Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARMC2 Gene 0 13.55 9.08 5.98 9.26 13.24 27.36 9.94 14.45 16.58 10.41 1.51 1.54 0.51 0.32 1.07 0.54 2.23 10.64 12.66 8.26 7.29 6.82 7.25 2 368972 Transcript 0 1.66 1.19 0.08 0.94 2.47 2.94 1.61 1.44 1.42 1.37 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.33 0.34 0.33 0.92 3 392644 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 237512 Transcript 0 0.43 0.00 1.03 1.28 0.00 2.65 0.27 8.86 4.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.45 0.00 0.00 5 414610 Transcript 0 17.29 29.88 14.99 34.18 29.99 99.35 17.86 47.69 33.57 31.28 1.86 4.36 2.12 0.23 0.70 1.02 1.43 25.29 15.67 20.03 3.76 5.16 7.16 6 447003 Transcript 0 2.12 4.07 4.90 5.45 2.68 22.92 10.59 16.42 6.79 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.63 6.37 12.77 4.41 3.13 1.47 7 481850 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.02 0.00 0.00 8 IG1_AR1 ActiveIntergenicRegion 0 2.26 2.00 0.94 9.09 4.03 9.32 2.73 1.06 22.30 4.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 2.25 1.64 3.86 1.93 2.21 9 ER1a ExonRegion 0 1.51 1.74 0.00 0.00 0.00 4.45 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 27.99 19.37 10.87 3.30 30.21 83.04 28.02 10.71 10.59 7.37 1.59 0.45 0.00 1.24 3.02 1.22 4.07 15.36 13.69 6.30 9.12 3.18 14.49 11 E1a_E3a KnownJunction 0 6.67 15.13 15.40 8.96 4.33 13.40 5.17 4.68 27.72 6.45 0.00 6.30 0.00 2.47 0.00 0.00 0.00 9.16 21.27 2.43 0.00 5.82 0.00 12 ER2a ExonRegion 0 0.86 0.00 0.41 0.49 0.00 2.80 0.54 3.43 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.90 0.00 0.00 13 E2a_E3a KnownJunction 0 0.00 0.00 1.66 2.06 0.00 2.50 0.00 14.29 6.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 8.44 18.47 23.93 29.91 32.96 80.08 30.30 38.69 45.34 40.36 11.06 8.92 3.22 2.08 5.18 3.83 18.96 47.79 48.85 35.46 20.67 18.46 24.38 15 E3a_E4a KnownJunction 0 30.60 20.72 12.95 23.61 29.54 22.32 24.33 25.06 39.35 55.82 7.37 18.01 6.82 0.00 10.14 7.09 8.60 45.97 36.33 23.01 19.71 13.66 16.56 16 ER4a ExonRegion 0 13.48 19.25 11.20 21.62 8.54 31.50 11.93 35.90 30.71 30.40 12.47 8.54 6.87 4.14 6.64 1.34 15.33 33.49 44.94 25.44 19.35 16.30 16.94 17 E4a_E5a KnownJunction 0 6.67 28.02 16.14 17.18 0.00 24.42 11.22 40.33 30.01 22.99 7.37 11.85 6.33 2.35 4.45 3.67 18.51 24.42 25.60 33.68 17.42 12.19 11.61 18 ER5a ExonRegion 0 23.42 22.84 14.77 11.24 14.36 37.10 16.76 29.55 17.67 19.56 5.24 6.73 0.24 1.23 4.10 2.70 10.80 50.85 40.01 17.87 13.98 19.68 20.59 19 E5_Da NovelBoundary 0 17.86 12.76 1.39 3.63 3.65 0.00 0.00 2.14 1.27 4.27 5.21 0.00 6.49 4.83 0.00 4.36 0.00 4.93 0.00 3.20 0.00 2.57 4.35 20 E5a_E6b KnownJunction 0 3.26 8.75 8.99 10.12 4.24 39.47 20.89 39.97 13.08 7.