Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 QRSL1 Gene 0 74.87 52.34 40.27 44.43 55.96 46.09 43.23 27.76 22.43 36.15 66.51 112.91 66.55 105.41 96.49 89.15 77.09 33.31 46.38 42.27 22.68 37.67 25.13 2 369046 Transcript 0 152.24 79.13 66.79 69.84 103.45 71.15 79.86 55.35 37.29 57.04 129.57 182.55 102.92 244.92 195.84 174.70 152.89 46.05 85.99 48.72 39.18 56.28 48.87 3 467262 Transcript 0 1.61 0.63 1.45 1.62 6.97 1.09 1.45 1.65 2.11 3.02 0.35 4.81 1.19 4.53 3.46 11.79 7.32 2.20 1.52 1.46 0.35 2.17 2.09 4 369044 Transcript 0 48.25 23.60 11.92 22.60 30.81 13.79 24.03 13.21 8.88 13.73 16.69 40.33 34.33 41.48 32.87 40.58 30.92 17.29 17.56 27.47 6.41 12.73 6.83 5 ER1a ExonRegion 1 4.91 11.28 1.84 2.11 2.80 8.75 6.98 1.34 1.63 4.59 17.40 0.00 0.00 58.17 24.00 34.31 19.21 14.70 30.98 7.16 7.51 7.86 9.08 6 E1_Ac KnownBoundary 1 115.13 106.49 10.29 10.85 52.55 134.75 70.53 8.05 9.84 18.19 77.97 5.25 6.01 250.52 70.21 232.42 116.50 57.12 128.85 52.22 32.31 79.30 63.17 7 ER1b ExonRegion 1 51.22 64.80 9.31 8.45 21.23 84.11 41.66 10.49 8.15 14.83 59.66 0.00 0.00 189.59 84.72 169.61 82.08 46.07 82.82 33.90 20.13 54.03 44.25 8 ER1c ExonRegion 1 54.91 92.96 19.38 13.22 56.98 102.47 70.90 21.82 18.28 29.62 64.40 15.61 9.59 114.26 87.20 157.95 120.72 74.28 68.85 33.83 31.14 37.11 28.59 9 E1a_E2a KnownJunction 0 2.96 0.00 0.00 0.00 6.28 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 2.41 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 10 E1a_E3a KnownJunction 0 29.49 41.24 9.34 6.13 21.14 40.03 35.55 21.89 21.90 27.05 23.16 11.85 31.17 36.14 45.61 34.61 62.27 39.96 25.13 13.74 23.97 19.78 8.71 11 E2_Aa NovelBoundary 0 0.00 0.00 3.02 3.16 4.24 0.00 10.29 1.56 1.24 4.00 0.00 12.45 0.00 7.95 4.45 7.78 19.92 3.48 0.00 3.00 2.72 3.12 12.63 12 ER2a ExonRegion 0 1.86 1.88 4.35 4.87 4.09 1.06 4.36 0.72 1.65 1.86 1.04 8.29 3.58 6.24 5.94 17.33 9.34 2.20 4.57 1.89 1.06 3.40 3.02 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 10.53 2.21 0.00 4.23 4.69 4.62 0.00 6.15 0.00 4.94 4.45 18.03 12.62 0.00 0.00 2.49 0.00 3.12 3.24 14 ER3a ExonRegion 0 20.05 28.29 40.80 34.24 31.34 17.93 23.24 35.61 37.88 51.88 109.76 117.60 64.52 138.77 126.98 139.43 143.84 52.82 69.86 56.85 29.19 59.02 34.38 15 E3a_E4a KnownJunction 0 37.64 62.29 59.40 56.47 86.84 48.38 69.69 41.73 42.94 60.90 106.87 234.98 109.90 134.26 192.97 141.76 154.37 71.42 63.44 52.54 5.62 89.95 32.95 16 ER4a ExonRegion 0 22.22 60.91 55.75 65.73 122.08 86.33 64.01 44.77 55.83 66.66 122.06 217.45 145.63 121.97 143.68 137.16 132.04 47.39 40.85 61.97 16.03 88.50 30.98 17 E4_Da KnownBoundary 0 9.63 84.66 67.62 91.50 194.91 183.42 158.81 55.49 64.81 82.09 126.40 176.46 99.83 120.90 175.17 132.10 117.16 39.05 37.55 86.74 22.67 96.81 28.26 18 ER4b ExonRegion 0 21.49 132.22 74.83 68.44 105.44 138.93 