Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UBE2CBP Gene 0 10.12 18.50 23.71 14.89 10.48 24.96 9.93 9.64 8.58 8.06 22.38 16.64 12.35 15.78 18.67 9.47 11.88 9.74 11.63 12.09 8.60 10.82 8.81 2 369746 Transcript 0 1.61 5.78 7.71 5.77 2.89 1.80 4.34 5.31 3.07 1.90 1.51 8.72 6.88 1.38 1.03 1.33 1.62 1.25 1.16 6.18 0.43 0.36 1.15 3 392921 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 237186 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 369747 Transcript 0 1.19 2.13 1.05 1.58 0.00 2.71 0.00 0.00 1.06 0.79 0.24 1.08 0.16 0.00 0.93 0.00 0.00 0.00 1.11 0.75 0.00 1.46 0.00 6 369745 Transcript 0 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.94 0.90 0.97 1.94 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 7 449541 Transcript 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 430071 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 369749 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 10.64 15.77 8.51 0.20 8.29 73.96 20.87 0.77 1.48 1.91 17.12 0.00 0.00 11.06 6.03 15.96 18.24 12.79 10.20 5.52 4.02 5.43 17.54 11 E1_Ab KnownBoundary 0 3.48 24.93 10.11 3.50 24.45 131.12 46.42 4.11 1.79 1.40 18.22 0.00 0.00 4.59 4.45 0.00 28.14 11.32 38.12 2.68 9.20 2.45 4.10 12 ER1b ExonRegion 0 2.40 14.13 8.77 2.12 9.86 41.31 20.17 2.77 2.31 4.20 7.48 0.11 0.00 1.20 6.80 0.00 8.95 9.43 20.87 1.96 8.00 0.71 2.63 13 E1_Da KnownBoundary 0 0.00 3.35 8.16 5.23 4.33 13.80 3.67 2.55 1.48 4.54 4.90 0.00 0.00 0.00 9.64 0.00 4.68 10.24 0.00 3.26 5.99 0.00 0.00 14 E1a_E3a KnownJunction 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1c ExonRegion 0 5.85 1.34 11.77 3.48 4.15 5.69 0.73 3.82 1.14 4.59 23.25 2.05 5.55 9.36 17.48 1.80 12.16 10.70 5.36 5.10 4.41 4.93 4.17 16 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 0.00 1.89 1.79 1.34 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.00 0.00 0.00 17 E1b_E3a KnownJunction 0 10.15 0.00 17.47 4.03 0.00 2.50 0.00 3.94 1.10 1.67 34.69 6.30 13.64 14.42 17.80 4.10 25.06 13.51 8.56 7.80 2.41 12.55 12.12 18 E2_Aa NovelBoundary 1 237.08 174.77 136.22 165.35 132.00 55.99 164.11 143.27 123.47 107.07 60.07 101.58 101.78 86.41 46.97 139.71 186.63 128.59 134.50 115.24 96.50 44.39 125.14 19 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.59 1.20 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2_Da NovelBoundary 0 373.70 230.29 366.49 491.61 305.43 182.62 325.21 442.94 403.96 344.59 59.59 47.57 59.25 38.08 48.71 308.21 145.86 521.77 249.14 239.18 68.14 85.30 209.99 21 ER3a ExonRegion 1 2.68 7.80 39.42 10.45 1.90 10.29 8.86 9.60 13.74 7.26 64.86 11.24 3.32 35.60 30.58 31.87 39.06 18.30 30.13 26.09 20.72 28.59 29.53 22 E3_Da KnownBoundary 1 7.56 25.13 31.37 19.84 11.54 13.06 12.28 14.66 10.42 15.18 82.76 6.30 18.51 39.61 31.89 22.81 31.79 17.70 12.99 31.70 31.01 17.39 23.82 23 ER3b ExonRegion 0 7.08 34.96 39.00 16.06 17.32 