Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNF217 Gene 0 11.31 21.55 6.87 7.59 4.24 3.38 2.60 4.27 5.31 6.47 31.13 6.37 16.01 2.67 7.84 14.69 111.34 1.67 3.69 53.25 32.78 54.16 32.23 2 359704 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 432968 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 432158 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 368415 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 368414 Transcript 0 2.67 6.65 2.39 2.19 1.62 1.32 1.30 0.54 2.01 2.12 6.41 1.83 6.56 0.30 2.33 2.05 18.47 0.14 0.90 15.70 4.02 17.82 8.17 7 275184 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 4.21 10.72 1.21 3.36 0.89 0.00 0.00 0.00 0.00 2.26 3.20 2.36 2.83 0.00 0.00 0.98 10.93 0.61 3.16 5.64 0.00 1.38 1.95 9 E1_Da NovelBoundary 0 11.11 10.79 5.68 4.00 3.90 0.00 0.00 0.00 0.00 7.44 5.00 11.85 0.00 0.00 4.45 0.00 17.20 1.82 0.00 12.27 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 2.66 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 3.65 2.03 0.00 0.00 0.00 0.00 2.08 0.00 0.00 5.36 1.39 0.00 0.00 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E4b NovelJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 0.00 2.84 9.12 0.00 14 I2_AR3 ActiveIntronRegion 0 1.04 2.97 3.29 0.50 0.66 0.00 1.63 0.00 0.00 2.33 7.83 2.13 0.95 0.00 0.77 1.49 16.78 0.00 3.14 8.17 0.62 0.00 1.01 15 ER3a ExonRegion 0 0.00 0.00 0.00 1.33 1.25 0.05 0.00 0.00 0.00 0.00 0.04 0.16 0.00 0.00 0.96 0.00 4.54 0.00 0.00 0.94 0.51 0.97 0.40 16 E3a_E4b KnownJunction 0 0.00 0.00 0.00 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.44 0.00 0.00 0.00 3.15 0.00 3.93 17 ER4a ExonRegion 0 2.42 4.65 0.00 0.58 0.76 0.00 0.00 0.00 0.35 0.00 0.83 0.00 0.00 0.00 0.00 0.00 16.50 0.00 0.00 3.95 2.20 8.63 5.03 18 ER4b ExonRegion 1 5.57 15.30 1.11 7.36 4.39 0.00 0.22 1.39 3.56 2.28 37.04 4.38 17.49 3.11 5.58 8.95 178.71 1.23 0.52 46.51 52.19 40.81 32.94 19 E4_Ac KnownBoundary 0 2.82 22.63 4.11 14.75 0.00 0.00 1.99 0.00 6.45 5.21 41.06 0.00 13.31 2.47 0.00 31.44 136.42 2.16 0.00 78.17 74.81 46.97 48.66 20 ER4c ExonRegion 0 8.11 19.48 6.74 9.21 4.61 3.98 2.24 1.23 5.16 2.05 54.00 6.02 14.44 2.34 10.45 19.90 185.34 4.68 7.75 67.47 56.34 67.56 59.52 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 5.93 2.76 7.17 22 E4a_E7a KnownJunction 0 6.59 25.78 2.48 13.05 7.98 0.00 0.00 2.18 2.66 1.40 28.22 12.60 28.57 4.94 23.24 12.65 112.67 4.77 0.00 68.90 59.12 60.68 27.15 23 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.56 2.08 4.27 24 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 25 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.19 0.00 4.15 0.00 1.71 0.00 4.27 0.00 0.00 2.34 0.00 0.34 0.00 26 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 8.13 1.58 0.00 2.94 0.00 0.00 0.00 27 ER6b ExonRegion 0 0.00 0.00 0.00 0.00 0.06 0.00 0.11 0.00 0.00 0.00 0.49 0.00 2.99 0.00 0.00 0.00 2.11 0.00 0.00 1.58 0.09 0.00 0.00 28 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER7a ExonRegion 0 11.74 20.52 7.74 8.24 4.74 2.55 2.00 3.35 7.09 4.96 48.74 6.87 22.23 3.48 14.56 22.82 169.53 2.27 5.89 81.57 72.67 68.67 47.27 30 E7a_E8a KnownJunction 0 16.67 24.21 9.79 7.42 7.47 18.63 3.93 7.23 4.83 5.67 27.27 6.30 7.30 7.36 9.27 15.64 159.70 4.15 4.61 87.63 68.57 78.44 45.33 31 ER8a ExonRegion 0 14.67 32.78 9.47 7.79 5.06 5.90 3.44 6.83 10.44 8.54 46.55 9.84 14.51 4.70 9.46 18.86 161.06 1.89 3.22 82.47 48.44 66.43 43.51 32 E8a_E9a