Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATG5 Gene 0 59.77 67.11 45.35 54.02 64.45 73.20 49.03 39.44 37.40 46.11 104.52 99.16 67.37 79.16 80.78 65.72 68.37 23.94 22.85 36.25 35.62 81.03 42.91 2 360666 Transcript 0 3.17 2.61 0.00 0.10 1.15 5.89 0.95 0.74 0.26 4.45 0.97 0.00 0.00 0.58 1.04 3.40 0.00 0.92 0.00 3.50 2.99 7.59 3.36 3 369070 Transcript 1 10.37 54.60 23.98 28.50 32.51 31.80 37.67 9.12 39.58 26.84 31.53 30.46 26.62 21.01 21.51 8.03 38.90 14.47 9.51 36.88 3.15 45.80 8.02 4 369076 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 343245 Transcript 0 1.14 1.08 0.66 0.36 0.00 0.00 0.00 0.00 0.00 0.61 0.70 0.00 0.00 1.53 0.74 0.53 1.79 0.49 0.00 0.00 2.02 0.00 1.85 6 476518 Transcript 1 6.29 3.00 4.07 4.34 3.88 1.56 9.53 2.82 3.30 1.68 2.18 20.79 28.76 7.47 2.31 4.69 6.53 2.63 0.00 15.99 0.00 4.33 6.67 7 475645 Transcript 0 3.82 0.97 0.82 1.36 3.56 0.80 4.64 1.83 0.90 0.25 2.52 7.34 9.45 1.74 2.34 2.55 2.48 0.82 1.26 1.20 0.23 1.03 1.26 8 ER1a ExonRegion 0 6.35 5.23 0.00 0.19 2.29 11.79 1.89 1.48 0.53 1.64 1.93 0.00 0.00 1.16 2.07 6.79 0.00 1.85 0.00 6.99 5.98 15.18 6.71 9 ER1b ExonRegion 1 27.25 28.88 10.34 8.43 16.84 52.23 28.62 5.33 11.31 12.32 51.42 3.30 3.10 48.15 37.84 53.12 44.69 22.08 17.36 21.09 39.25 35.33 53.71 10 E1a_E3a KnownJunction 1 32.60 29.86 18.30 22.44 61.63 59.00 34.05 18.11 26.91 38.41 107.82 18.61 13.64 72.58 76.15 132.36 79.20 23.67 46.78 42.38 70.49 78.81 107.30 11 ER2a ExonRegion 0 2.28 2.16 1.31 0.73 0.00 0.00 0.00 0.00 0.00 1.23 1.40 0.00 0.00 0.82 1.47 1.07 3.58 0.99 0.00 0.00 1.07 0.00 0.21 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 3.50 13 ER3a ExonRegion 1 32.40 48.70 48.76 48.24 46.87 96.54 47.47 33.52 50.34 58.46 232.36 105.65 58.26 136.81 121.96 128.23 142.42 54.50 39.89 79.39 74.21 115.20 92.08 14 E3a_E4a KnownJunction 0 37.93 60.58 59.67 58.10 75.98 85.92 77.46 30.11 33.04 53.86 219.90 132.04 67.69 134.32 103.84 122.28 152.13 18.86 43.58 66.79 57.08 134.41 62.49 15 E3a_E5a KnownJunction 0 10.37 54.60 23.98 28.50 32.51 31.80 37.67 9.12 39.58 26.84 31.53 30.46 26.62 21.01 21.51 8.03 38.90 14.47 9.51 36.88 3.15 45.80 8.02 16 E3a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER4a ExonRegion 0 50.48 90.43 44.85 58.06 46.01 88.98 69.55 43.44 40.31 51.66 270.61 208.46 137.62 144.62 115.73 112.96 172.86 15.46 23.34 65.62 53.28 147.00 59.49 18 E4a_E5a KnownJunction 1 93.79 107.61 34.09 66.33 40.66 73.76 52.38 46.74 36.54 69.12 207.37 267.69 274.98 123.32 131.78 86.30 195.70 10.32 22.59 67.82 69.81 184.74 49.77 19 ER5a ExonRegion 0 105.48 115.73 59.69 99.04 123.25 115.13 107.27 71.54 76.86 80.62 269.92 307.61 208.26 167.59 145.36 139.65 202.23 33.42 43.83 90.82 59.36 180.03 60.63 20 E5a_E6a KnownJunction 0 111.80 133.53 67.59 112.94 151.36 119.02 92.17 84.74 84.61 90.98 239.53 202.57 181.48 196.48 130.17 172.09 206.54 30.88 43.58 116.97 33.36 179.60 69.83 21 ER6a ExonRegion 0 118.58 150.43 77.22 105.03 141.17 164.40 124.05 104.76 86.04 97.34 278.54 363.12 278.06 210.62 192.03 170.91 209.11 41.59 53.80 100.22 52.47 219.36 84.53 22 E6a_E7a KnownJunction 0 146.77 154.71 113.27 100.89 208.49 217.83 154.66 108.11 92.62 105.25 357.51 462.60 268.98 240.39 206.32 