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.42 23.44 28.00 8.59 2.88 0.00 21 ER5b ExonRegion 0 11.70 9.57 12.25 8.34 8.18 36.14 17.76 32.74 13.08 8.64 1.48 0.00 0.00 0.00 1.02 0.00 0.19 48.48 17.99 22.03 8.04 8.58 8.12 22 ER6a ExonRegion 0 2.12 4.07 4.90 5.45 2.68 22.92 10.59 16.42 6.79 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.63 6.37 12.77 4.41 3.13 1.47 23 ER6b ExonRegion 0 11.68 25.23 12.43 12.85 26.82 73.29 25.57 45.72 31.77 24.25 1.10 0.89 0.00 0.00 1.62 0.74 0.00 29.38 21.74 24.56 7.15 10.74 12.98 24 E6_Da NovelBoundary 0 0.00 2.89 2.90 0.00 7.13 12.55 7.77 8.30 10.07 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 5.24 0.00 7.96 0.00 25 E6b_E7a KnownJunction 0 3.33 5.26 5.09 2.06 0.00 24.87 3.80 12.94 8.48 8.57 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 11.10 26 E6b_E8a KnownJunction 0 3.11 21.25 3.55 5.56 15.87 29.87 3.75 11.71 9.52 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 4.24 15.15 13.71 8.63 4.35 27 ER6c ExonRegion 0 4.94 21.69 12.66 7.72 10.70 50.12 12.36 29.96 24.29 14.91 1.93 0.00 0.00 0.00 0.00 0.00 0.00 7.39 8.49 22.69 13.22 8.33 11.75 28 I6 Intron 0 5.61 16.89 3.68 9.81 12.93 48.57 12.20 19.38 17.28 15.46 0.45 0.97 0.48 0.63 0.26 0.82 1.82 6.18 4.52 15.51 2.33 3.53 3.86 29 I6_AR1 ActiveIntronRegion 0 2.03 7.02 2.26 4.20 6.51 15.82 4.78 13.01 5.55 3.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 1.19 11.51 0.00 2.08 0.00 30 I6_SR1 SilentIntronRegion 0 4.36 16.34 3.20 10.54 14.68 51.96 14.37 20.04 19.93 17.76 0.16 1.21 0.78 0.93 0.00 1.00 2.52 7.39 4.95 17.05 1.69 4.35 3.61 31 I6_AR2 ActiveIntronRegion 0 6.50 21.98 7.30 12.25 14.79 63.31 16.03 27.21 18.69 15.64 0.29 0.00 0.50 0.00 0.62 2.09 1.00 3.61 4.35 21.06 4.71 4.86 6.76 32 I6_SR2 SilentIntronRegion 0 4.23 29.91 3.73 8.12 16.50 33.77 11.25 21.46 17.19 20.36 0.00 0.00 0.00 0.00 0.00 0.00 3.30 3.70 2.92 15.07 4.41 2.08 8.57 33 I6_AR3 ActiveIntronRegion 0 9.00 21.51 2.93 9.04 11.91 48.11 9.53 16.84 17.10 16.65 1.46 1.70 0.00 0.68 0.39 0.00 1.61 8.22 5.25 12.82 3.19 2.07 4.07 34 E7_Aa NovelBoundary 0 16.45 24.54 5.35 18.75 25.04 86.54 13.73 30.76 20.95 12.95 0.00 0.00 6.01 0.00 0.00 0.00 0.00 10.53 0.00 23.20 0.00 0.00 8.54 35 E7_Da NovelBoundary 0 6.22 43.35 20.58 20.51 32.60 106.25 20.76 39.80 35.97 28.50 2.68 6.30 0.00 0.00 0.00 0.00 4.77 12.73 18.73 18.79 0.00 5.45 3.67 36 ER7a ExonRegion 0 3.48 22.63 7.91 7.52 15.45 56.02 8.16 22.14 15.02 15.50 3.37 5.03 0.00 0.00 0.00 0.00 2.56 2.09 6.68 13.25 0.00 2.02 6.82 37 ER7b ExonRegion 0 17.29 29.88 14.99 34.18 29.99 99.35 17.86 47.69 33.57 31.28 1.86 4.36 2.12 0.23 0.70 1.02 1.43 25.29 15.67 20.03 3.76 5.16 7.16 38 E7_Db NovelBoundary 0 3.11 49.20 10.70 44.78 25.98 62.41 20.05 55.24 36.23 28.72 2.16 0.00 0.00 2.47 4.45 0.00 0.00 52.19 26.45 31.96 0.00 0.00 8.11 39 I7_SR1 SilentIntronRegion 0 