Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DSE Gene 0 40.37 16.15 17.61 20.16 59.10 36.01 25.03 32.11 40.12 34.72 44.17 156.89 115.60 357.38 160.87 54.75 110.21 18.22 17.73 22.94 177.34 174.21 181.95 2 430252 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 452085 Transcript 0 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.10 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 4 331677 Transcript 0 0.52 0.00 0.00 0.24 0.98 0.22 0.45 0.63 0.45 0.22 0.51 2.53 0.84 7.93 6.49 1.28 3.07 0.90 0.78 1.42 3.61 2.49 1.56 5 359564 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 1.53 1.47 1.98 0.73 2.90 3.37 8.14 0.93 2.01 1.30 1.41 0.18 0.10 1.44 2.55 0.02 1.19 3.18 8.04 5.39 5.92 1.54 1.10 7 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 5.99 0.00 0.00 8 ER2a ExonRegion 0 1.55 0.00 0.00 0.00 2.95 0.67 0.49 1.89 1.33 0.00 0.71 6.82 0.00 8.32 3.34 0.04 0.64 2.70 2.34 3.09 6.48 6.88 1.08 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 0 0.00 0.00 0.00 0.73 0.00 0.00 0.87 0.00 0.03 0.65 0.82 0.78 2.53 15.47 16.14 3.81 3.81 0.00 0.00 1.17 4.35 0.59 3.61 11 E3_Ab KnownBoundary 0 0.00 3.03 0.00 2.06 0.00 0.00 0.00 0.00 0.00 3.17 2.68 6.30 0.00 13.77 13.97 3.50 9.07 6.14 0.00 2.56 13.16 2.20 12.89 12 ER3b ExonRegion 0 3.22 0.99 2.08 1.17 2.97 2.69 1.55 2.51 4.49 4.22 13.93 13.01 11.05 82.25 26.01 9.36 39.69 1.67 1.89 2.08 86.62 23.27 57.52 13 E3a_E4a KnownJunction 1 3.04 3.16 7.27 5.16 3.57 5.79 0.00 6.00 15.08 5.94 32.01 25.96 19.97 116.84 45.00 7.95 130.06 0.00 0.00 2.43 172.98 28.29 49.43 14 ER4a ExonRegion 0 6.26 4.27 4.94 6.38 13.26 20.73 11.99 12.48 27.90 23.50 49.02 66.13 50.17 355.89 89.58 45.95 117.66 19.21 15.61 23.87 245.40 119.56 185.18 15 E4a_E5a KnownJunction 0 5.78 0.00 1.48 7.36 11.12 33.90 14.09 18.98 31.16 19.69 46.33 36.01 44.64 344.75 109.52 62.72 101.73 13.97 8.00 20.13 248.96 279.65 253.36 16 I4_AR2 ActiveIntronRegion 0 2.12 0.00 2.45 0.00 0.00 0.00 0.00 3.14 0.11 2.29 10.02 25.98 13.64 11.37 2.90 4.59 3.30 0.00 6.37 8.51 0.00 2.84 2.94 17 I4_AR3 ActiveIntronRegion 0 2.12 0.00 1.84 0.00 0.00 1.53 1.88 3.46 0.10 2.29 9.83 25.98 18.76 7.99 2.90 2.97 3.30 0.00 6.37 5.14 0.00 2.95 4.65 18 I4_AR4 ActiveIntronRegion 0 3.29 0.00 1.50 0.00 2.08 1.83 2.65 1.92 2.33 2.17 11.60 25.50 15.11 9.93 3.22 2.97 3.30 0.00 6.37 2.36 0.00 2.08 2.94 19 I4_SR1 SilentIntronRegion 0 0.60 0.00 3.68 1.36 2.29 0.00 2.65 0.00 0.00 0.00 3.87 21.65 23.45 6.26 