00 0.00 1.62 0.00 0.32 0.29 0.62 0.05 2.80 0.98 3.71 0.65 1.63 0.36 0.60 0.11 0.58 0.26 2.41 1.46 3.89 3 392430 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 296977 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 439090 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 457563 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 324172 Transcript 0 16.92 3.02 0.00 0.33 5.67 3.72 5.23 2.48 2.42 0.28 2.86 0.59 2.10 0.52 3.77 3.60 0.96 0.00 2.39 3.01 4.22 0.30 2.74 8 437477 Transcript 0 8.47 0.00 0.00 0.00 0.89 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 9 463253 Transcript 0 11.35 0.00 0.00 0.37 3.77 0.67 1.08 1.18 0.90 0.16 0.88 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.10 0.09 0.40 10 IG46 Intergenic 0 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.32 0.30 8.53 0.00 0.00 1.23 1.08 0.00 2.91 0.00 0.00 0.00 10.50 2.21 6.22 11 IG46_AR1 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.33 0.30 8.58 0.00 0.00 1.24 1.09 0.00 2.93 0.00 0.00 0.00 10.57 2.22 6.26 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.33 0.31 6.86 1.94 0.00 0.97 3.04 0.00 2.40 0.00 0.00 0.00 4.68 4.16 5.02 13 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 4.35 14 ER2a ExonRegion 0 16.57 0.00 0.00 0.73 13.11 5.18 0.95 0.00 3.57 0.00 0.01 2.56 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.02 15 E2_Ab KnownBoundary 0 3.11 0.00 0.00 0.00 4.24 9.31 0.00 0.00 6.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 16 ER2b ExonRegion 0 1.83 0.00 0.00 0.66 1.33 3.25 0.00 1.10 5.23 0.37 1.79 0.00 1.62 0.57 1.66 0.00 1.41 0.00 0.00 0.00 5.11 3.62 7.18 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.56 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.82 7.60 18 E2a_E4a KnownJunction 0 0.00 0.00 0.00 1.63 3.90 0.00 0.00 0.00 3.21 1.67 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 5.82 3.76 19 ER3a ExonRegion 0 4.23 2.19 0.00 0.00 5.39 0.00 1.94 0.00 1.82 0.00 2.18 3.92 22.27 2.96 6.76 2.14 1.21 0.66 3.48 1.56 3.82 1.75 2.85 20 E3a_E4a KnownJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 21 ER4a ExonRegion 0 1.79 0.00 0.00 0.53 3.49 10.48 0.00 0.00 4.91 0.95 6.60 0.00 0.00 0.00 0.25 0.00 3.44 0.00 0.00 0.00 3.35 4.39 6.83 22 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 4.24 17.66 0.00 0.00 3.36 0.00 2.42 0.00 0.00 0.00 0.00 0.00 9.54 0.00 0.00 0.00 6.12 5.45 3.16 23 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 I5 Intron 0 24.91 0.00 0.00 0.46 14.10 2.06 7.27 3.18 2.68 0.57 9.75 0.00 0.43 0.73 0.00 0.00 1.48 0.00 0.00 0.00 0.24 0.70 1.32 26 I5_AR1 ActiveIntronRegion 0 24.96 0.00 0.00 0.46 14.13 2.06 7.29 3.18 2.69 0.58 9.77 0.00 0.43 0.73 0.00 0.00 1.48 0.00 0.00 0.00 0.24 0.70 1.32 27 E6_Aa NovelBoundary 0 20.15 0.00 0.00 3.30 24.79 20.05 2.25 5.71 3.76 0.00 12.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 28 E6_Ab NovelBoundary 0 10.15 0.00 0.00 0.00 14.60 2.78 0.00 2.55 0.00 0.00 12.