Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GUSBL2 Gene 0 39.86 50.64 56.56 55.63 45.42 41.13 46.20 57.47 53.13 58.31 50.07 21.61 24.73 48.22 48.31 40.82 33.27 61.73 36.14 70.63 24.00 24.81 39.68 2 450081 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 418765 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 449061 Transcript 0 2.58 2.84 4.32 10.83 1.26 3.86 0.88 3.11 6.65 9.28 3.84 5.85 1.14 1.97 1.61 8.29 0.53 11.46 3.60 4.68 5.94 2.00 4.57 5 399751 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 418368 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 422882 Transcript 0 34.85 63.92 35.59 46.42 45.33 27.81 45.43 53.33 45.62 47.86 31.11 34.78 40.86 29.03 30.83 35.83 27.30 47.06 27.46 77.64 15.98 21.22 31.86 8 ER1a ExonRegion 0 0.00 1.07 0.33 0.22 0.72 4.04 0.39 0.00 0.00 0.23 2.09 0.00 0.00 1.84 0.00 0.36 0.71 1.25 0.26 0.46 0.00 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 8.49 1.48 1.43 3.99 14.99 1.85 0.00 0.00 1.21 11.53 0.00 0.00 2.47 5.19 0.00 4.30 4.35 0.00 2.94 0.00 0.00 0.00 10 ER1b ExonRegion 1 12.83 19.15 4.24 14.34 18.95 43.40 37.82 1.55 5.04 4.35 29.64 0.00 0.00 39.08 11.06 26.13 23.11 10.55 30.00 12.28 25.53 9.55 37.44 11 E1_Ac KnownBoundary 1 126.17 179.31 35.98 91.73 153.91 216.52 208.76 21.60 32.75 41.02 112.40 0.00 0.00 138.27 18.79 171.58 130.34 102.27 131.20 51.96 153.70 61.23 221.94 12 ER1c ExonRegion 1 44.34 82.34 33.25 59.94 61.36 96.26 99.21 20.68 39.52 44.36 43.08 1.83 0.00 37.35 45.53 84.58 32.79 80.02 76.88 47.35 42.28 22.39 79.04 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 5.29 14.60 35.80 34.42 6.00 12.67 11.59 19.96 36.42 34.69 29.93 3.48 0.43 10.70 9.06 12.16 26.56 48.07 17.91 20.31 30.75 4.36 16.33 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2b_E3a KnownJunction 1 7.11 6.31 19.90 28.20 0.00 10.79 4.02 19.26 31.92 26.14 54.59 0.00 6.82 15.36 5.07 3.76 63.86 20.89 13.46 25.89 59.12 5.76 20.40 17 ER2b ExonRegion 1 2.12 7.84 24.51 34.07 0.00 12.84 3.78 17.78 31.23 25.56 46.67 0.00 4.69 22.27 8.70 5.94 49.51 21.65 15.93 22.19 54.15 5.66 21.82 18 ER3a ExonRegion 0 9.88 10.22 40.63 58.81 8.00 17.62 6.84 38.19 56.73 57.21 70.02 21.54 12.84 91.12 45.83 82.48 41.61 81.45 102.50 58.81 69.73 27.14 94.15 19 E3_Da NovelBoundary 0 0.00 6.71 18.98 25.44 0.00 0.00 0.00 10.76 9.26 10.45 0.00 0.00 12.66 2.35 6.30 12.39 12.81 48.25 12.80 11.19 2.66 6.18 8.02 20 E3a_E4b KnownJunction 1 0.00 6.71 8.66 12.19 0.00 2.90 0.00 16.06 18.20 17.25 18.22 6.30 0.00 18.48 20.40 47.68 0.00 32.04 33.70 23.78 18.16 4.84 42.51 21 E3a_E4c KnownJunction 1 0.00 3.35 