84.44 24.21 16.83 10.93 9.65 49.23 11.26 14.18 23.65 30.54 17.02 19.70 27.41 30.27 19.83 23.32 19.19 15.20 24 E3b_E4a KnownJunction 0 13.56 42.95 60.91 20.78 31.32 104.26 28.84 15.44 16.35 14.29 92.76 44.86 28.73 38.91 41.91 20.76 29.64 17.87 36.14 30.23 37.38 38.52 28.68 25 ER4a ExonRegion 0 21.51 34.93 41.99 16.34 23.02 67.23 17.12 18.03 13.22 11.37 56.01 28.74 20.25 39.35 33.95 20.80 26.55 17.97 25.20 28.03 33.59 28.87 14.17 26 E4a_E6a KnownJunction 0 20.82 19.80 49.05 10.49 3.57 25.84 13.07 14.38 15.39 10.45 25.53 18.46 12.99 24.90 22.99 27.17 25.99 12.15 13.37 28.32 11.00 24.13 4.35 27 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5b ExonRegion 0 0.00 0.00 0.44 0.58 3.38 0.00 0.72 0.00 0.00 0.49 1.30 3.34 4.38 3.57 0.00 0.00 4.65 0.00 5.33 0.38 0.00 1.78 0.00 29 E5a_E6a KnownJunction 0 0.00 0.00 1.57 1.90 7.39 0.00 2.16 0.00 0.00 1.34 2.58 0.00 6.82 0.00 0.00 0.00 4.21 0.00 0.00 2.68 0.00 0.00 0.00 30 E6_Aa NovelBoundary 0 0.00 3.03 9.93 1.93 7.13 0.00 2.03 6.33 2.40 1.18 6.84 20.11 13.64 7.83 5.07 0.00 0.00 2.20 24.00 9.20 0.00 0.00 0.00 31 ER6a ExonRegion 0 16.93 36.24 39.27 13.67 18.14 27.55 17.82 16.12 13.38 16.80 46.55 39.76 24.22 39.55 31.84 23.80 37.65 20.47 28.29 21.25 36.79 20.84 15.97 32 E6_Da KnownBoundary 0 10.74 29.53 27.29 12.49 37.86 28.34 26.81 20.95 11.02 8.06 42.59 18.76 19.32 39.79 27.44 22.73 12.72 4.02 9.22 21.41 20.82 14.88 16.73 33 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E6_Db KnownBoundary 0 6.82 31.77 29.57 5.89 11.97 29.53 6.76 7.56 8.83 7.09 44.38 12.30 6.66 9.59 8.90 36.40 13.46 6.80 30.49 16.17 20.26 17.88 4.18 35 E6b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6b ExonRegion 0 10.78 44.37 48.01 14.87 27.97 44.68 23.71 21.53 16.51 14.18 63.79 59.83 40.08 50.05 29.54 41.88 23.71 10.75 25.48 23.21 36.66 25.76 13.88 37 ER6c ExonRegion 0 23.11 45.84 41.76 21.61 19.41 47.94 11.41 17.28 13.90 18.77 49.52 33.74 26.43 31.53 32.79 29.67 26.83 20.65 29.07 26.04 22.49 28.47 15.10 38 E6_Dc NovelBoundary 0 0.00 2.89 6.56 0.00 12.56 10.90 8.39 2.42 1.36 3.22 9.11 6.30 6.82 0.00 5.69 0.00 7.67 0.00 0.00 2.94 0.00 0.00 0.00 39 E6c_E8a KnownJunction 0 34.38 57.10 36.81 27.40 11.80 57.01 10.38 14.95 11.02 22.03 39.75 18.61 32.30 29.20 15.20 7.78 38.80 26.57 4.61 30.10 11.49 15.31 19.80 40 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E8_Aa NovelBoundary 0 0.00 5.66 13.39 5.29 0.00 2.90 2.25 2.55 2.95 1.32 0.00 12.60 6.82 0.00 5.93 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 43 ER8a ExonRegion 0 17.81 28.99 35.50 21.53 21.29 41.21 19.05 17.19 12.86 16.14 52.30 38.59 23.18 34.62 27.56 17.11 34.28 20.56 9.24 14.56 16.94 23.28 16.70 44 E8_Da NovelBoundary 0 3.78 0.00 15.79 15.98 7.47 4.88 2.12 7.97 3.30 14.16 7.42 5.85 0.00 4.77 0.00 4.36 4.02 0.00 3.76 14.89 0.00 0.00 0.00 45 E8a_E9a KnownJunction 0 28.45 12.56 30.69 12.19 28.69 57.41 