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 29 ER6a ExonRegion 0 2.12 0.00 0.00 0.00 12.84 12.84 0.26 0.00 3.71 0.00 22.04 0.00 0.00 0.00 0.00 0.00 9.90 0.00 0.00 0.00 6.17 6.25 2.94 30 ER6b ExonRegion 0 48.52 0.00 0.00 2.74 16.31 9.15 5.10 10.99 14.03 1.41 48.04 0.00 2.07 1.49 1.80 0.00 3.13 0.00 0.00 0.00 6.56 4.25 4.92 31 E6a_E7a KnownJunction 0 152.10 0.00 0.00 8.72 43.80 15.79 16.03 30.85 28.47 2.61 60.54 0.00 0.00 9.54 4.45 0.00 0.00 0.00 0.00 0.00 2.90 3.00 10.16 32 ER7a ExonRegion 0 67.86 1.09 0.00 6.66 40.08 6.82 14.42 23.53 16.05 2.05 42.30 0.00 0.00 2.25 2.86 0.00 3.54 0.00 0.00 0.00 4.81 5.09 7.26 33 E7a_E8a KnownJunction 0 81.42 0.00 0.00 7.19 45.33 0.00 3.53 22.39 12.76 0.00 46.54 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.47 3.12 10.33 34 ER8a ExonRegion 0 53.36 0.00 0.00 5.79 28.17 6.14 9.34 19.50 14.01 3.01 39.78 0.00 0.00 2.22 2.88 0.00 1.94 0.00 0.00 0.00 7.35 4.42 9.66 35 E8_Da NovelBoundary 0 2.82 0.00 0.00 1.27 4.07 0.00 0.00 3.90 3.01 0.00 9.42 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E8a_E9a KnownJunction 0 61.12 0.00 0.00 8.09 48.05 5.22 12.72 12.03 6.51 0.00 43.22 0.00 0.00 2.30 0.00 0.00 4.39 0.00 0.00 0.00 6.12 2.33 12.63 37 E8a_E9b KnownJunction 0 10.74 0.00 0.00 0.00 23.94 5.39 1.99 1.81 4.60 1.02 9.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 I8 Intron 0 19.81 0.06 0.02 1.75 8.26 1.23 3.79 3.63 3.50 0.47 3.07 0.13 0.25 0.24 0.27 0.00 0.55 0.00 0.00 0.03 0.98 0.90 1.93 39 I8_SR2 SilentIntronRegion 0 27.48 0.08 0.00 2.42 14.11 2.57 4.72 3.97 4.71 0.70 4.63 0.25 0.43 0.20 0.31 0.00 0.72 0.00 0.00 0.00 0.97 1.99 1.76 40 I8_AR2 ActiveIntronRegion 0 66.33 0.00 0.00 2.18 15.12 2.29 5.15 5.84 5.47 1.49 5.87 0.00 0.00 0.19 0.00 0.00 0.48 0.00 0.00 0.00 0.64 1.52 2.13 41 I8_SR3 SilentIntronRegion 0 43.36 0.00 0.00 4.47 24.15 3.26 7.07 5.87 4.16 0.59 6.92 0.00 0.71 0.41 0.18 0.00 0.61 0.00 0.00 0.26 0.27 2.72 1.44 42 I8_AR3 ActiveIntronRegion 0 68.25 0.00 0.00 5.67 29.46 1.58 5.79 7.12 5.35 0.79 4.05 1.53 0.00 0.72 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.93 1.26 43 E9_Aa NovelBoundary 0 65.12 0.00 0.00 6.99 15.96 0.00 15.19 2.05 5.70 1.37 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 44 E9_Ab NovelBoundary 0 42.08 0.00 0.00 3.40 32.26 5.34 5.52 11.62 4.72 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 45 ER9a ExonRegion 0 68.79 0.00 0.00 7.84 56.86 4.58 20.52 19.01 14.82 1.43 52.67 0.00 0.00 1.62 0.73 0.00 3.30 0.00 0.00 0.00 6.61 4.17 11.75 46 ER9b ExonRegion 0 96.06 0.57 0.77 12.38 65.07 7.36 18.08 28.66 24.90 2.77 54.49 0.00 1.31 1.76 4.35 0.00 1.49 0.00 0.00 0.00 8.02 5.19 5.74 47 E9_Da NovelBoundary 0 3.33 0.00 0.00 0.00 7.39 0.00 8.57 9.04 4.63 0.00 4.95 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.19 0.00 48 E9a_E10a KnownJunction 0 155.43 0.00 1.83 10.85 23.94 0.00 14.35 21.24 25.38 1.26 43.59 0.00 0.00 7.42 15.08 0.00 0.00 0.00 0.00 0.00 11.74 2.63 0.00 49 I9 Intron 0 20.29 0.00 0.00 2.90 8.19 1.50 3.51 5.25 3.00 0.35 0.79 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.70 3.00 50 I9_SR1 SilentIntronRegion 0 20.46 0.00 0.00 2.92 8.25 1.51 3.54 5.30 3.03 0.35 0.79 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 1.36 1.71 3.02 51 E10_Aa NovelBoundary 0 63.12 0.00 0.00 5.26 3.99 0.00 1.68 12.32 7.29 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 52 ER10a ExonRegion 0 155.95 0.00 1.64 14.83 45.71 2.07 15.69 27.15 18.89 2.31 35.91 0.00 0.00 1.72 2.39 0.00 2.68 