Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM46A Gene 0 17.69 3.25 5.66 2.53 9.76 3.61 3.04 4.59 7.03 2.36 9.24 5.42 1.75 1.06 6.65 0.32 0.80 4.50 5.71 2.39 80.17 65.71 34.05 2 369756 Transcript 0 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.86 0.00 0.00 0.00 0.16 0.00 0.00 0.32 1.37 0.40 3.66 0.36 0.53 3 392940 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 4 437923 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 369754 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.89 2.40 0.00 0.00 0.93 0.00 0.00 0.00 2.63 0.14 0.06 5.45 3.06 5.91 6 320172 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 412306 Transcript 0 1.18 0.00 0.00 0.00 0.00 0.00 0.07 0.71 0.27 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 7.41 2.34 0.00 8 423467 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.32 0.00 0.00 0.64 2.74 0.80 1.82 0.72 1.06 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 11 E1_Ac KnownBoundary 0 5.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 4.45 0.00 0.00 2.28 4.71 0.00 0.00 0.00 7.60 12 ER1b ExonRegion 0 6.35 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 4.51 0.00 0.00 0.00 2.90 0.00 0.00 1.85 6.37 2.13 9.55 2.08 5.87 13 ER1c ExonRegion 0 2.92 0.00 0.00 0.75 1.94 4.04 1.94 0.00 2.03 1.07 5.74 0.00 1.42 0.98 5.05 0.00 1.21 0.68 7.95 2.71 125.17 22.75 32.79 14 E1_Da KnownBoundary 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.46 2.69 3.59 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.50 0.00 0.00 16 ER1d ExonRegion 0 0.29 0.00 1.31 0.48 0.00 0.44 0.00 1.90 3.87 1.44 8.61 0.00 0.03 1.66 5.45 0.00 0.00 0.60 5.54 4.10 129.76 26.39 23.41 17 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 2.32 0.00 0.00 2.47 0.00 0.00 0.00 6.18 0.00 0.00 3.15 5.39 23.73 18 E1b_E2a KnownJunction 0 0.00 0.00 0.00 1.93 0.00 2.78 0.00 0.00 2.92 2.66 5.37 0.00 0.00 0.00 8.90 0.00 0.00 0.00 12.61 2.75 22.12 13.41 39.01 19 ER1e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.33 2.42 0.00 0.00 1.86 0.00 0.00 0.00 2.99 0.29 0.12 8.05 3.49 8.49 20 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.45 2.37 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 2.84 2.63 3.33 21 ER2a ExonRegion 0 2.27 0.57 3.16 0.38 1.49 2.89 0.74 2.10 3.81 1.51 7.55 0.50 1.60 0.72 6.47 0.41 0.46 7.85 2.66 1.10 120.95 20.83 22.90 22 E2_Ab KnownBoundary 0 11.19 0.00 4.32 1.90 0.00 0.00 0.00 2.05 11.66 2.87 16.37 0.00 0.00 0.00 14.83 0.00 0.00 11.98 8.75 0.00 230.80 16.47 31.76 23 ER2b ExonRegion 0 7.82 0.55 3.49 0.14 0.09 1.59 0.00 1.08 5.19 4.39 8.52 0.00 0.00 0.00 10.47 0.00 0.00 4.89 6.26 2.31 207.11 40.75 26.33 24 E2_Ac KnownBoundary 0 22.52 3.03 2.93 0.00 0.00 5.34 0.00 2.22 4.72 4.78 7.26 0.00 0.00 0.00 10.75 0.00 0.00 5.80 7.91 2.75 261.13 58.60 25.10 