Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DLK2 Gene 0 5.60 17.67 14.49 14.13 8.12 18.78 8.31 25.32 15.62 33.49 5.91 9.40 12.82 18.09 26.22 15.79 15.88 22.14 5.37 20.62 10.30 4.42 8.37 2 357338 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 414245 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 372496 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 372485 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 372488 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 430324 Transcript 0 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.74 1.74 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 6.01 0.00 0.00 0.00 8 ER1a ExonRegion 0 12.21 8.88 9.40 6.51 16.57 8.69 10.63 18.52 12.27 7.27 11.03 27.86 35.83 30.30 44.01 40.94 33.17 8.99 11.65 12.24 8.03 6.44 15.59 9 E1_Ab KnownBoundary 0 6.96 2.57 5.94 6.96 8.49 2.90 10.60 46.50 27.92 13.11 7.37 6.15 63.63 20.31 43.39 51.18 31.14 12.39 0.00 0.00 2.29 5.51 3.16 10 ER1b ExonRegion 0 3.12 8.10 2.83 2.12 6.49 9.02 4.23 24.51 11.24 9.63 4.15 11.71 25.30 14.08 20.64 19.78 21.16 10.21 13.32 1.60 3.36 2.66 2.70 11 E1_Da NovelBoundary 0 10.30 0.00 14.28 1.96 15.87 5.79 0.00 27.72 10.59 7.31 26.90 19.66 13.31 20.01 31.65 37.43 60.50 7.05 0.00 3.13 14.02 0.00 11.01 12 E1a_E3a KnownJunction 0 0.00 6.12 1.09 1.93 0.00 10.73 1.90 1.60 1.39 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 0.00 0.00 2.90 0.00 0.00 13 I1 Intron 0 2.55 1.53 4.67 1.83 6.04 2.48 2.79 12.39 5.54 8.49 7.27 9.16 27.64 23.60 35.43 22.80 23.84 4.01 3.83 8.00 6.63 3.13 3.98 14 I1_SR1 SilentIntronRegion 0 2.57 1.54 4.71 1.85 6.09 2.51 2.81 12.50 5.59 8.56 7.33 9.24 27.85 23.81 35.72 23.01 24.05 4.04 3.87 8.07 6.69 3.16 4.01 15 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.97 1.33 2.47 2.68 0.00 0.00 2.12 0.00 0.00 13.84 3.69 0.00 0.00 0.00 0.00 7.26 16 ER2a ExonRegion 0 0.68 2.23 0.84 0.53 0.70 3.03 0.00 2.01 1.27 5.16 0.00 0.93 2.01 4.85 3.49 3.79 7.92 0.78 0.00 2.53 1.15 0.00 0.78 17 E2_Da NovelBoundary 0 3.70 3.09 6.48 0.00 0.00 2.84 0.00 5.05 1.13 0.00 0.00 0.00 0.00 9.06 4.45 10.94 16.64 4.31 0.00 2.43 2.84 3.12 0.00 18 E2a_E3a KnownJunction 0 3.19 2.76 5.94 0.00 0.00 5.34 0.00 8.50 4.92 8.92 0.00 0.00 0.00 2.47 4.45 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 19 I2 Intron 0 1.13 0.43 3.90 0.87 1.71 0.98 1.13 3.85 0.39 2.19 4.95 3.86 5.36 14.32 18.50 16.81 9.86 3.82 2.04 3.63 3.06 0.89 3.45 20 I2_SR1 SilentIntronRegion 0 1.13 0.44 3.91 0.87 1.72 0.98 1.13 3.86 0.39 2.20 4.97 3.87 5.38 14.38 18.58 16.87 9.90 3.84 2.05 3.65 3.07 0.89 3.46 21 E3_Aa NovelBoundary 0 2.82 0.00 5.06 0.00 0.00 8.06 5.87 2.34 1.77 10.96 6.95 