Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PNRC1 Gene 0 867.55 208.86 237.06 161.73 580.13 287.24 194.66 275.83 229.90 225.55 362.31 411.61 196.25 227.35 266.46 263.49 175.69 44.98 131.86 89.48 247.21 1132.40 684.82 2 369472 Transcript 0 64.59 14.49 10.24 7.42 37.83 67.07 14.92 12.62 9.54 13.70 50.19 0.00 2.18 24.94 40.98 84.12 23.99 17.69 18.71 16.79 60.17 119.65 240.12 3 336032 Transcript 0 629.00 160.63 164.79 109.54 422.89 259.21 145.30 210.11 172.39 177.80 283.09 236.92 132.69 223.70 212.84 229.72 150.47 51.73 103.99 77.56 253.42 748.33 625.77 4 354922 Transcript 0 50.14 12.44 15.94 9.75 33.39 24.21 22.64 12.02 13.24 14.12 42.57 50.20 14.71 40.79 26.70 17.01 23.01 3.35 3.20 8.74 51.50 55.75 106.12 5 ER1a ExonRegion 1 129.18 28.98 17.81 14.85 71.67 131.71 29.84 25.25 17.29 16.96 100.37 0.00 4.36 49.88 81.96 168.24 47.98 35.37 37.43 33.59 117.19 233.06 480.25 6 ER1b ExonRegion 1 147.48 31.19 67.83 52.31 87.81 157.11 37.54 86.70 74.09 67.19 291.09 27.46 23.98 130.73 127.21 226.70 140.28 73.10 84.58 68.89 410.64 304.94 771.87 7 E1_Da KnownBoundary 1 0.00 14.87 159.04 97.92 3.23 20.44 3.93 164.58 151.39 135.84 289.92 82.08 19.97 315.74 242.41 310.43 186.16 113.25 112.94 123.30 403.65 741.29 988.59 8 E1a_E3a KnownJunction 0 0.00 0.00 2.66 0.00 3.99 2.44 0.00 0.00 1.79 10.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 6.25 0.00 9 ER1c ExonRegion 1 87.52 54.47 87.85 32.54 93.60 121.17 45.16 83.94 84.43 93.09 222.95 60.92 42.53 208.27 157.71 195.05 125.07 60.28 69.44 56.61 315.60 367.48 599.15 10 E1b_E3a KnownJunction 1 316.80 181.42 118.48 84.94 360.02 346.85 151.26 202.86 170.31 172.61 333.77 81.33 88.14 306.55 160.21 272.24 203.37 78.31 112.57 90.31 371.84 460.05 809.33 11 I1 Intron 0 35.17 10.04 15.59 13.50 34.70 16.67 15.89 18.07 20.64 16.64 23.02 27.20 6.91 19.49 13.93 12.76 11.27 4.41 6.03 9.23 54.20 82.03 114.27 12 I1_AR1 ActiveIntronRegion 0 38.80 11.14 17.11 14.98 38.30 18.15 17.52 20.03 22.75 18.21 24.85 30.17 7.67 20.87 14.91 14.00 12.33 4.78 6.47 10.20 57.64 90.67 123.74 13 E2_Aa NovelBoundary 0 130.17 15.66 30.81 19.48 55.18 11.58 34.05 32.00 33.10 34.44 71.60 18.46 27.92 41.38 45.74 31.44 63.49 4.15 4.80 7.61 149.38 170.47 248.75 14 ER2a ExonRegion 0 79.47 19.49 26.45 19.50 59.32 34.69 32.08 19.10 24.68 19.41 53.51 44.59 15.78 42.27 28.30 22.31 28.91 6.70 6.39 14.92 103.00 108.87 176.73 15 E2_Da NovelBoundary 0 109.35 20.92 37.28 36.36 76.66 79.44 35.29 39.51 34.32 24.20 45.80 24.61 6.82 16.95 13.23 32.90 8.32 11.23 3.58 14.83 125.78 103.79 202.65 16 E2a_E3a KnownJunction 0 20.82 5.39 5.44 0.00 7.47 13.74 13.20 4.93 