Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRDM1 Gene 0 61.05 3.81 13.55 12.93 25.90 6.92 9.13 13.20 36.05 12.88 42.94 204.12 160.90 93.79 158.07 114.17 126.79 0.30 0.33 0.80 96.02 212.49 159.20 2 369091 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 369096 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 71246 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 424894 Transcript 0 2.14 0.18 0.28 1.11 1.25 0.14 0.31 0.40 1.43 0.39 0.60 1.39 0.30 0.31 8.34 3.93 3.59 0.21 0.50 0.17 1.90 9.84 6.61 6 489365 Transcript 1 8.08 0.48 1.29 3.33 3.47 0.22 1.41 0.02 3.23 1.01 4.78 18.18 9.98 3.69 15.79 6.36 13.88 0.44 0.00 0.25 5.35 4.37 6.26 7 450060 Transcript 0 4.02 0.00 1.10 2.09 1.98 0.00 0.00 0.00 2.08 0.00 2.21 12.17 5.71 1.20 9.21 15.16 7.08 0.00 0.00 0.68 13.89 3.14 4.38 8 456278 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 481163 Transcript 0 6.38 0.00 1.97 0.33 1.19 0.00 0.43 1.32 5.73 0.74 2.53 17.25 4.99 5.09 5.68 5.37 4.95 0.00 0.00 0.00 4.06 2.00 3.81 10 369089 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 3.50 0.67 0.65 0.04 4.43 2.43 0.88 3.41 8.20 4.06 17.31 0.22 3.41 27.04 33.99 53.02 51.08 0.00 0.00 0.00 56.28 46.93 85.54 12 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.20 1.18 9.11 11.55 6.82 13.83 0.00 0.00 8.04 0.00 0.00 0.00 13.90 11.14 7.60 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1b ExonRegion 0 0.00 0.85 4.52 3.27 0.99 2.40 1.04 6.46 21.26 9.49 33.29 47.23 26.33 66.11 66.42 96.47 128.95 0.00 0.00 0.89 99.00 125.64 131.23 15 E1b_E3a KnownJunction 1 0.00 0.00 8.34 1.40 0.00 9.26 1.85 10.64 29.80 5.32 38.90 12.30 19.97 51.86 99.64 182.26 79.01 0.00 0.00 0.00 93.59 117.38 208.37 16 ER2a ExonRegion 0 4.28 0.35 0.57 2.21 2.50 0.29 0.62 0.80 2.86 0.79 1.20 2.77 0.60 0.62 16.68 7.86 7.19 0.43 0.99 0.33 3.80 7.12 8.87 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.55 4.35 18 ER3a ExonRegion 0 12.30 3.29 9.82 3.97 10.58 7.20 3.85 8.32 38.20 11.67 43.36 133.74 94.29 88.56 96.97 107.42 134.48 1.74 0.00 2.76 150.05 150.01 167.12 19 E3_Ab KnownBoundary 0 13.41 0.00 18.33 3.33 3.48 0.00 6.18 12.82 42.62 20.52 29.48 220.42 106.00 110.78 112.00 134.32 150.82 1.62 0.00 0.00 157.16 176.72 173.88 20 ER3b ExonRegion 0 16.60 1.46 11.98 2.02 9.91 0.41 5.21 13.85 34.73 18.70 54.57 182.16 130.93 103.86 94.79 125.55 184.82 0.14 0.00 1.77 133.61 200.76 186.40 21 E3a_E4a KnownJunction 0 10.45 3.16 8.01 1.83 24.45 5.45 10.16 18.98 