251.73 231.60 53.97 60.71 101.63 73.58 172.31 104.91 23 ER7a ExonRegion 0 107.96 142.86 98.06 90.52 155.50 168.83 129.55 116.15 85.94 106.03 341.41 343.62 295.08 270.37 228.28 242.40 198.19 53.08 70.85 104.88 78.92 210.28 122.35 24 E7a_E8b KnownJunction 0 126.32 138.99 109.34 99.72 179.97 206.02 141.59 107.00 76.76 86.60 325.56 360.57 291.86 373.54 383.83 243.35 157.83 46.01 113.79 146.63 73.52 224.42 129.07 25 ER8a ExonRegion 0 3.82 0.97 0.82 1.36 3.56 0.80 4.64 1.83 0.90 0.25 2.52 7.34 9.45 1.74 2.34 2.55 2.48 0.82 1.26 1.20 0.23 1.03 1.26 26 E8_Ab KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 6.57 1.79 0.00 0.00 0.00 26.13 5.12 0.00 0.00 3.74 0.00 0.00 3.26 0.00 2.45 0.00 27 ER8b ExonRegion 0 80.63 115.95 97.27 86.35 125.21 167.22 102.24 77.56 72.28 89.39 310.85 269.76 191.65 280.43 209.11 220.55 219.35 73.31 72.26 80.29 121.69 185.33 105.62 28 E8_Da KnownBoundary 1 12.74 3.35 7.07 5.09 7.13 2.90 18.28 1.81 4.48 2.39 0.00 12.60 6.82 13.77 0.00 0.00 25.53 6.26 0.00 28.51 0.00 2.57 16.73 29 E8a_E9a KnownJunction 0 75.57 107.68 79.48 62.23 142.61 177.91 135.80 59.19 59.58 73.44 236.22 209.32 91.23 179.94 114.35 194.82 138.20 46.34 62.12 59.83 90.38 110.59 104.14 30 ER8c ExonRegion 1 6.29 3.00 4.07 4.34 3.88 1.56 9.53 2.82 3.30 1.68 2.18 20.79 28.76 7.47 2.31 4.69 6.53 2.63 0.00 15.99 0.00 4.33 6.67 31 E8_Db NovelBoundary 1 0.00 6.71 1.57 0.00 8.32 0.00 9.23 1.93 0.00 1.26 0.00 44.11 20.13 4.94 0.00 7.43 4.77 2.57 0.00 9.40 0.00 3.12 8.19 32 I8 Intron 0 8.13 6.93 2.96 6.10 7.95 4.92 10.56 4.73 5.31 3.80 4.47 18.34 19.51 4.42 4.68 6.73 6.86 4.90 2.10 9.12 2.30 8.98 5.48 33 I8_SR1 SilentIntronRegion 0 3.89 5.12 1.20 2.90 3.77 1.24 8.35 2.71 2.73 2.79 2.29 12.56 20.05 3.26 3.61 5.75 6.08 1.99 1.61 8.27 1.82 3.76 4.02 34 I8_SR2 SilentIntronRegion 0 5.66 4.55 1.52 4.04 5.13 2.44 7.15 3.16 4.69 1.54 3.57 20.62 18.45 4.05 2.98 5.67 6.15 6.00 1.62 9.58 2.31 7.72 4.84 35 I8_AR2 ActiveIntronRegion 0 4.23 4.07 2.45 14.41 4.59 1.22 16.96 5.35 3.06 8.03 7.27 3.92 5.36 4.25 2.90 7.93 10.06 11.88 0.00 7.80 0.63 17.56 10.07 36 I8_AR3 ActiveIntronRegion 0 13.65 12.56 5.90 10.79 16.28 13.68 18.93 8.17 8.85 9.28 7.38 21.74 21.66 6.75 7.60 9.04 8.07 6.43 2.69 9.31 3.06 16.72 8.01 37 I8_SR3 SilentIntronRegion 0 23.86 18.56 11.78 21.97 18.36 14.57 18.45 13.79 12.90 8.19 8.02 25.41 24.78 4.48 12.38 8.11 8.27 4.37 2.75 9.81 1.54 20.24 6.36 38 I8_AR4 ActiveIntronRegion 0 41.39 16.28 16.24 21.57 33.75 19.97 23.30 19.82 13.25 13.78 16.73 20.48 25.93 6.86 14.52 9.98 9.55 4.95 7.99 10.14 3.22 26.95 7.43 39 E9_Aa NovelBoundary 0 39.64 23.81 12.89 27.64 27.59 46.28 18.81 13.60 13.69 10.85 13.95 30.91 20.45 2.47 17.80 19.74 17.48 3.32 8.38 2.49 7.35 7.59 4.10 40 ER9a ExonRegion 0 112.90 88.94 99.62 88.96 124.22 153.70 90.58 85.86 73.62 93.38 242.12 212.08 138.41 192.87 228.27 152.18 141.83 62.51 53.75 61.38 87.32 158.12 88.59 41 E9_Da KnownBoundary 1 132.99 64.40 61.71 83.27 120.71 137.88 62.76 50.32 50.98 88.64 32.53 137.44 73.37 34.85 81.46 11.71 27.68 10.53 7.72 48.45 9.27 107.22 41.40 42 ER9b ExonRegion 1 56.81 74.45 34.17 57.68 55.04 42.98 31.37 24.71 26.84 34.45 8.60 25.11 10.23 6.72 11.99 6.20 7.90 5.53 6.15 16.35 8.38 43.45 15.69