Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP1-102H19.2 Gene 0 13.74 13.78 13.40 19.11 18.88 14.14 13.83 4.85 12.47 10.77 6.73 14.55 22.70 10.08 8.59 10.91 6.83 6.06 5.99 11.61 8.29 2.35 2.21 2 448282 Transcript 0 6.27 6.93 6.20 9.57 7.44 8.80 6.73 2.52 5.19 4.74 3.82 7.44 11.55 5.53 5.78 5.93 4.06 3.43 4.12 6.63 5.95 1.03 1.81 3 ER1a ExonRegion 0 10.27 9.64 10.95 17.59 14.78 11.60 14.20 4.25 6.50 6.24 5.52 9.20 15.20 8.69 4.11 11.07 7.62 4.53 5.65 9.04 10.83 0.89 3.01 4 E1_Da NovelBoundary 0 24.30 5.13 9.61 7.52 15.53 21.69 12.81 13.68 1.30 3.98 0.00 0.00 33.11 2.47 4.45 3.93 0.00 5.51 17.51 9.33 7.72 6.25 3.93 5 E1a_E2a KnownJunction 0 5.78 6.71 8.46 12.72 0.00 16.07 6.18 2.01 3.99 5.13 2.26 0.00 0.00 0.00 8.90 3.67 4.39 6.96 9.32 9.14 9.02 0.00 4.35 6 E2_Aa NovelBoundary 0 14.30 15.66 9.58 11.49 16.89 5.51 4.42 0.00 12.18 11.82 0.00 7.20 7.63 4.53 4.45 0.00 0.00 6.01 3.48 6.33 9.27 0.00 0.00 7 ER2a ExonRegion 0 23.66 23.25 23.83 31.97 32.33 22.42 21.61 6.92 22.84 19.71 8.42 18.31 28.39 10.76 10.71 14.14 8.46 10.05 8.37 18.30 9.47 3.84 2.16 8 E2_Da NovelBoundary 1 3.63 24.07 23.89 35.29 43.89 16.98 27.69 8.58 22.16 20.82 2.68 0.00 42.37 2.12 11.37 20.17 4.68 4.15 3.76 16.68 2.59 0.00 4.35 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 1.73 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 10 I2 Intron 0 11.06 13.87 18.10 23.38 12.40 9.89 9.38 6.77 12.75 11.53 2.19 7.29 12.18 4.48 6.13 7.47 4.81 5.02 4.67 10.57 4.35 2.30 2.92 11 I2_SR1 SilentIntronRegion 0 7.64 14.24 12.64 21.67 10.85 8.77 9.48 4.62 11.47 10.62 2.30 6.27 10.83 3.01 4.81 7.01 4.33 3.39 4.56 9.05 2.71 2.14 2.73 12 I2_AR1 ActiveIntronRegion 0 14.52 24.34 18.27 23.27 16.44 9.37 10.41 7.93 14.86 16.05 1.29 7.96 5.56 3.76 3.15 6.32 4.05 5.29 5.71 11.90 6.24 2.43 2.97 13 I2_SR2 SilentIntronRegion 0 13.59 30.41 37.36 37.15 17.08 17.38 11.19 12.18 29.56 19.48 2.27 10.52 6.49 6.38 3.37 4.39 6.72 6.51 6.41 17.14 0.95 8.96 3.65 14 I2_AR2 ActiveIntronRegion 0 24.38 22.88 46.39 38.98 22.70 17.68 16.54 17.18 27.67 22.96 1.61 11.19 25.02 7.21 9.93 7.34 7.66 7.72 4.02 17.37 5.20 2.17 2.10 15 I2_AR3 ActiveIntronRegion 0 57.86 22.11 46.42 38.00 25.26 19.36 15.45 17.71 15.89 17.22 2.78 18.42 19.50 6.31 15.61 8.55 7.39 4.26 7.64 11.57 3.17 2.01 2.82 16 I2_AR6 ActiveIntronRegion 0 4.33 6.01 9.47 13.75 5.23 11.17 7.70 10.21 9.71 9.64 2.20 5.71 30.49 7.60 1.58 1.89 6.75 3.28 5.36 6.96 2.50 1.42 5.07 17 I2_AR7 ActiveIntronRegion 0 6.18 9.40 12.10 20.08 7.92 4.50 10.11 5.22 12.80 7.21 2.41 6.78 13.28 2.55 4.33 6.82 5.35 1.92 2.51 7.95 4.26 3.95 1.39 18 I2_SR5 SilentIntronRegion 0 4.53 8.35 14.68 20.77 10.15 10.00 6.85 4.36 9.44 8.91 3.54 5.83 10.04 6.41 8.89 13.09 5.06 10.63 6.94 12.42 9.32 2.11 5.39 19 E3_Aa NovelBoundary 0 567.21 373.62 99.79 96.99 351.95 271.60 453.37 108.11 94.91 85.34 155.57 92.43 114.44 67.75 147.23 498.25 353.72 181.57 323.59 418.08 185.08 164.35 483.67 20 ER3a ExonRegion 0 0.00 1.10 0.18 2.98 1.42 1.36 0.76 2.74 3.02 0.98 4.11 17.23 28.43 13.59 10.91 4.80 3.61 2.50 3.38 3.52 6.34 1.11 3.12 21 E3_Da NovelBoundary 0 3918.47 3627.77 5791.66 5785.21 3210.10 2219.52 4653.29 5880.78 5354.11 5294.17 1416.83 719.33 957.24 711.88 1225.05 3124.31 3316.03 6331.71 2333.71 4346.18 2394.61 1349.71 3506.80 22 E3a_E4a KnownJunction 0 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 23 E4_Aa NovelBoundary 0 6.82 8.95 20.52 22.87 16.72 28.28 12.01 1.93 8.22 6.58 0.00 0.00 0.00 6.65 17.18 19.40 9.54 12.77 18.17 3.26 2.35 2.88 16.05 24 ER4a ExonRegion 0 4.21 5.39 0.00 0.00 3.54 7.29 4.38 1.71 0.00 1.13 6.40 7.37 8.83 5.67 5.84 7.80 4.37 0.00 2.11 4.06 2.92 1.38 0.00 25 IG47 Intergenic 0 10.04 14.36 20.71 33.46 12.45 12.61 8.98 8.50 12.36 9.55 4.08 13.04 18.69 8.71 6.62 11.37 7.71 4.74 4.89 12.87 4.19 4.15 4.37 26 IG47_SR1 SilentIntergenicRegion 0 7.97 7.41 13.26 30.11 11.77 18.58 9.59 10.68 13.33 7.75 4.40 5.98 9.35 13.02 8.35 15.35 15.62 11.72 4.19 11.32 6.73 7.15 10.60 27 IG47_AR2 ActiveIntergenicRegion 0 10.42 11.91 28.27 40.74 14.42 18.42 12.92 10.23 14.98 13.86 6.52 14.47 17.88 11.45 5.15 12.82 10.61 5.86 5.50 19.72 3.64 4.73 6.49 28 IG47_SR2 SilentIntergenicRegion 0 10.40 16.18 19.27 31.87 11.97 10.06 7.67 7.80 11.57 8.44 3.30 13.71 20.15 7.39 6.90 10.73 5.91 3.55 4.88 10.81 4.06 3.66 2.91