0.00 1.27 3.30 0.00 0.00 2.13 0.00 0.00 2.94 20 I4_AR6 ActiveIntronRegion 0 0.00 0.00 3.68 1.36 2.68 0.00 1.10 0.00 0.00 0.00 3.87 25.26 32.05 4.87 0.00 2.97 3.30 0.00 0.00 2.13 0.00 0.00 2.94 21 I4_SR2 SilentIntronRegion 0 0.46 0.00 1.16 0.26 0.37 0.00 1.45 1.70 1.76 0.00 5.18 31.77 10.67 4.97 2.25 1.90 0.94 0.33 1.15 1.41 0.00 2.63 1.43 22 ER5a ExonRegion 0 5.06 1.07 3.38 9.69 19.37 20.24 10.15 17.06 36.10 29.59 68.71 93.29 61.19 394.49 98.16 54.28 177.11 19.16 17.06 27.61 247.89 150.26 247.10 23 E5_Da KnownBoundary 0 13.93 2.50 12.06 6.29 16.13 40.54 11.70 24.93 49.71 33.09 72.65 154.55 117.04 467.19 110.02 73.57 181.67 22.97 40.10 29.21 270.46 99.32 251.14 24 ER5b ExonRegion 0 9.95 5.00 11.53 7.14 36.56 28.09 23.99 21.19 55.10 38.12 77.04 195.97 129.58 497.16 117.13 87.71 186.95 28.53 31.18 33.59 284.16 199.58 311.54 25 E5b_E6a KnownJunction 0 7.04 5.59 14.67 11.89 43.89 61.90 13.03 31.63 45.98 23.75 59.86 210.82 143.33 498.68 142.16 83.14 154.65 21.72 17.98 35.28 320.32 176.72 296.30 26 ER6a ExonRegion 0 7.76 6.36 9.87 13.23 26.62 25.42 17.94 26.81 39.21 29.60 57.46 203.72 111.29 449.94 113.63 76.02 156.38 29.59 27.58 28.40 255.13 189.32 238.70 27 E6a_E7a KnownJunction 0 14.60 6.12 14.52 10.12 27.67 37.99 17.84 22.84 30.73 30.25 42.33 110.29 75.81 350.40 118.18 66.22 95.75 22.22 12.14 26.08 194.97 147.08 151.95 28 E6a_E8a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 4.20 0.00 0.00 12.45 6.82 40.91 24.11 3.67 21.13 2.57 0.00 3.13 5.19 19.96 18.95 29 I6 Intron 0 4.02 1.06 0.55 0.89 6.70 3.78 3.53 2.48 5.62 3.10 6.11 49.12 36.97 38.47 6.36 3.19 12.16 0.58 1.23 3.04 7.57 26.01 15.74 30 I6_SR1 SilentIntronRegion 0 3.89 0.65 0.42 0.67 5.94 3.46 3.97 2.37 4.92 3.16 4.80 47.12 37.48 37.04 6.08 2.73 11.12 0.42 0.59 2.45 6.69 28.22 13.63 31 I6_AR1 ActiveIntronRegion 0 4.72 1.59 0.81 1.27 7.70 4.46 2.87 2.22 6.87 3.13 8.15 56.34 38.97 44.70 6.29 3.50 15.26 1.07 1.70 4.37 10.22 23.29 19.71 32 I6_SR2 SilentIntronRegion 0 2.52 1.97 0.54 1.13 8.34 3.67 2.92 4.08 6.02 2.68 7.88 38.79 27.56 27.55 8.50 5.14 8.76 0.00 3.80 2.51 4.57 21.18 16.38 33 ER7a ExonRegion 0 13.39 9.34 16.22 14.80 37.51 31.11 18.74 25.20 34.51 30.78 45.30 170.91 127.60 361.49 120.49 58.91 120.04 15.78 13.25 21.48 220.49 142.04 167.33 34 E7_Da NovelBoundary 0 2.74 5.79 6.56 7.39 3.14 10.51 4.11 6.08 20.34 14.32 16.21 39.76 43.02 134.38 34.61 14.18 43.10 9.37 0.00 11.25 78.46 45.19 68.63 35 E7a_E8a KnownJunction 