40.65 19.39 84.13 244.73 219.30 155.93 80.23 148.59 256.85 0.00 0.00 3.26 138.88 230.18 231.16 22 I3 Intron 0 20.56 0.42 2.68 2.85 4.54 0.41 2.36 2.07 7.61 0.84 2.46 31.82 20.97 3.64 25.28 13.78 16.66 0.02 0.39 0.40 4.70 6.02 7.69 23 I3_SR1 SilentIntronRegion 0 12.44 0.93 1.15 3.22 3.31 0.34 2.32 1.76 10.01 0.26 3.96 32.44 22.32 5.07 19.55 16.41 24.13 0.04 0.58 0.45 5.12 4.75 8.61 24 I3_AR2 ActiveIntronRegion 0 19.53 0.32 1.94 4.13 6.64 0.86 5.35 1.43 8.93 1.89 0.83 38.77 28.33 4.16 26.95 14.44 20.31 0.00 0.00 0.07 4.75 5.67 8.38 25 I3_SR2 SilentIntronRegion 1 44.67 0.35 3.76 3.05 7.46 0.59 3.37 2.09 6.35 0.75 2.28 27.98 15.51 3.32 41.06 18.29 13.46 0.00 0.56 0.37 5.81 5.18 8.26 26 I3_AR4 ActiveIntronRegion 0 8.78 0.00 1.08 1.75 3.42 0.00 0.00 0.93 6.60 0.66 1.55 30.41 37.06 1.68 16.02 5.69 9.65 0.00 0.94 0.00 3.49 8.27 6.98 27 I3_SR4 SilentIntronRegion 1 5.06 0.00 6.93 2.73 2.09 0.00 0.00 8.27 9.29 7.53 2.35 49.32 26.51 1.13 33.68 12.02 16.50 0.00 0.00 1.85 3.74 10.33 11.24 28 I3_SR5 SilentIntronRegion 0 12.97 0.38 3.42 2.18 4.47 0.34 0.25 3.07 7.03 1.58 2.99 48.32 32.85 4.49 25.92 11.34 21.28 0.00 1.18 0.20 6.96 8.45 7.01 29 I3_SR7 SilentIntronRegion 0 12.75 0.39 2.48 1.99 1.75 0.21 2.16 2.20 4.67 0.98 4.08 26.37 22.00 2.19 10.43 5.18 7.74 0.00 0.00 0.41 2.54 11.87 3.75 30 ER4a ExonRegion 0 22.93 2.03 8.99 2.04 18.28 3.67 11.47 13.83 36.44 14.91 81.50 266.26 227.47 146.44 72.05 154.06 251.97 0.00 0.00 2.13 128.18 244.81 227.10 31 ER4b ExonRegion 0 24.21 1.27 15.64 7.10 7.65 10.07 7.21 16.01 38.95 20.71 76.28 332.19 232.24 146.94 129.59 228.72 264.68 0.00 0.00 2.30 118.05 273.51 291.89 32 E4_Db KnownBoundary 0 3.78 0.00 0.00 5.26 0.00 0.00 0.00 1.52 4.40 0.00 0.00 26.56 6.82 2.47 32.88 13.07 13.65 0.00 0.00 0.00 8.83 2.76 8.71 33 E4b_E7a KnownJunction 0 23.49 2.57 10.41 8.32 8.23 10.68 5.61 28.55 44.96 9.00 126.66 349.76 267.19 188.42 115.09 236.43 302.01 0.00 0.00 0.00 138.01 362.01 335.14 34 ER4c ExonRegion 0 8.08 0.48 1.29 3.33 3.47 0.22 1.41 0.02 3.23 1.01 4.78 18.18 9.98 3.69 15.79 6.36 13.88 0.44 0.00 0.25 5.35 4.37 6.26 35 ER5a ExonRegion 0 4.02 0.00 1.10 2.09 1.98 0.00 0.00 0.00 2.08 0.00 2.21 12.17 5.71 1.20 9.21 15.16 7.08 0.00 0.00 0.68 13.89 3.14 4.38 36 E5_Ab KnownBoundary 0 3.63 0.00 5.59 3.66 0.00 0.00 1.72 0.00 7.64 0.00 7.16 18.01 6.66 2.65 4.45 20.68 18.70 0.00 0.00 3.26 11.43 13.10 11.61 37 ER5b ExonRegion 0 1.22 0.00 0.36 1.33 0.00 0.00 0.00 0.00 2.94 0.00 3.04 