12.60 13.64 14.66 34.24 19.48 12.44 14.72 0.00 3.20 2.72 0.00 0.00 22 ER3a ExonRegion 0 3.01 3.80 6.20 2.18 0.84 5.11 1.06 9.84 4.93 18.46 6.98 5.55 9.13 22.53 34.35 8.08 12.90 10.47 1.34 18.29 9.03 2.35 9.12 23 E3_Da NovelBoundary 0 13.26 0.00 15.79 5.79 11.21 10.11 14.53 22.22 0.00 13.91 7.48 31.36 13.31 35.91 73.18 43.24 34.03 9.74 13.27 8.63 3.15 5.94 7.68 24 E3a_E4a KnownJunction 0 2.96 15.52 9.85 14.15 3.74 10.51 0.00 14.29 4.48 26.46 2.47 0.00 0.00 2.47 5.07 0.00 3.74 18.65 0.00 28.38 14.33 0.00 3.50 25 I3 Intron 0 3.14 0.75 4.74 2.26 4.96 5.78 3.68 5.25 5.46 11.73 4.30 7.18 7.16 8.70 24.88 9.37 8.57 7.16 2.36 4.73 2.45 1.55 3.27 26 I3_SR1 SilentIntronRegion 0 2.52 0.00 4.67 1.25 4.75 6.48 4.31 4.77 5.68 10.67 4.75 8.66 7.93 11.99 25.92 7.82 7.47 5.95 1.93 5.23 3.74 2.53 4.46 27 I3_AR1 ActiveIntronRegion 1 4.19 1.98 4.95 3.92 5.40 4.77 2.75 6.12 5.22 13.63 3.66 4.91 6.07 3.60 23.68 12.03 10.50 9.22 3.09 4.03 0.44 0.00 1.43 28 E4_Aa NovelBoundary 0 0.00 2.89 10.23 4.13 0.00 10.68 5.79 9.65 5.06 10.58 2.32 6.45 5.68 2.83 8.90 0.00 0.00 17.37 0.00 3.20 0.00 3.12 0.00 29 ER4a ExonRegion 0 0.30 18.14 12.90 4.92 0.54 15.36 1.61 11.67 4.90 24.59 3.81 8.39 8.72 10.23 18.09 3.06 5.62 16.89 4.88 19.95 8.68 1.11 0.28 30 E4_Da NovelBoundary 0 3.04 5.92 6.30 3.90 11.80 18.57 4.06 8.83 4.43 15.79 0.00 12.00 6.82 2.47 22.25 11.54 8.51 12.68 4.80 8.69 0.00 0.00 0.00 31 E4a_E5a KnownJunction 0 0.00 23.88 14.34 3.80 0.00 5.11 3.93 19.47 4.11 38.49 2.37 0.00 0.00 4.71 4.45 0.00 4.39 27.53 0.00 23.33 8.03 3.12 0.00 32 I4 Intron 0 8.33 6.90 9.18 4.92 14.26 8.33 8.18 11.39 4.24 9.63 2.46 10.07 12.03 8.33 19.25 15.30 16.79 5.06 7.15 7.35 2.54 0.50 4.45 33 I4_SR1 SilentIntronRegion 0 8.35 6.91 9.20 4.93 14.29 8.35 8.20 11.41 4.25 9.65 2.46 10.10 12.06 8.35 19.29 15.34 16.83 5.08 7.17 7.36 2.54 0.51 4.46 34 E5_Aa NovelBoundary 0 7.11 10.66 8.07 4.93 3.99 7.67 10.47 9.94 4.66 10.96 10.00 6.30 6.17 19.01 32.51 27.26 16.83 21.27 0.00 13.17 8.83 0.00 4.18 35 ER5a ExonRegion 0 2.28 38.32 8.51 10.26 8.13 13.09 8.49 19.96 7.51 37.67 6.44 5.09 3.77 22.26 22.47 13.46 7.31 19.93 2.37 34.33 12.96 0.90 9.96 36 E5_Ab KnownBoundary 0 7.56 45.06 10.56 15.02 24.96 27.14 16.12 33.48 16.87 43.30 7.05 12.60 6.01 27.02 20.03 14.95 14.31 13.64 4.24 28.95 22.86 0.00 7.51 37 ER5b ExonRegion 0 3.35 21.88 5.67 10.09 6.78 20.85 7.67 19.46 10.90 24.75 4.15 1.82 3.25 13.44 28.83 9.64 14.80 13.89 0.67 15.82 11.09 2.96 1.18 38 E5_Da NovelBoundary 0 3.78 15.19 10.91 9.96 16.47 10.39 6.27 18.36 14.87 15.53 2.53 0.00 0.00 4.65 20.15 7.60 0.00 16.83 0.00 11.44 0.00 2.51 0.00 39 E5a_E6a KnownJunction 0 0.00 0.00 1.80 0.00 0.00 5.17 0.00 11.42 1.19 3.44 0.00 0.00 0.00 0.00 5.