0 18.08 8.29 24.51 15.52 20.88 18.11 8.08 22.43 45.37 24.28 35.90 160.40 138.79 452.82 139.07 74.34 109.49 17.78 0.00 28.06 250.51 138.51 227.92 36 I7 Intron 0 5.47 1.08 1.17 1.08 10.48 4.15 5.18 2.95 5.10 3.37 4.12 39.08 35.74 31.06 6.47 4.35 9.41 0.59 1.70 2.55 7.16 28.92 14.08 37 I7_SR1 SilentIntronRegion 0 3.34 1.26 0.50 0.59 7.98 1.51 3.36 1.24 3.66 1.99 3.58 26.56 29.88 24.43 4.99 2.86 6.57 0.76 0.87 1.02 3.18 21.01 9.68 38 I7_AR1 ActiveIntronRegion 0 6.90 0.34 1.23 1.16 11.44 4.52 5.26 3.90 5.99 3.11 4.20 50.09 49.03 32.09 6.12 5.92 9.09 0.21 0.60 3.68 4.89 34.70 11.91 39 I7_SR2 SilentIntronRegion 0 4.34 1.19 0.00 1.16 13.77 11.90 4.75 3.84 4.40 2.21 2.97 59.56 33.17 31.73 9.98 5.44 7.73 1.44 6.37 2.08 9.14 60.32 6.80 40 I7_AR2 ActiveIntronRegion 0 6.94 1.70 2.15 1.70 12.71 6.91 7.75 4.23 6.18 5.75 4.89 42.59 28.84 39.39 8.74 4.59 14.00 0.72 3.81 3.46 15.40 31.09 23.55 41 E8_Aa NovelBoundary 0 20.30 11.38 3.43 7.09 24.96 5.00 6.76 9.41 9.81 7.71 12.48 89.88 26.62 50.33 11.25 8.20 19.64 2.40 0.00 0.00 25.33 32.45 26.72 42 ER8a ExonRegion 0 62.01 23.88 24.73 28.62 85.61 47.80 33.38 43.79 49.48 43.94 46.99 197.02 149.54 404.11 214.98 62.21 116.33 19.77 19.61 25.56 175.27 216.82 199.60 43 ER8b ExonRegion 0 2.12 0.00 0.00 2.04 6.69 0.00 1.32 1.73 0.00 0.00 0.00 15.15 0.00 4.87 7.25 0.00 0.00 0.00 0.00 0.00 0.00 7.29 2.94 44 ER8c ExonRegion 0 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.10 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 45 IG39_AR1 ActiveIntergenicRegion 0 3.74 2.77 0.25 2.65 9.05 4.24 3.09 4.90 3.62 2.84 0.80 31.18 31.82 17.78 7.71 1.41 4.73 0.00 0.43 1.16 1.06 29.12 13.65 46 IG39_SR1 SilentIntergenicRegion 0 1.17 0.00 0.00 3.03 7.81 1.57 3.58 1.60 5.82 1.81 2.16 41.98 26.34 21.44 5.66 0.62 6.58 0.00 1.30 2.60 0.85 18.58 19.50 47 IG39_AR2 ActiveIntergenicRegion 0 2.68 0.16 1.18 1.44 6.71 6.22 2.16 3.23 5.93 3.21 1.75 25.59 19.30 21.41 10.18 2.17 7.64 1.04 1.81 1.38 5.98 18.62 17.96 48 IG39_AR3 ActiveIntergenicRegion 0 7.56 2.70 0.69 1.32 12.22 5.40 3.46 3.43 4.26 3.31 1.01 23.01 12.40 13.46 10.27 1.11 4.76 0.45 1.77 4.28 3.87 13.48 15.18 49 IG39_SR2 SilentIntergenicRegion 0 4.69 1.13 0.87 0.02 1.80 0.00 1.86 2.08 2.53 1.28 5.06 9.76 8.37 15.09 8.04 1.96 5.52 0.37 1.29 2.32 10.60 20.86 17.06 50 IG39_AR4 ActiveIntergenicRegion 0 18.94 1.89 1.69 2.09 8.81 4.86 2.75 2.76 3.95 2.24 1.66 14.31 9.19 17.69 15.89 3.55 3.17 1.22 1.74 1.36 3.35 20.12 21.07