7.82 18.39 11.64 23.18 25.41 102.39 14.56 23.27 11.26 8.80 1.10 0.00 0.00 0.00 0.00 0.00 0.00 5.92 6.41 11.66 0.62 0.59 5.44 40 I7_AR1 ActiveIntronRegion 0 8.79 22.67 9.93 33.07 33.45 86.15 13.61 31.52 17.38 15.92 0.60 0.56 1.95 0.83 0.32 0.70 2.59 18.90 13.96 17.29 1.04 3.11 5.63 41 E8_Aa NovelBoundary 0 11.34 0.00 0.00 0.00 4.33 5.56 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.87 0.00 0.00 42 ER8a ExonRegion 0 5.20 6.18 3.17 2.46 7.58 7.84 5.04 7.05 10.09 5.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.74 3.52 11.61 8.04 6.30 4.00 43 E8a_E9a KnownJunction 0 6.37 3.09 4.55 2.00 14.77 13.80 13.51 9.36 14.70 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 11.82 8.53 5.27 4.18 44 ER9a ExonRegion 0 3.04 7.66 4.12 2.74 9.73 14.28 4.20 6.98 23.82 3.94 0.00 0.00 0.00 0.00 1.23 0.00 0.00 1.83 9.88 7.69 6.14 3.54 4.12 45 E9_Da NovelBoundary 0 10.67 12.56 4.82 2.80 8.49 0.00 10.16 15.12 4.22 5.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 2.63 0.00 46 E9a_E10a KnownJunction 0 3.41 3.29 0.00 0.00 3.65 0.00 0.00 0.00 13.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 8.94 8.63 3.15 2.33 8.02 47 ER10a ExonRegion 0 17.97 12.47 3.17 4.27 17.23 6.12 5.92 3.73 12.07 4.38 0.56 0.00 0.00 0.00 0.00 0.00 0.00 1.38 11.82 3.30 2.85 3.05 5.34 48 E10a_E11a KnownJunction 0 0.00 0.00 0.00 1.66 3.57 2.90 2.25 0.00 7.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 4.18 49 I10 Intron 0 11.36 8.47 3.90 5.04 9.19 2.54 5.03 3.57 5.78 2.18 0.13 0.10 0.00 0.69 1.44 0.00 0.00 0.25 3.04 2.71 0.70 0.90 1.34 50 I10_SR1 SilentIntronRegion 0 16.97 13.15 4.96 7.39 15.99 2.79 7.06 5.19 6.74 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 3.79 3.62 0.99 0.28 2.89 51 I10_AR1 ActiveIntronRegion 0 19.35 8.74 5.08 6.46 8.75 4.17 6.93 4.60 8.59 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 4.72 3.46 0.48 1.69 0.95 52 ER11a ExonRegion 0 10.42 0.06 1.51 3.32 5.95 12.05 4.15 2.16 10.64 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.07 4.05 1.16 4.43 1.57 53 E11a_E12a KnownJunction 0 15.48 0.00 1.66 2.06 3.48 2.56 1.90 6.70 8.83 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 3.12 3.84 54 ER12a ExonRegion 0 5.82 3.21 0.14 6.39 7.24 8.39 7.45 8.02 13.18 3.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.57 2.97 2.04 6.02 3.16 55 E12a_E13a KnownJunction 0 0.00 0.00 0.00 3.80 16.47 7.44 2.25 4.11 3.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.94 7.68 56 E13_Aa NovelBoundary 0 18.00 0.00 0.00 7.09 0.00 2.38 0.00 7.76 22.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 13.74 3.26 3.15 5.39 0.00 57 ER13a ExonRegion 0 16.44 1.57 1.28 3.74 10.56 9.13 6.02 5.59 11.35 3.