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E5_Db NovelBoundary 1 7.19 0.00 8.72 7.03 17.06 17.26 8.88 7.48 4.43 4.41 0.00 0.00 14.77 0.00 24.72 12.30 13.46 8.37 4.80 6.39 0.00 0.00 4.35 41 E5b_E6a KnownJunction 0 2.82 25.52 19.81 17.21 12.14 31.80 6.32 16.72 17.16 27.67 2.68 0.00 0.00 5.47 0.00 0.00 0.00 37.97 0.00 14.76 6.30 3.00 0.00 42 E5b_E6b KnownJunction 0 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.74 1.74 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 6.01 0.00 0.00 0.00 43 ER5c ExonRegion 0 0.82 24.06 13.34 12.72 8.03 20.27 4.41 11.81 13.93 26.19 4.19 0.00 1.04 6.32 9.67 2.97 0.55 32.95 0.00 17.85 6.37 3.36 0.49 44 E6_Aa NovelBoundary 0 0.00 9.54 5.03 3.56 4.33 9.94 12.81 15.20 5.15 8.06 4.11 0.00 13.15 2.18 22.99 15.55 13.00 13.56 0.00 6.39 0.00 0.00 0.00 45 ER6a ExonRegion 0 4.66 25.27 15.96 16.92 11.70 40.54 15.90 29.42 16.95 50.63 4.85 0.97 5.79 16.34 42.38 8.32 16.08 31.27 3.76 32.23 15.52 4.19 3.06 46 E6_Ab KnownBoundary 0 7.48 28.42 16.68 29.70 11.46 36.91 6.62 36.27 14.64 49.94 5.16 6.30 6.82 21.13 56.86 26.49 22.35 29.02 8.19 36.94 17.11 0.00 12.12 47 ER6b ExonRegion 0 6.41 24.24 17.35 26.04 4.93 33.78 3.03 37.30 20.74 59.16 8.04 5.47 6.79 39.19 54.97 23.62 26.58 31.41 7.21 28.84 27.26 1.10 7.34 48 E6_Da NovelBoundary 0 54.01 7.50 11.44 17.01 12.39 29.36 8.74 26.74 15.42 35.03 33.22 12.45 14.28 53.39 67.62 77.59 38.43 13.06 9.04 21.67 26.13 6.25 7.00 49 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E6_Db NovelBoundary 0 3.26 0.00 6.50 7.49 4.33 5.79 2.25 20.95 9.35 8.84 4.95 6.30 12.82 7.00 30.04 20.76 13.84 9.37 4.80 2.94 11.86 5.63 20.23 51 E6b_E7a KnownJunction 0 0.00 37.23 22.89 23.47 7.13 55.93 4.11 58.57 27.03 59.61 6.37 0.00 0.00 4.59 4.45 0.00 0.00 35.15 0.00 14.00 10.93 3.00 0.00 52 ER6c ExonRegion 0 4.23 21.12 18.00 22.02 2.68 41.47 1.12 42.15 23.56 53.64 9.22 4.33 2.89 24.86 31.02 9.60 11.93 27.43 1.72 11.95 22.38 2.08 2.03 53 E7_Aa NovelBoundary 0 6.96 12.89 6.77 12.25 3.82 10.56 1.77 14.21 10.71 11.17 0.00 6.30 6.17 2.24 4.82 3.67 4.21 10.74 0.00 7.73 2.29 3.12 12.38 54 ER7a ExonRegion 0 3.45 21.68 27.64 25.46 7.65 35.02 10.11 46.44 28.57 67.74 5.96 3.97 10.81 12.40 20.28 6.51 11.18 58.75 3.21 34.31 22.11 3.72 8.79 55 E7_Ab KnownBoundary 0 6.89 35.52 38.20 42.12 12.31 39.98 13.60 71.55 43.66 92.89 4.63 11.85 6.82 11.71 27.69 7.69 0.00 100.69 12.89 37.71 8.77 2.33 7.51 56 ER7b ExonRegion 0 3.94 27.23 22.71 24.54 5.69 27.40 10.02 36.34 22.99 56.51 3.85 1.68 1.81 12.98 16.56 5.29 7.37 33.70 3.37 29.00 11.55 5.46 7.28 57 ER7c ExonRegion 0 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00