Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LYRM2 Gene 0 24.04 29.86 23.54 22.32 25.13 35.70 27.24 22.59 27.72 27.60 17.81 31.42 22.94 28.02 30.07 25.08 40.13 20.57 29.56 35.43 15.51 28.15 23.22 2 195656 Transcript 0 126.25 197.21 118.18 95.98 132.93 168.97 151.52 90.13 111.08 133.98 79.55 235.42 163.94 133.11 133.27 69.61 146.60 48.42 82.66 152.42 34.48 149.67 43.42 3 412237 Transcript 0 2.46 1.27 2.79 4.08 2.19 8.24 2.29 4.72 8.52 2.60 2.39 0.72 0.19 1.91 1.27 0.97 4.05 5.71 1.20 2.32 2.24 2.55 2.11 4 431762 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 75.64 88.62 17.54 24.03 51.97 111.67 89.61 15.28 14.63 23.84 24.11 0.00 0.00 51.89 49.93 64.45 57.33 62.43 97.07 50.95 34.33 36.19 71.87 6 ER1b ExonRegion 0 282.46 276.10 75.28 75.73 154.52 334.83 252.70 74.52 80.98 96.29 97.00 5.31 9.70 172.49 196.96 193.19 277.58 187.76 356.54 226.93 144.04 138.22 271.04 7 E1a_E2a KnownJunction 0 235.89 197.73 128.97 121.10 119.02 242.53 211.63 107.45 123.90 149.00 65.49 6.30 12.66 25.37 91.97 146.29 242.17 231.64 284.15 214.25 116.64 108.14 211.87 8 I1_AR2 ActiveIntronRegion 0 9.51 7.23 1.20 1.54 9.06 6.19 4.26 0.00 2.14 1.81 7.53 2.01 3.49 9.72 12.40 22.87 12.55 5.80 2.88 4.80 6.96 4.77 5.30 9 ER2a ExonRegion 0 53.33 41.55 97.58 72.95 52.62 63.78 47.92 88.13 88.53 111.57 80.63 70.81 61.30 100.75 116.34 123.29 219.40 68.24 125.18 148.17 100.64 81.26 91.18 10 E2_Da NovelBoundary 0 6.37 2.63 22.32 27.97 18.25 14.37 5.92 22.22 21.93 30.62 11.48 17.11 12.50 39.44 35.48 28.37 4.49 24.50 28.52 51.13 8.53 38.33 41.23 11 E2a_E3a KnownJunction 1 29.63 56.77 88.26 111.31 43.63 58.09 27.82 113.41 123.06 111.99 37.43 64.22 119.80 271.00 302.86 357.94 118.47 135.26 373.19 207.16 37.81 218.66 322.93 12 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I2_AR3 ActiveIntronRegion 0 14.82 0.00 3.53 1.36 4.09 0.00 8.33 2.44 6.03 4.12 6.03 2.55 1.93 7.64 1.71 2.97 0.00 1.09 2.06 0.38 0.00 5.02 4.84 14 E3_Aa NovelBoundary 0 13.56 0.00 7.48 5.59 8.66 5.51 14.53 6.49 11.00 4.65 0.00 0.00 0.00 7.77 8.90 0.00 0.00 1.66 0.00 6.14 3.15 11.39 3.16 15 ER3a ExonRegion 0 15.39 69.24 91.83 102.45 117.70 112.79 89.05 103.34 114.87 110.24 59.30 160.24 126.46 147.03 170.17 169.15 106.69 102.22 165.76 181.93 29.82 150.84 173.44 16 E3_Da KnownBoundary 0 27.49 197.46 152.86 110.18 236.08 303.18 304.15 116.53 132.43 148.17 72.54 327.56 162.49 150.16 174.42 94.68 155.21 36.85 90.73 172.90 34.72 199.87 45.58 17 ER3b ExonRegion 0 126.25 197.21 118.18 95.98 132.93 168.97 151.52 90.13 111.08 133.98 79.55 235.42 163.94 133.11 133.27 69.61 146.60 48.42 82.66 152.42 34.48 149.67 43.42 18 E3_Db NovelBoundary 0 244.12 147.34 128.91 89.93 113.75 77.91 123.92 102.64 138.14 174.36 79.07 280.89 102.59 161.22 136.97 131.16 171.01 53.97 55.81 148.03 46.02 123.08 56.00 19 I3 Intron 0 36.65 63.16 46.68 43.64 65.27 61.60 53.72 45.74 41.35 70.48 23.39 76.73 61.33 45.37 48.41 27.42 34.01 25.20 40.37 57.01 17.19 40.82 26.45 20 I3_AR1 ActiveIntronRegion 0 42.52 70.57 50.02 46.95 73.01 67.61 62.36 50.48 42.45 75.60 30.45 102.20 81.23 55.89 58.83 34.60 45.57 31.12 43.82 67.96 18.49 46.82 34.02 21 I3_SR1 SilentIntronRegion 0 33.64 39.06 6.05 9.42 31.90 64.37 58.75 3.41 4.88 9.06 17.92 18.55 7.67 45.75 55.50 