17.18 29.97 0.00 14.08 7.42 7.19 18.23 12.46 4.90 0.00 0.00 4.59 29.67 25.89 4.49 22.92 39.34 9.27 2.66 16.96 38.07 22 E3a_E5a NovelJunction 0 0.00 5.53 15.88 11.52 3.57 5.22 4.42 14.13 15.74 15.07 11.74 0.00 6.82 2.47 5.19 7.26 3.93 4.77 4.52 2.75 0.00 6.25 0.00 23 E3a_E6a KnownJunction 1 10.59 3.16 18.07 29.80 4.33 2.84 0.00 9.94 22.80 26.32 19.32 26.41 6.33 10.36 9.39 48.88 0.00 46.47 12.80 23.91 28.48 3.12 24.50 24 E3a_E7a NovelJunction 0 0.00 0.00 0.00 3.90 0.00 0.00 0.00 2.01 6.28 2.61 2.68 0.00 0.00 0.00 0.00 8.37 0.00 0.00 4.80 0.00 0.00 8.57 0.00 25 I3 Intron 0 6.32 11.02 11.29 12.69 14.16 9.12 10.99 11.45 8.77 10.49 4.99 5.65 8.00 8.07 8.62 10.51 7.20 13.29 7.62 18.24 5.27 3.75 11.32 26 I3_AR1 ActiveIntronRegion 0 10.90 20.60 21.74 28.81 16.72 16.25 14.76 25.44 17.72 24.53 11.26 4.95 11.62 19.25 18.91 25.85 16.72 34.99 11.03 35.39 13.96 6.68 27.28 27 E4_Aa NovelBoundary 1 62.38 89.66 52.75 52.81 74.96 30.78 47.03 75.66 66.35 86.12 33.01 62.57 53.73 28.31 70.59 22.22 16.46 29.64 11.77 78.04 3.09 13.72 37.30 28 ER4a ExonRegion 1 36.41 88.09 38.35 49.23 53.64 28.02 56.42 62.35 50.28 55.50 22.62 52.17 64.96 26.56 37.46 33.34 24.12 26.90 12.04 82.72 8.97 22.96 24.57 29 E4_Ab KnownBoundary 1 30.30 88.54 25.99 20.28 43.89 26.12 59.53 46.91 30.96 43.36 12.48 37.96 43.18 18.48 28.43 20.93 29.36 17.00 11.01 33.68 25.08 17.57 24.33 30 ER4b ExonRegion 0 36.69 95.63 49.35 37.07 52.81 39.05 60.26 68.75 55.33 62.54 60.76 35.29 64.06 52.20 44.26 52.50 46.36 97.80 32.88 104.37 37.27 9.73 30.66 31 E4_Da KnownBoundary 0 38.67 68.87 38.02 32.13 29.37 32.65 55.29 43.46 45.23 49.75 23.43 6.30 33.60 39.50 19.78 32.21 32.35 69.14 34.64 91.21 33.24 17.21 33.55 32 E4a_E4c KnownJunction 0 3.70 2.89 1.57 5.43 8.66 5.45 36.04 19.80 13.43 10.18 33.01 6.90 0.00 19.25 9.52 7.95 8.79 4.15 4.71 0.00 8.90 2.57 7.43 33 ER4c ExonRegion 0 33.29 39.75 32.84 43.61 37.02 27.60 34.45 44.31 40.95 40.22 39.59 17.40 16.75 31.51 24.21 38.33 30.48 67.22 42.88 72.56 22.98 19.49 39.15 34 E4_Ac KnownBoundary 0 35.49 64.26 35.45 59.67 34.30 27.37 42.62 56.72 45.34 78.01 30.32 12.60 13.64 34.55 15.20 51.44 32.82 145.71 21.37 104.31 16.56 33.56 65.22 35 ER4d ExonRegion 0 31.82 53.00 60.55 56.06 46.40 61.27 52.37 57.93 47.54 70.63 56.79 23.49 34.52 62.77 59.88 55.44 33.85 107.43 43.89 93.83 33.47 30.63 73.38 36 E4_Db KnownBoundary 0 36.45 52.89 44.23 44.95 24.62 32.82 31.58 52.49 47.95 64.60 59.75 18.16 19.80 41.09 58.47 66.99 42.64 117.40 53.93 78.36 28.79 19.59 75.12 37 E4b_E5a KnownJunction 0 3.19 11.71 11.35 14.55 0.00 12.44 21.37 16.02 15.13 16.87 7.63 