KnownJunction 0 17.11 32.76 6.24 8.56 0.00 12.61 1.72 0.00 3.07 4.59 36.43 6.00 13.64 2.47 4.45 6.58 126.32 4.64 0.00 56.63 19.77 57.80 34.83 33 I8_AR2 ActiveIntronRegion 0 9.80 4.88 0.63 0.62 0.00 0.00 0.00 0.00 0.00 0.00 5.03 0.00 0.00 1.62 0.00 3.99 25.37 0.00 0.00 12.16 10.20 6.37 7.38 34 ER9a ExonRegion 0 17.20 41.10 5.68 9.92 3.08 7.74 1.42 3.24 4.01 6.59 28.54 18.82 13.16 5.86 5.36 14.70 138.68 1.51 4.56 63.00 25.83 63.20 40.22 35 E9a_E10a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 13.84 0.00 0.00 2.68 0.00 2.39 0.00 36 E9a_E11a KnownJunction 0 12.82 27.76 6.42 9.46 8.49 5.56 2.25 4.93 4.75 5.24 39.75 5.85 0.00 2.47 4.82 12.56 113.79 0.00 9.51 73.25 14.58 40.66 24.07 37 ER10a ExonRegion 0 2.82 2.23 0.00 0.00 0.00 0.00 0.00 4.04 0.00 0.00 2.55 0.00 0.73 0.00 1.84 2.64 11.05 0.00 0.00 3.57 7.47 11.56 2.60 38 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 9.35 0.00 0.00 0.00 2.78 13.96 0.00 39 ER11a ExonRegion 0 20.01 31.35 11.64 12.10 6.32 4.80 4.58 8.81 7.95 12.08 47.73 8.70 25.29 4.43 11.83 26.16 162.33 2.70 5.27 75.92 47.22 85.88 49.09 40 E11_Da KnownBoundary 0 0.00 18.81 8.49 7.06 0.00 0.00 0.00 0.00 5.06 13.59 16.16 0.00 8.28 0.00 5.44 4.19 53.48 0.00 4.33 34.71 5.56 29.94 4.35 41 E11_Db KnownBoundary 0 7.56 17.89 1.83 1.47 6.79 7.33 2.25 6.37 5.35 7.52 11.53 0.00 22.89 2.65 13.97 4.36 34.22 0.00 4.61 44.42 5.50 55.66 7.85 42 ER11b ExonRegion 1 4.23 30.96 7.35 7.57 8.03 5.50 2.21 5.19 10.70 17.97 23.84 0.48 38.04 4.87 18.05 5.94 70.79 0.00 8.49 63.59 9.55 66.90 15.66 43 ER11c ExonRegion 0 13.34 33.25 11.93 10.96 8.11 6.59 5.47 2.71 7.81 10.60 21.64 9.13 28.67 1.52 9.95 10.26 88.07 0.69 4.52 73.35 13.59 81.42 29.41 44 IG49_AR1 ActiveIntergenicRegion 0 0.82 5.54 0.00 3.10 1.34 0.00 0.00 0.00 3.36 2.29 5.05 1.20 2.87 2.53 3.38 0.00 15.59 1.54 0.00 8.87 2.57 8.10 2.28 45 IG49_SR1 SilentIntergenicRegion 0 9.38 51.26 3.38 8.25 6.92 2.65 1.85 1.72 7.59 5.27 28.28 12.71 23.02 2.91 8.28 3.23 64.14 0.45 3.26 53.56 14.33 61.69 18.09 46 IG49_AR2 ActiveIntergenicRegion 0 12.70 95.24 1.23 6.81 18.73 5.50 3.97 1.73 4.94 5.73 14.17 12.99 21.11 0.00 0.00 5.94 34.11 0.00 0.00 29.43 2.94 45.14 8.32 47 IG49_SR2 SilentIntergenicRegion 0 10.72 102.56 1.23 4.68 16.23 1.83 1.90 1.73 6.75 5.35 8.76 11.40 6.88 0.00 5.80 2.38 24.32 0.00 0.00 39.57 2.20 42.57 4.21 48 IG49_AR3 ActiveIntergenicRegion 0 10.48 34.63 8.52 9.63 5.20 1.79 2.83 4.07 6.58 6.03 11.67 9.01 9.35 1.13 6.68 2.99 29.45 0.38 2.00 38.94 3.74 54.20 12.31 49 IG49_SR3 SilentIntergenicRegion 0 1.73 22.63 1.10 1.83 1.01 0.59 0.73 2.26 2.64 4.98 8.13 2.32 4.39 0.57 0.83 3.57 30.93 0.34 0.88 35.54 8.86 34.20 16.02 50 IG49_AR4 ActiveIntergenicRegion 0 2.42 19.80 0.56 3.20 1.03 0.56 2.15 2.88 2.24 4.84 2.76 5.58 6.20 0.41 0.33 2.12 8.47 0.28 1.94 21.03 2.01 51.90 8.63 51 IG49_SR4 SilentIntergenicRegion 0 4.02 9.96 0.00 1.92 0.00 0.00 0.08 3.39 1.76 2.20 11.76 4.77 3.83 0.00 2.13 2.00 4.92 0.00 2.02 9.03 9.31 15.14 10.13 52 IG49_AR5 ActiveIntergenicRegion 0 6.91 64.11 2.40 6.36 4.89 1.49 3.35 2.73 2.58 6.88 8.47 4.75 6.66 0.80 1.83 3.20 23.47 0.54 2.46 34.00 8.09 37.27 16.29 53 IG49_SR5 SilentIntergenicRegion 0 5.50 75.37 4.99 7.48 4.43 0.91 2.14 7.39 4.63 7.27 2.13 2.40 6.98 0.44 2.71 1.39 4.79 0.00 1.94 20.75 0.56 35.35 8.69 54 IG49_AR6 ActiveIntergenicRegion 0 22.92 77.50 14.38 16.90 9.63 2.65 5.14 7.71 4.49 10.67 6.68 2.03 3.20 0.57 7.18 1.95 12.37 0.27 2.57 24.64 2.16 40.11 9.06