31.50 28.42 24.96 71.73 33.82 30.65 27.60 29.18 22 I3_AR2 ActiveIntronRegion 0 27.80 54.65 46.74 42.90 57.44 51.80 39.45 43.79 44.40 70.44 12.94 44.01 36.83 28.71 31.06 15.57 16.45 15.88 30.91 42.75 13.43 33.09 14.13 23 Ix Intron 0 11.40 4.38 3.28 7.29 3.84 9.88 7.13 5.55 6.61 3.68 2.78 3.84 1.68 5.52 0.74 6.40 7.11 0.66 2.29 2.29 0.79 8.98 7.38 24 Ix_AR1 ActiveIntronRegion 0 11.48 4.41 3.30 7.35 3.87 9.95 7.18 5.59 6.66 3.71 2.80 3.87 1.70 5.56 0.74 6.45 7.16 0.67 2.30 2.31 0.80 9.04 7.44 25 Ix_SR2 SilentIntronRegion 0 6.05 5.33 3.46 3.64 4.33 7.52 7.53 5.86 9.13 1.71 3.26 3.00 0.93 3.32 1.45 3.48 11.60 6.11 2.20 3.67 3.11 7.40 7.59 26 Ix_AR1 ActiveIntronRegion 0 0.57 1.10 3.47 2.75 3.63 2.98 2.87 0.70 5.99 0.46 1.57 0.97 0.00 2.85 0.00 0.81 5.37 2.24 3.46 2.31 4.78 7.91 3.19 27 Ix Intron 0 2.72 3.26 2.34 5.54 0.43 9.71 4.03 3.30 7.97 0.55 2.48 1.72 0.00 2.30 0.00 2.38 14.81 6.78 1.02 2.39 2.12 3.01 6.59 28 Ix_SR1 SilentIntronRegion 0 3.06 3.67 2.64 6.24 0.48 10.95 4.55 3.73 8.99 0.62 2.80 1.93 0.00 2.59 0.00 2.69 16.70 7.64 1.15 2.69 2.39 3.39 7.44 29 ER4a ExonRegion 0 6.35 3.38 9.42 12.48 5.78 30.46 7.04 15.83 29.66 7.09 8.65 2.28 0.64 7.14 4.28 2.47 12.06 20.14 3.70 8.13 6.96 9.35 6.86 30 E4_Da NovelBoundary 0 17.71 10.06 19.48 27.04 15.53 51.45 24.51 30.48 40.48 9.24 11.95 6.30 0.00 10.30 0.00 11.19 22.53 28.69 8.75 3.20 7.91 18.98 16.22 31 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 Ix Intron 0 9.81 13.27 9.01 14.73 15.47 49.39 19.50 14.25 23.62 6.77 5.68 8.23 3.79 8.20 2.33 6.74 23.44 9.46 3.25 6.95 5.21 10.69 12.00 33 Ix_AR3 ActiveIntronRegion 0 4.45 13.61 8.92 11.05 7.89 21.86 6.52 9.08 16.16 4.92 3.28 3.47 1.11 5.41 2.46 6.01 12.51 11.43 2.56 6.18 10.84 6.12 11.43 34 Ix_SR3 SilentIntronRegion 0 7.87 8.75 10.18 14.80 18.93 41.30 18.28 18.22 28.10 5.68 5.48 12.94 4.28 8.44 0.00 9.85 25.33 6.53 9.21 5.80 9.65 7.86 13.79 35 Ix_AR2 ActiveIntronRegion 0 16.00 18.05 9.68 19.94 19.80 67.29 23.04 25.66 23.64 9.57 4.85 7.10 5.60 8.55 3.24 5.66 25.70 8.96 4.06 5.75 7.27 9.64 12.13 36 Ix_SR2 SilentIntronRegion 0 9.69 13.17 9.88 16.78 20.36 58.07 19.32 13.71 17.88 5.69 5.23 10.54 3.55 12.39 2.98 6.14 24.48 7.72 4.41 6.61 4.18 8.47 12.01 37 Ix_AR1 ActiveIntronRegion 0 10.59 12.87 9.77 17.58 17.18 46.96 22.48 14.08 28.57 7.41 8.01 4.83 2.65 7.01 2.26 5.56 30.25 10.60 3.63 8.41 4.27 12.26 9.88 38 Ix_SR1 SilentIntronRegion 0 7.29 11.43 7.37 9.08 10.83 46.59 18.69 8.68 22.99 5.68 4.94 11.83 4.59 8.08 1.90 8.52 18.18 9.32 1.19 6.84 2.95 12.64 13.83 39 Ix Intron 0 4.13 6.85 6.70 5.31 3.06 7.38 6.76 5.96 7.91 2.67 1.39 2.65 2.42 2.64 0.95 3.22 12.20 5.00 0.48 3.58 2.58 4.32 7.77 40 Ix_AR1 ActiveIntronRegion 0 0.67 4.09 3.86 3.50 2.26 2.83 6.21 3.90 3.96 0.01 0.62 0.00 0.76 3.05 0.00 5.93 19.04 6.95 1.02 3.54 3.73 2.07 8.04 41 Ix_SR2 SilentIntronRegion 0 2.65 5.13 13.29 4.48 2.59 7.98 5.32 4.01 6.90 2.57 2.89 0.59 0.00 0.99 0.79 1.15 6.41 5.89 3.34 6.28 1.70 0.89 7.32 42 E5_Aa NovelBoundary 1 6.15 5.72 8.84 8.79 7.30 43.21 1.94 12.32 42.01 3.84 14.90 17.41 0.00 7.06 0.00 15.89 59.28 13.35 0.00 20.39 14.02 2.27 21.43 43 ER5a ExonRegion 0 3.51 1.72 1.73 3.84 2.98 2.48 2.10 3.05 4.42 3.29 0.92 0.61 0.13 0.50 0.80 1.41 4.13 2.70 1.08 1.15 2.01 0.85 1.59