0.00 0.00 0.00 0.00 3.76 0.00 11.03 0.00 5.94 11.12 5.45 0.00 38 ER4e ExonRegion 0 25.82 23.50 42.18 24.87 21.88 26.94 26.74 35.26 28.08 40.86 54.81 10.49 19.59 65.69 74.40 41.02 35.80 62.91 26.76 34.42 24.34 25.42 49.60 39 E4_Dc NovelBoundary 0 11.26 28.42 22.29 28.70 12.05 11.24 25.22 14.25 33.01 20.15 13.16 6.30 19.32 16.83 6.30 29.14 30.67 116.73 47.25 81.56 7.97 7.78 33.29 40 E4c_E5a KnownJunction 0 29.19 15.59 54.91 26.84 38.71 25.55 37.89 40.21 23.78 43.60 49.38 6.00 12.99 83.53 54.52 14.87 40.95 27.73 26.26 23.52 24.09 27.25 29.28 41 E5_Aa NovelBoundary 0 37.78 82.55 45.42 77.38 62.39 57.64 42.40 41.65 32.26 58.37 14.58 12.60 0.00 11.60 8.90 25.46 12.62 48.17 33.88 50.37 5.00 5.57 4.01 42 ER5a ExonRegion 0 73.45 69.14 115.30 95.89 77.29 71.97 75.06 101.33 91.94 100.49 90.67 24.79 27.23 89.44 97.14 58.50 53.44 87.03 50.95 102.19 32.16 43.94 56.65 43 E5_Da NovelBoundary 0 3.78 24.47 20.73 40.62 8.66 7.38 20.05 52.94 41.93 43.25 13.42 13.35 0.00 2.47 0.00 4.36 12.16 12.56 12.14 55.29 2.66 13.72 0.00 44 E5_Dc NovelBoundary 0 3.11 17.96 7.89 21.04 15.62 16.47 12.41 41.36 40.42 37.15 2.68 0.00 0.00 2.30 0.00 7.60 4.30 0.00 0.00 29.91 0.00 0.00 0.00 45 ER5b ExonRegion 0 2.12 4.88 6.86 6.27 8.03 2.57 11.12 9.33 13.09 16.74 12.37 0.00 0.00 2.27 4.06 6.54 5.94 3.70 7.64 25.11 4.41 2.08 2.94 46 ER5c ExonRegion 0 0.00 1.02 2.14 2.39 1.34 1.38 4.63 3.46 5.87 6.59 2.42 0.00 0.00 0.00 0.00 0.00 1.65 1.39 4.78 12.23 0.00 1.56 0.00 47 I5 Intron 0 3.26 13.01 7.00 18.16 9.15 3.48 7.45 11.27 7.21 12.01 1.17 2.56 5.04 1.77 3.75 1.86 1.72 2.47 3.05 14.72 0.32 1.04 1.35 48 I5_AR3 ActiveIntronRegion 0 6.40 21.67 6.48 10.65 10.58 4.63 7.87 17.20 6.20 14.78 1.68 1.58 5.45 2.27 3.56 3.20 2.17 3.87 2.52 34.67 0.31 1.90 2.91 49 I5_AR4 ActiveIntronRegion 0 3.11 20.13 9.04 7.04 11.80 6.06 10.10 16.51 8.22 11.84 1.31 0.81 1.91 1.44 3.54 2.44 1.56 1.61 2.64 15.34 0.00 1.65 0.00 50 I5_SR3 SilentIntronRegion 0 1.79 9.34 9.88 38.03 12.19 2.76 10.45 12.16 10.70 16.07 1.30 5.14 8.69 2.56 4.84 1.67 1.86 2.84 5.02 12.13 0.62 1.17 1.65 51 ER6a ExonRegion 0 1.00 8.76 6.44 17.37 3.33 17.13 3.56 7.32 9.99 19.34 6.42 8.29 1.67 2.97 0.56 9.14 2.70 17.74 6.85 6.47 10.28 6.33 4.26 52 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER7a ExonRegion 0 3.91 6.29 3.95 18.84 0.91 5.85 0.65 3.33 3.59 12.35 1.16 6.26 0.00 0.17 0.65 0.00 0.43 10.91 4.08 1.90 1.30 3.11 1.87 54 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER8a ExonRegion 0 2.54 1.70 1.80 9.77 0.27 1.23 1.93 1.20 10.17 6.93 0.00 0.00 0.00 0.31 0.68 0.00 0.60 5.13 1.48 0.50 1.54 1.46 1.37