8.57 0.90 1.62 3.02 9.99 3.93 0.00 0.00 1.31 6.42 6.74 3.25 38 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 39 ER6a ExonRegion 0 6.48 0.00 0.38 0.00 0.00 0.00 0.00 0.97 2.55 0.93 1.45 0.00 0.00 1.22 3.26 0.00 2.48 0.00 0.00 0.00 5.92 1.56 2.94 40 ER6b ExonRegion 0 14.82 0.00 2.98 1.35 7.09 1.21 2.63 3.84 10.72 2.17 10.93 16.31 6.00 9.43 11.62 4.92 8.49 0.00 0.00 0.00 21.92 20.66 21.49 41 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 11.46 0.00 14.79 17.41 5.84 7.36 17.80 0.00 0.00 0.00 0.00 0.00 13.34 6.25 3.84 42 E7_Aa NovelBoundary 0 10.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 22.68 1.67 6.84 24.91 6.33 0.00 0.00 8.20 12.53 0.00 0.00 0.00 5.37 7.65 3.76 43 ER7a ExonRegion 0 26.62 1.74 15.29 7.38 13.78 3.78 8.52 15.60 72.95 19.75 100.85 461.05 316.40 205.24 145.58 270.71 266.84 0.56 0.00 0.86 233.28 358.46 328.39 44 E7_Da KnownBoundary 0 6.96 0.00 4.29 0.00 3.74 0.00 0.00 0.00 8.10 0.00 5.00 18.76 13.64 7.36 0.00 15.89 16.27 0.00 0.00 0.00 2.35 6.98 12.04 45 E7a_E8a KnownJunction 0 34.75 6.58 12.42 13.88 7.81 11.36 4.33 24.27 102.40 25.84 95.45 465.90 337.80 262.17 205.20 332.90 301.54 0.00 0.00 0.00 265.33 392.38 357.59 46 ER7b ExonRegion 0 6.27 0.00 3.56 0.66 2.39 0.00 0.86 1.66 8.92 0.56 3.61 34.50 9.98 8.96 8.09 10.73 7.42 0.00 0.00 0.00 2.20 2.43 4.68 47 E7_Db NovelBoundary 0 7.41 0.00 1.39 1.33 4.24 0.00 4.33 0.00 16.35 0.00 2.68 45.46 33.44 4.24 13.35 0.00 4.49 0.00 0.00 0.00 0.00 10.84 7.85 48 I7_AR1 ActiveIntronRegion 1 2.31 0.00 2.55 0.93 1.26 0.56 1.41 2.91 9.47 0.00 6.59 44.85 11.48 4.42 16.78 6.68 7.15 0.00 0.48 0.00 1.01 9.93 3.03 49 I7_AR5 ActiveIntronRegion 0 16.60 0.62 1.38 4.53 4.90 0.00 2.43 0.00 10.21 1.29 3.24 18.69 12.83 4.32 20.81 12.48 17.18 0.00 0.00 0.41 7.03 12.98 10.74 50 E8_Aa NovelBoundary 0 33.64 3.16 3.19 4.03 9.68 2.38 11.17 4.56 8.65 3.87 5.37 0.00 20.78 7.18 24.60 0.00 19.64 0.00 0.00 0.00 0.00 12.43 3.59 51 ER8a ExonRegion 0 50.66 3.48 21.83 10.56 23.77 8.19 11.33 30.04 104.42 17.68 112.63 514.34 444.17 238.52 212.52 331.66 341.60 0.66 0.00 0.51 253.67 476.54 427.27 52 E8_Da KnownBoundary 0 62.23 3.22 17.74 6.86 15.79 12.95 5.70 26.90 107.17 9.75 99.29 325.01 357.12 238.86 201.50 234.90 317.16 0.00 0.00 0.00 253.16 349.28 297.58 53 ER8b ExonRegion 0 20.32 1.59 15.14 6.77 7.20 4.43 3.53 10.61 46.42 11.69 56.88 184.82 203.40 150.16 182.89 165.62 175.88 0.31 0.00 0.61 178.36 200.18 223.99 54 E8b_E9a KnownJunction 1 3.78 