25 ER2c ExonRegion 0 6.65 1.43 5.15 2.71 7.08 5.16 3.08 7.66 12.61 3.87 18.81 2.23 2.42 2.17 17.34 0.00 0.00 19.53 11.67 4.58 274.80 89.26 68.77 26 E2_Da NovelBoundary 0 0.00 0.00 3.40 0.00 0.00 0.00 0.00 2.55 6.16 0.00 2.16 0.00 0.00 0.00 4.45 3.59 0.00 2.57 0.00 5.82 45.04 8.70 11.44 27 E2a_E5a KnownJunction 0 0.00 3.35 2.69 1.90 19.78 7.95 2.25 6.08 10.91 7.17 18.32 0.00 0.00 4.59 5.19 0.00 0.00 18.03 17.60 5.94 310.80 162.51 161.68 28 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 I2 Intron 0 0.25 0.73 4.78 0.24 0.00 0.44 0.47 1.84 4.39 0.20 3.69 0.00 0.00 0.00 1.22 0.71 0.00 0.66 4.18 0.51 19.43 7.45 7.00 31 I2_SR1 SilentIntronRegion 0 0.00 1.26 3.56 0.00 0.00 0.00 0.12 1.31 3.10 0.00 2.74 0.00 0.00 0.00 1.12 0.00 0.00 1.11 2.51 1.13 24.84 8.98 2.51 32 I2_AR1 ActiveIntronRegion 0 0.37 0.49 5.37 0.35 0.00 0.64 0.63 2.09 5.00 0.30 4.14 0.00 0.00 0.00 1.27 1.03 0.00 0.46 4.95 0.23 17.13 6.81 9.06 33 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 34 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 I4_AR1 ActiveIntronRegion 0 1.97 0.00 2.04 0.00 1.98 1.36 0.00 0.62 3.78 0.00 0.93 1.17 0.00 0.85 1.01 0.00 0.00 3.02 2.35 0.37 16.32 7.10 7.86 36 E5_Aa NovelBoundary 0 3.78 3.35 3.02 0.00 0.00 0.00 1.77 2.55 12.01 0.00 7.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.80 8.63 16.05 37 ER5a ExonRegion 0 71.90 5.14 15.55 4.53 17.76 9.80 5.82 15.06 20.43 5.27 31.66 7.01 5.24 3.47 19.95 1.84 5.63 15.66 14.49 9.57 282.94 155.20 113.11 38 E5_Ab KnownBoundary 0 57.27 11.58 37.76 6.89 24.19 8.18 20.67 25.14 15.77 8.19 43.17 18.91 13.64 2.47 24.23 3.93 4.21 20.64 4.80 6.46 391.67 135.88 110.03 39 ER5b ExonRegion 0 59.40 7.83 26.09 14.36 45.21 15.00 8.39 19.12 23.61 10.23 26.35 9.43 10.96 1.20 29.38 0.22 3.72 29.76 39.40 9.61 322.97 211.01 164.85 40 E5_Da KnownBoundary 0 26.75 9.21 25.10 13.35 15.03 22.88 4.20 12.12 37.41 12.60 32.53 12.30 0.00 0.00 9.64 3.25 3.65 30.51 43.86 2.94 386.85 130.49 159.89 41 ER5c ExonRegion 0 22.73 2.48 35.55 9.19 31.33 15.09 9.42 15.07 27.31 11.61 39.12 14.61 0.00 0.93 21.15 1.36 4.50 26.14 29.40 9.93 424.58 146.89 146.86 42 E5_Db KnownBoundary 0 14.15 3.35 27.73 8.69 10.87 14.59 0.00 21.56 34.84 17.84 34.22 18.61 0.00 2.12 14.46 0.00 4.58 30.18 20.89 18.22 409.15 93.32 90.48 43 ER5d ExonRegion 0 16.27 3.92 4.78 2.55 10.36 3.01 3.21 3.84 6.03 2.01 6.65 6.59 1.52 0.90 4.88 0.22 0.35 2.15 4.09 1.56 38.92 65.26 24.56 44 ER6a ExonRegion 0 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 4.93 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 9.17 2.94 0.00 45 E6a_E7a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.21 5.20 0.00 46 ER7a ExonRegion 0 0.19 0.00 0.00 0.00 0.00 0.00 0.28 1.02 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.26 1.22 0.00