0.00 0.00 0.00 11.74 4.78 3.59 53 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E10a_E12a KnownJunction 0 244.34 0.00 0.00 17.68 76.06 7.61 14.62 29.78 18.75 2.93 14.27 0.00 0.00 0.00 4.45 0.00 4.58 0.00 0.00 0.00 5.75 10.53 0.00 55 E11_Aa NovelBoundary 0 11.26 10.13 13.54 17.75 8.49 5.22 19.17 18.57 29.28 17.35 0.00 0.00 6.33 0.00 0.00 4.19 4.77 26.70 9.32 6.46 9.33 0.00 4.18 56 ER11a ExonRegion 0 3.70 8.30 0.00 0.11 1.34 5.35 5.63 1.58 0.00 0.00 0.00 0.00 11.33 2.57 4.84 8.17 3.30 0.00 6.11 3.72 3.31 1.04 4.16 57 ER11b ExonRegion 0 16.92 3.02 0.00 0.33 5.67 3.72 5.23 2.48 2.42 0.28 2.86 0.59 2.10 0.52 3.77 3.60 0.96 0.00 2.39 3.01 4.22 0.30 2.74 58 E11_Db NovelBoundary 0 56.16 0.00 0.00 0.00 24.36 0.00 4.02 7.35 3.53 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER12a ExonRegion 0 234.76 0.00 0.86 10.81 93.80 13.57 25.03 21.75 17.13 2.77 30.25 2.04 4.00 1.89 4.00 0.00 2.57 0.00 0.00 0.00 6.35 8.57 1.98 60 E12_Ab KnownBoundary 0 233.37 0.00 0.00 12.75 90.66 8.69 6.09 16.59 15.65 5.53 24.06 0.00 0.00 0.00 8.90 0.00 0.00 0.00 0.00 0.00 15.69 8.08 8.02 61 ER12b ExonRegion 0 198.35 1.08 0.00 6.84 57.75 13.97 11.34 18.35 19.21 3.63 30.48 0.00 0.08 0.00 2.80 0.00 7.48 0.00 0.00 0.00 4.70 15.21 1.86 62 E12_Da KnownBoundary 0 14.15 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E12a_E13a KnownJunction 0 139.95 3.29 0.00 3.36 66.30 9.82 6.23 18.85 27.05 1.05 30.22 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 9.00 3.41 64 ER12c ExonRegion 0 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER13a ExonRegion 0 171.24 0.19 0.00 8.79 75.12 6.93 17.03 15.52 22.23 4.00 35.10 0.00 0.98 1.70 2.37 1.51 5.91 0.00 0.00 0.00 4.12 9.19 4.87 66 E13a_E14b KnownJunction 0 183.37 0.00 0.00 9.92 59.25 12.44 13.87 28.05 18.37 4.14 25.37 0.00 0.00 0.00 0.00 0.00 4.21 0.00 0.00 0.00 3.15 2.76 4.35 67 ER14a ExonRegion 0 22.70 0.00 0.00 0.74 7.54 1.33 2.17 2.36 1.80 0.31 1.76 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.20 0.19 0.80 68 ER14b ExonRegion 0 242.35 2.30 0.50 8.83 80.10 16.32 14.73 19.85 17.71 2.07 27.39 1.27 0.00 1.60 3.87 0.00 1.24 0.00 0.00 0.00 2.72 7.09 8.26 69 E14a_E15a KnownJunction 0 364.81 2.76 1.09 18.78 133.02 12.21 14.22 14.38 22.77 1.42 14.90 5.85 0.00 0.00 8.90 0.00 0.00 0.00 0.00 0.00 5.62 2.39 16.05 70 E14a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER15a ExonRegion 0 135.46 0.27 0.77 10.11 80.76 9.04 31.76 18.06 19.30 1.16 30.58 3.03 0.00 1.04 7.27 0.00 0.00 0.00 0.00 0.00 7.59 7.83 8.10 72 E15a_E16a KnownJunction 0 167.66 0.00 3.19 9.66 87.27 13.97 38.91 21.69 26.97 1.64 26.80 6.30 0.00 2.47 4.45 0.00 0.00 0.00 0.00 0.00 14.21 10.96 3.50 73 ER16a ExonRegion 0 138.92 3.60 2.83 16.12 60.26 13.41 17.08 16.64 27.08 2.84 24.46 3.40 0.00 2.59 4.60 0.00 1.39 0.00 0.00 0.00 8.76 5.46 8.81 74 E16_Da KnownBoundary 0 227.15 7.83 3.78 13.85 76.06 5.62 15.02 25.06 32.29 2.66 27.43 12.45 0.00 7.30 10.75 0.00 0.00 0.00 0.00 0.00 14.33 7.23 3.24 75 ER16b ExonRegion 0 121.37 1.35 3.21 8.92 44.62 2.83 9.27 24.90 16.26 0.63 13.00 2.55 1.07 1.32 1.62 0.41 0.46 0.26 0.00 0.00 2.84 6.47 3.33 76 ER16c ExonRegion 0 8.47 0.00 0.00 0.00 0.89 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00