0.00 18.75 11.29 7.89 5.56 5.79 9.98 42.10 19.50 95.81 269.19 150.96 138.74 205.82 208.41 248.81 0.00 0.00 0.00 205.78 201.52 228.86 55 E8b_E10a NovelJunction 0 10.22 0.00 6.36 0.00 0.00 0.00 0.00 6.74 25.32 2.98 6.95 12.15 0.00 11.77 27.32 38.96 20.01 0.00 0.00 0.00 13.65 14.51 20.83 56 I8 Intron 0 15.04 0.85 0.76 0.85 1.68 0.00 1.38 0.00 1.92 0.36 1.21 9.16 8.07 6.47 11.70 8.08 10.35 0.00 0.00 0.00 4.61 7.84 9.21 57 I8_SR1 SilentIntronRegion 0 15.17 0.86 0.77 0.86 1.69 0.00 1.40 0.00 1.94 0.36 1.22 9.23 8.14 6.52 11.78 8.14 10.43 0.00 0.00 0.00 4.64 7.90 9.28 58 E9_Aa NovelBoundary 0 26.67 0.00 2.66 2.06 0.00 0.00 0.00 0.00 9.87 0.00 2.11 18.46 8.12 16.48 13.72 0.00 25.62 0.00 0.00 0.00 11.55 16.96 8.54 59 ER9a ExonRegion 0 28.25 3.22 15.68 13.88 12.61 10.53 4.26 16.63 44.67 23.06 90.08 258.43 186.80 153.83 182.15 181.14 228.22 0.54 0.00 0.84 211.44 233.05 254.03 60 E9a_E10a KnownJunction 0 20.15 0.00 29.45 17.45 16.21 4.88 5.52 26.00 69.79 21.11 64.28 300.25 231.48 104.42 236.85 296.85 216.27 2.57 0.00 0.00 197.81 437.39 370.82 61 I9 Intron 0 11.03 0.76 0.68 2.02 1.66 1.37 1.15 0.96 10.73 2.33 4.80 11.91 8.94 13.31 31.98 40.93 14.34 0.00 0.00 0.26 11.21 20.17 63.41 62 I9_SR1 SilentIntronRegion 0 11.11 0.76 0.68 2.03 1.67 1.38 1.16 0.97 10.81 2.35 4.83 12.00 9.00 13.40 32.21 41.23 14.43 0.00 0.00 0.27 11.29 20.31 63.87 63 E10_Aa NovelBoundary 0 68.16 0.00 3.67 0.00 7.47 0.00 4.46 2.30 11.05 1.26 6.74 11.70 0.00 14.77 42.52 30.76 21.79 0.00 0.00 0.00 11.92 43.11 31.50 64 ER10a ExonRegion 0 35.70 3.67 26.64 13.98 22.12 6.38 6.98 20.27 60.63 18.49 75.20 246.62 209.79 174.00 240.27 217.14 212.27 0.82 1.09 1.63 212.92 307.32 298.55 65 E10_Da KnownBoundary 1 33.41 2.76 25.13 22.31 62.82 10.45 1.68 5.71 62.33 20.01 91.13 341.51 291.05 183.12 222.26 101.60 275.55 0.00 0.00 0.00 192.37 394.28 180.20 66 ER10b ExonRegion 0 115.25 8.12 13.45 20.57 50.44 10.64 16.87 14.55 33.78 15.69 33.89 278.62 202.98 79.31 180.95 86.68 100.12 0.12 0.72 0.55 47.79 276.97 129.95 67 E10_Db KnownBoundary 1 173.51 0.00 1.15 8.19 47.96 13.91 6.93 4.31 8.80 0.00 2.68 67.07 58.11 65.16 256.51 54.09 7.20 0.00 0.00 0.00 19.77 168.33 59.07 68 ER10c ExonRegion 1 153.56 5.76 21.23 29.18 55.48 14.17 18.15 23.53 33.47 17.68 35.28 218.42 154.47 61.83 281.45 75.95 105.72 0.00 0.00 1.15 34.21 263.92 123.39 69 ER10d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 4.33 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00