82.04 47.87 62.80 73.91 148.87 231.81 146.42 150.00 149.88 131.68 160.46 25.21 58.69 76.38 20.80 100.22 18.67 19 E4b_E5a KnownJunction 0 44.08 170.63 94.35 57.24 69.69 121.24 82.54 42.84 65.42 75.59 127.93 317.20 142.69 171.76 151.55 134.41 186.26 36.64 46.59 58.10 2.78 97.91 15.62 20 E5_Aa NovelBoundary 0 0.00 0.00 6.06 6.43 3.65 0.00 6.58 2.26 0.00 4.32 2.26 7.65 12.66 4.71 9.89 13.07 3.74 0.00 4.05 12.40 8.65 6.06 6.91 21 ER5a ExonRegion 1 63.84 123.38 66.45 58.46 65.54 66.28 55.12 56.75 56.74 75.02 139.01 429.11 118.85 185.48 142.79 146.00 181.65 34.35 44.96 70.23 20.22 91.31 27.79 22 E5a_E6a KnownJunction 1 65.57 97.68 86.19 88.17 93.97 56.84 71.81 57.30 67.53 83.30 168.67 482.11 102.59 286.78 217.57 238.06 213.09 54.76 94.78 65.13 43.31 95.65 29.96 23 ER6a ExonRegion 0 99.70 97.89 69.39 76.82 70.85 61.64 59.91 59.65 52.66 71.52 155.42 335.35 133.79 253.98 199.50 232.72 199.51 86.03 89.10 73.87 57.57 76.48 33.40 24 E6_Da NovelBoundary 0 3.33 17.30 2.51 5.36 0.00 5.17 18.24 0.00 1.16 7.87 9.63 12.60 12.99 6.95 9.89 40.93 12.81 4.81 8.09 6.14 2.41 0.00 3.59 25 E6a_E7a KnownJunction 1 95.05 138.73 73.42 84.60 91.77 70.53 49.29 38.16 31.45 71.02 99.13 299.05 79.70 300.43 241.80 235.66 116.41 78.47 155.02 30.04 72.34 39.68 38.58 26 E6a_E8a NovelJunction 0 43.04 0.00 0.00 3.13 6.79 0.00 3.53 0.00 1.79 0.00 0.00 0.00 0.00 3.00 0.00 0.00 4.77 6.47 0.00 3.26 0.00 0.00 0.00 27 ER7a ExonRegion 0 71.24 84.77 51.58 74.37 58.50 62.73 58.33 46.80 38.51 64.33 154.88 157.04 99.93 284.99 236.88 244.27 204.67 115.24 115.67 81.81 72.73 59.75 39.49 28 E7a_E8a KnownJunction 0 122.32 113.93 68.33 68.86 60.36 81.60 75.92 45.55 56.54 71.10 131.09 167.90 139.11 279.36 382.47 227.38 212.44 113.71 209.89 92.17 60.54 76.54 80.50 29 ER8a ExonRegion 0 128.52 86.48 58.69 61.64 82.44 76.17 66.28 57.01 45.50 72.82 156.01 114.62 107.63 281.00 212.49 221.58 188.46 91.42 116.16 68.27 63.93 67.71 50.45 30 E8_Da KnownBoundary 0 55.27 11.25 7.86 19.24 23.17 24.59 19.08 14.29 9.98 18.24 26.22 24.16 19.48 38.97 15.20 30.42 45.44 15.42 9.60 24.29 5.68 3.12 4.35 31 E8a_E9a KnownJunction 0 173.29 72.16 69.25 58.33 64.26 52.81 92.52 66.54 38.83 57.32 149.67 94.38 107.30 230.68 211.26 201.06 167.74 50.37 78.87 49.98 51.71 55.84 50.88 32 E8a_E10a NovelJunction 0 0.00 5.99 14.07 0.00 0.00 15.45 3.97 0.00 1.77 2.42 0.00 0.00 0.00 10.01 0.00 0.00 0.00 2.57 0.00 3.00 0.00 0.00 0.00 33 ER8b ExonRegion 0 48.25 23.60 11.92 22.60 30.81 13.79 24.03 13.21 8.88 13.73 16.69 40.33 34.33 41.48 32.87 40.58 30.92 17.29 17.56 27.47 6.41 12.73 6.83 34 E8_Db NovelBoundary 1 241.82 138.99 50.00 61.73 89.13 62.98 122.29 68.96 31.08 32.07 22.48 23.56 66.88 35.91 29.17 67.85 96.40 25.45 86.21 50.24 20.63 59.03 97.31 35 I8 Intron 0 30.10 12.85 9.71 17.22 10.38 11.86 8.56 5.55 3.70 9.82 5.55 20.31 25.37 