10.47 18.61 18.98 10.15 70.54 31.06 13.64 38.32 43.27 20.68 37.96 11.69 14.02 5.88 25.95 23.88 8.71 46 I8_AR1 ActiveIntronRegion 1 6.79 13.36 9.52 11.29 7.57 3.99 8.72 3.65 1.70 3.83 0.92 16.07 11.40 3.78 2.04 2.16 4.74 1.34 1.04 5.69 0.53 1.01 0.00 47 I8_SR1 SilentIntronRegion 0 5.50 16.64 11.16 15.35 6.17 3.41 8.95 4.70 4.16 3.29 1.76 7.44 8.28 1.33 2.96 3.06 3.80 1.53 4.62 6.06 1.57 1.24 3.02 48 E9_Aa NovelBoundary 0 11.34 16.64 15.67 11.02 9.68 0.00 6.76 0.00 5.44 3.95 4.69 0.00 6.82 0.00 5.19 0.00 0.00 6.80 0.00 0.00 3.15 0.00 3.67 49 ER9a ExonRegion 0 29.51 39.16 33.87 30.80 18.62 45.92 14.77 16.05 14.70 17.06 50.26 52.94 31.29 52.81 32.20 24.88 25.18 16.21 22.89 18.94 19.14 27.77 28.19 50 E9a_E10a KnownJunction 0 45.12 57.49 37.37 45.72 8.40 46.68 20.54 15.98 8.83 18.35 37.75 45.91 13.64 57.92 46.73 33.07 17.95 17.53 24.00 26.85 7.97 32.88 24.41 51 ER10a ExonRegion 0 24.56 42.11 43.93 29.38 20.50 55.35 20.04 11.67 15.23 14.86 52.44 39.96 31.84 31.26 43.36 20.64 23.29 25.99 17.10 16.87 16.98 25.63 15.20 52 E10a_E11a KnownJunction 0 24.82 50.85 67.44 34.33 20.12 93.81 40.10 20.74 7.84 12.33 58.49 43.96 25.65 46.32 48.09 36.14 22.25 25.25 50.92 28.95 17.42 19.84 27.83 53 ER11a ExonRegion 0 35.90 47.64 65.71 37.84 27.48 56.33 26.48 17.23 19.66 18.25 59.07 40.47 42.35 47.42 55.27 24.05 31.40 25.98 32.26 22.51 22.47 26.63 30.83 54 E11_Da KnownBoundary 0 3.26 6.05 11.32 4.69 7.13 0.00 7.68 10.19 5.70 3.71 0.00 6.30 6.49 0.00 0.00 0.00 4.77 7.05 0.00 2.62 0.00 2.33 0.00 55 E11a_E12a KnownJunction 0 52.45 21.18 56.92 31.60 8.06 58.72 30.52 6.61 17.71 17.73 55.38 30.01 32.47 43.97 46.97 23.41 21.22 16.62 22.49 11.63 25.51 31.90 34.40 56 ER11b ExonRegion 0 1.61 5.78 7.71 5.77 2.89 1.80 4.34 5.31 3.07 1.90 1.51 8.72 6.88 1.38 1.03 1.33 1.62 1.25 1.16 6.18 0.43 0.36 1.15 57 E12_Aa NovelBoundary 0 0.00 17.30 7.42 6.86 7.22 7.72 1.77 4.60 6.19 4.03 0.00 6.30 0.00 0.00 0.00 4.27 0.00 8.91 0.00 13.10 0.00 0.00 0.00 58 ER12a ExonRegion 0 31.18 38.55 47.45 32.90 15.59 59.21 18.60 12.41 16.13 18.23 47.31 28.50 24.63 44.51 55.37 22.96 25.03 25.16 26.19 21.72 23.05 24.75 26.35 59 E12a_E13a KnownJunction 0 19.71 48.41 31.40 24.04 19.19 89.49 14.66 12.94 9.64 17.03 36.75 12.00 6.82 44.21 39.93 19.14 15.71 21.14 50.17 23.27 5.13 30.56 28.08 60 E13_Aa NovelBoundary 0 3.70 3.35 7.95 1.80 7.13 37.99 0.00 1.85 3.15 2.82 9.79 0.00 0.00 4.71 0.00 0.00 4.02 2.36 0.00 3.26 0.00 0.00 0.00 61 ER13a ExonRegion 0 18.71 31.53 47.43 35.92 22.33 47.29 11.37 18.45 19.39 18.37 41.31 21.49 12.16 25.92 45.19 12.80 15.00 15.21 21.02 19.37 8.65 22.92 12.27 62 E13_Da KnownBoundary 0 3.78 5.85 2.69 5.13 0.00 2.10 0.00 1.85 5.53 4.41 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.78 0.00 63 ER13b ExonRegion 0 2.38 4.26 2.09 3.16 0.00 5.42 0.00 0.00 2.13 1.58 0.48 2.16 0.33 0.00 1.85 0.00 0.00 0.00 2.21 1.51 0.00 2.92 0.00