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.91 0.74 6.43 7.11 3.40 58 E13a_E14a KnownJunction 0 3.26 2.76 0.00 1.93 0.00 5.79 2.25 2.55 9.37 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 5.44 0.00 3.93 59 ER14a ExonRegion 0 9.38 2.89 0.77 1.87 5.67 6.84 2.63 8.23 9.52 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 3.26 5.91 1.54 3.35 60 E14a_E15a KnownJunction 0 0.00 0.00 1.30 2.06 4.33 2.73 3.62 1.77 7.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.22 0.00 2.66 3.12 0.00 61 ER15a ExonRegion 0 15.00 1.34 1.80 2.26 6.35 7.24 6.30 0.48 7.82 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 10.07 2.38 8.46 3.72 6.55 62 E15a_E17a KnownJunction 0 3.48 0.00 0.00 2.06 0.00 5.68 6.67 0.00 7.52 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 8.28 0.00 2.84 14.02 8.54 63 ER16a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.81 0.04 0.00 0.00 64 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER17a ExonRegion 0 23.42 2.03 2.43 3.01 8.27 7.53 4.34 0.00 14.89 6.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 6.22 1.42 9.41 7.72 5.25 66 E17a_E18a KnownJunction 0 51.34 3.29 1.39 1.33 11.04 16.07 0.00 2.18 10.76 8.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.61 3.26 15.38 15.74 3.67 67 ER18a ExonRegion 0 29.84 1.20 1.02 4.10 5.37 9.75 8.32 2.15 15.34 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 1.79 12.84 7.57 7.88 68 E18a_E19a KnownJunction 0 28.15 6.18 1.83 6.06 11.80 5.56 15.99 1.56 17.97 4.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 3.26 10.69 5.88 16.05 69 ER19a ExonRegion 0 16.38 1.68 1.08 8.37 9.17 11.49 6.73 5.32 10.73 4.24 0.00 0.00 0.00 0.00 0.26 0.00 0.00 2.71 5.89 1.66 15.44 8.85 3.02 70 E19a_E20a KnownJunction 0 10.15 0.00 0.00 6.33 19.19 15.96 5.96 4.89 17.65 6.69 0.00 0.00 0.00 0.00 4.45 0.00 0.00 2.57 4.42 3.26 10.75 2.33 7.94 71 ER20a ExonRegion 0 19.75 4.32 2.60 10.34 13.48 7.22 4.15 7.94 18.89 3.97 0.00 0.00 0.00 0.00 0.95 0.00 0.00 3.07 7.50 1.13 12.74 9.80 6.24 72 E20_Da NovelBoundary 0 17.41 2.89 1.60 12.79 10.87 0.00 0.00 9.65 23.96 3.87 0.00 0.00 0.00 0.00 5.19 0.00 0.00 2.24 16.47 3.20 5.37 13.47 4.10 73 E20b_E21a KnownJunction 0 33.78 0.00 1.74 12.69 14.52 9.99 1.90 14.21 22.25 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 16.38 0.00 14.95 5.39 0.00 74 ER20b ExonRegion 0 23.28 1.15 2.66 11.08 11.98 4.39 1.73 11.27 21.16 5.04 0.00 0.00 0.00 0.00 2.65 0.00 0.00 1.85 14.13 0.19 11.21 9.15 2.94 75 ER21a ExonRegion 0 13.66 3.30 3.15 5.04 7.94 8.42 3.83 6.87 10.37 3.04 0.16 0.29 0.00 0.00 0.69 0.00 0.00 0.25 2.15 0.69 3.72 5.00 3.31 76 E21_Da KnownBoundary 0 3.33 0.00 1.57 0.00 0.00 6.81 0.00 5.71 1.10 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 77 ER21b ExonRegion 0 1.81 0.64 0.16 1.88 4.93 1.43 2.85 2.88 2.85 2.75 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.65 0.68 0.65 1.84