20.83 23.41 22.20 14.70 7.41 9.61 11.31 0.95 7.18 1.69 36 I8_AR1 ActiveIntronRegion 0 36.60 15.63 11.80 20.93 12.62 14.42 10.41 6.75 4.50 11.94 6.75 24.06 30.84 23.99 27.39 26.99 17.87 9.00 11.68 13.75 1.15 8.73 2.05 37 E9_Aa NovelBoundary 1 132.76 39.99 4.91 36.09 31.75 24.87 30.52 11.38 9.78 26.08 6.69 57.32 67.37 57.98 42.28 24.61 9.54 6.30 16.85 23.01 8.59 10.72 0.00 38 ER9a ExonRegion 0 148.06 77.03 72.93 81.51 143.38 110.80 107.00 66.25 46.24 71.35 163.88 219.59 174.60 296.12 239.48 220.82 217.69 52.96 93.12 71.38 54.57 73.41 55.49 39 E9_Da NovelBoundary 1 37.19 15.33 11.62 15.92 31.07 43.27 9.45 11.54 5.76 8.57 12.16 31.06 55.35 17.01 13.35 16.92 16.92 8.33 8.75 11.57 7.97 6.25 4.35 40 E9a_E10a KnownJunction 0 155.95 48.35 77.79 129.45 102.72 74.90 71.37 96.81 42.85 73.52 146.51 236.63 108.60 297.72 267.26 270.70 193.36 65.87 117.37 41.10 44.17 67.11 75.20 41 I9 Intron 0 36.73 11.76 3.34 9.27 11.81 11.45 10.48 4.31 3.64 4.42 3.53 16.13 14.62 9.06 12.45 11.31 6.53 3.22 4.85 9.72 1.35 1.59 1.34 42 I9_AR1 ActiveIntronRegion 0 30.84 13.58 3.70 10.26 8.66 8.91 11.52 4.69 4.84 5.18 3.91 19.28 18.65 8.29 11.92 10.83 5.34 4.28 4.51 9.90 0.90 1.69 0.59 43 I9_SR1 SilentIntronRegion 0 55.97 6.40 2.30 6.36 21.90 19.63 7.50 3.24 0.00 2.15 2.43 6.73 2.43 11.67 14.40 13.10 10.39 0.00 6.02 9.38 2.78 1.31 3.70 44 E10_Aa NovelBoundary 0 74.46 37.62 13.66 15.78 8.06 32.08 0.00 10.06 12.44 7.90 9.90 6.75 5.68 16.54 5.19 19.65 13.93 18.12 18.07 12.91 0.00 2.94 0.00 45 ER10a ExonRegion 0 183.87 92.42 92.17 101.32 120.70 69.05 72.11 79.55 58.00 67.01 173.11 268.98 164.19 345.69 261.21 252.76 183.98 57.84 145.31 73.98 44.37 77.53 72.40 46 E10_Da NovelBoundary 1 13.41 11.71 4.35 13.19 31.83 10.22 25.57 4.31 8.28 4.30 2.68 54.17 19.32 4.24 0.00 23.67 13.84 0.00 7.53 2.94 0.00 2.69 0.00 47 E10a_E11a KnownJunction 0 243.82 159.18 81.93 76.38 228.78 124.64 166.18 81.70 50.43 75.91 194.21 332.06 143.98 402.91 246.62 160.90 239.83 58.45 93.18 69.73 49.05 67.66 63.42 48 I10_AR1 ActiveIntronRegion 0 10.58 6.61 8.22 7.62 20.07 3.21 10.26 1.93 4.14 1.28 4.83 40.56 15.66 10.49 10.75 7.43 6.60 3.45 2.39 3.19 0.00 6.25 0.73 49 ER11a ExonRegion 0 307.47 118.95 82.49 78.84 178.65 134.00 106.25 60.21 49.13 73.95 184.87 278.89 142.66 323.43 252.45 236.11 184.21 53.66 117.58 61.47 63.06 69.84 60.80 50 E11a_E12a KnownJunction 0 87.50 84.66 80.01 56.34 41.43 21.98 57.54 24.19 31.63 57.51 88.29 118.09 29.38 188.12 186.04 144.24 125.20 36.81 62.21 26.08 21.25 54.07 28.34 51 ER12a ExonRegion 0 65.27 48.16 42.74 44.29 48.31 43.41 38.76 21.59 16.90 32.21 48.18 94.35 55.58 61.43 74.19 51.43 44.81 23.82 35.24 37.55 16.94 33.20 24.19 52 IG28_AR2 ActiveIntergenicRegion 0 0.00 0.00 4.73 14.99 5.35 23.32 5.30 1.73 0.00 3.44 7.73 0.00 0.00 3.25 4.56 0.00 0.00 9.24 8.65 3.34 1.57 2.08 5.87