1.79 8.84 31.64 55.82 13.64 39.32 25.09 11.71 17.11 0.00 0.00 2.56 0.00 2.63 35.51 17 I2 Intron 0 83.16 14.45 25.70 18.96 64.88 36.03 23.25 27.63 23.34 16.67 30.70 38.86 12.42 19.26 13.13 14.50 12.88 5.12 7.97 11.56 50.67 119.61 158.79 18 I2_SR1 SilentIntronRegion 0 60.19 12.35 29.56 21.75 61.06 37.46 21.67 33.69 29.29 21.72 37.12 43.83 13.90 24.37 12.11 19.09 13.33 7.43 7.71 13.31 66.65 124.85 195.71 19 E3_Aa NovelBoundary 0 285.09 36.97 47.10 56.87 167.66 148.10 48.62 64.36 38.05 38.90 28.48 61.82 20.29 12.24 24.85 12.22 20.76 11.52 0.00 17.51 32.62 174.27 136.67 20 ER3a ExonRegion 0 927.41 366.54 389.01 255.90 851.36 489.18 317.48 456.63 400.10 383.21 730.50 654.27 312.82 448.06 358.75 489.87 379.05 82.36 252.11 149.68 488.96 1865.99 1246.52 21 E3_Da KnownBoundary 0 1172.58 509.32 525.20 367.85 1348.22 746.62 530.84 529.40 530.32 424.96 734.66 903.59 416.04 498.03 573.21 521.06 366.25 39.09 272.85 177.50 486.93 2441.32 1215.23 22 ER3b ExonRegion 0 1638.28 476.23 447.75 328.92 1273.24 537.75 451.62 520.84 451.27 394.53 538.26 876.19 383.85 367.87 495.86 342.54 235.68 45.83 185.96 146.59 226.94 2064.87 904.94 23 E3_Db KnownBoundary 1 2797.90 647.12 492.35 383.93 1557.47 554.28 514.41 611.02 436.11 445.69 273.39 694.28 395.10 347.58 669.26 365.55 94.81 16.29 160.95 152.12 93.22 2711.54 584.23 24 ER3c ExonRegion 0 1482.70 246.00 288.05 211.14 815.06 309.62 239.49 343.52 262.42 267.71 292.55 568.53 267.40 156.29 320.59 221.88 122.98 16.59 129.95 85.75 72.84 1417.46 468.83 25 IG19 Intergenic 0 10.12 28.38 10.89 18.29 16.24 8.44 8.69 14.21 11.70 10.78 1.16 2.47 2.10 0.52 1.45 0.80 1.19 3.16 4.35 11.70 1.82 6.62 16.24 26 IG19_AR1 ActiveIntergenicRegion 0 2.33 5.44 7.75 9.62 9.61 3.44 7.57 0.00 3.88 3.30 1.66 7.51 0.00 0.00 4.26 0.00 1.68 2.07 0.00 11.46 12.14 4.46 17.62 27 IG19_SR1 SilentIntergenicRegion 0 18.65 12.19 15.15 21.88 13.32 7.63 10.95 10.98 8.79 6.52 1.67 5.66 2.85 0.92 2.31 1.18 3.85 3.02 6.70 11.72 3.22 10.07 29.76 28 IG19_AR2 ActiveIntergenicRegion 0 4.55 5.91 7.56 9.94 5.88 3.22 3.39 6.57 7.44 3.10 1.05 0.94 0.84 0.44 1.12 0.97 0.36 1.29 2.08 4.87 2.40 6.30 19.93 29 IG19_SR2 SilentIntergenicRegion 0 5.08 24.59 7.20 19.16 14.26 7.97 7.99 13.56 12.01 12.17 0.80 1.53 2.40 0.35 1.19 0.62 0.00 3.68 3.47 10.25 0.46 6.61 10.31 30 IG19_AR4 ActiveIntergenicRegion 0 10.59 86.29 15.11 22.28 28.56 9.68 12.10 29.47 19.66 18.09 1.86 1.47 1.19 0.33 1.23 0.86 0.64 2.13 4.60 17.58 1.69 4.01 9.33 31 IG19_SR3 SilentIntergenicRegion 0 10.24 26.70 9.43 14.42 23.06 15.22 7.42 13.60 12.67 16.18 0.21 0.47 2.49 0.43 0.66 0.32 0.00 5.44 4.11 14.91 0.47 3.59 6.95