Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPL7L1 Gene 0 121.33 231.32 171.84 158.05 254.89 172.32 171.61 139.71 104.89 202.51 217.55 229.51 196.86 287.91 253.37 256.11 220.95 219.85 223.67 205.17 146.02 167.58 146.75 2 483998 Transcript 0 49.61 137.40 15.00 14.20 47.04 111.65 69.02 23.30 13.17 21.43 58.14 19.01 18.51 77.82 60.75 72.94 41.02 49.21 57.50 62.11 55.62 26.07 49.40 3 493763 Transcript 1 129.25 291.02 203.91 297.58 471.40 254.47 278.91 151.35 122.89 251.38 324.96 530.45 749.37 400.49 227.54 303.99 270.12 180.78 230.24 233.08 78.54 302.62 139.45 4 397415 Transcript 1 10.00 18.55 24.72 26.60 19.86 0.00 6.18 23.00 13.89 16.22 5.16 36.46 6.82 36.73 13.72 37.34 4.21 52.40 35.20 16.30 10.26 24.25 52.93 5 304734 Transcript 0 3.50 1.61 0.85 1.13 9.04 0.89 3.52 0.06 0.17 2.69 0.00 0.15 0.49 0.00 2.00 2.97 0.00 0.00 0.00 1.61 0.00 0.50 0.00 6 487619 Transcript 1 23.73 35.84 10.98 20.84 30.00 11.41 15.90 10.81 6.01 15.07 10.58 26.02 32.80 16.95 12.77 12.06 8.22 14.03 15.06 17.22 7.62 10.12 7.46 7 492836 Transcript 0 8.32 11.97 6.21 7.21 20.37 16.58 15.27 3.98 2.27 5.52 8.18 11.64 15.24 22.58 34.68 21.16 11.99 12.57 30.82 17.87 10.58 10.56 35.14 8 497417 Transcript 0 13.73 24.81 11.53 17.37 20.21 14.34 20.43 13.31 10.45 15.03 12.75 17.23 21.08 20.87 24.99 25.77 20.37 21.81 20.52 17.66 14.65 11.74 21.13 9 462348 Transcript 0 25.78 71.62 25.96 32.21 34.96 27.44 21.18 24.10 19.94 41.02 55.67 70.98 37.88 86.87 51.40 54.16 59.00 47.77 40.63 48.04 46.57 32.18 29.26 10 459829 Transcript 0 19.18 33.10 23.48 32.15 36.04 25.24 23.23 15.22 7.68 16.65 10.63 11.87 10.92 18.28 20.56 18.34 12.85 15.97 16.21 22.83 7.37 9.56 9.16 11 ER1a ExonRegion 0 0.00 3.39 0.00 0.00 0.45 5.20 0.51 0.19 1.03 0.13 0.86 0.00 0.00 1.53 1.77 5.45 4.03 0.00 4.78 2.84 1.59 0.00 0.00 12 ER1b ExonRegion 0 2.12 8.64 0.00 0.00 4.01 24.30 2.98 1.73 2.47 1.43 5.80 0.00 0.00 6.09 11.61 11.89 9.90 0.92 20.70 10.64 3.31 0.00 0.00 13 ER1c ExonRegion 0 7.33 27.52 0.57 2.31 22.15 62.31 19.55 2.33 6.92 4.75 19.42 2.62 0.00 18.81 24.69 23.78 24.64 11.26 32.96 26.03 5.48 7.66 8.06 14 E1_Ad KnownBoundary 0 6.22 47.10 1.48 9.69 46.94 94.38 40.36 6.37 12.33 8.95 33.06 0.00 0.00 26.61 33.01 32.38 26.93 23.84 28.33 32.41 5.50 17.21 20.32 15 ER1d ExonRegion 0 3.18 7.81 3.01 7.31 15.58 13.57 12.70 3.19 11.05 10.19 23.50 12.15 10.39 18.41 14.76 25.04 27.70 19.58 21.04 20.17 14.95 7.33 7.95 16 E1_Ae KnownBoundary 0 6.22 60.52 10.20 16.22 59.25 75.87 54.10 17.00 16.20 21.22 76.18 7.65 21.10 60.69 32.39 89.04 49.65 60.48 20.24 50.56 70.61 7.78 23.65 17 E1_Da NovelBoundary 0 3.78 14.14 15.14 11.22 86.84 81.15 61.25 1.68 1.16 5.48 11.90 6.30 0.00 21.01 29.17 46.06 33.94 26.24 54.87 17.19 28.29 11.33 55.32 18 E1a_E2a KnownJunction 0 0.00 0.00 1.18 1.70 4.33 6.98 2.25 0.00 0.00 0.00 1.95 0.00 0.00 17.54 36.22 7.35 0.00 0.00 25.41 3.26 3.15 0.00 19.38 19 E1a_E2b KnownJunction 1 631.82 1529.00 164.57 240.66 1159.08 924.01 1052.22 150.78 149.19 331.53 675.43 41.41 52.76 1487.09 916.38 1828.92 760.26 757.77 1121.26 715.17 431.64 577.68 997.47 20 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E1a_E3b KnownJunction 1 148.84 387.10 22.89 32.66 133.11 308.35 197.76 30.97 28.79 42.07 158.30 0.00 6.82 202.25 175.29 205.16 101.54 134.81 159.63 153.08 136.78 63.99 131.63 22 ER1e ExonRegion 1 20.64 81.34 11.03 20.78 70.91 95.82 51.97 13.40 18.22 31.25 105.83 17.32 36.35 77.55 53.67 122.60 80.05 73.91 47.78 63.30 81.54 25.52 34.51 23 ER1f ExonRegion 1 45.29 154.55 16.67 32.44 110.78 120.66 104.06 15.21 21.74 45.65 145.74 24.25 37.52 189.37 104.45 201.51 157.12 113.08 77.72 101.28 130.46 34.59 58.73 24 ER1g ExonRegion 1 339.60 939.88 108.95 153.14 642.67 654.58 603.37 111.56 101.45 233.08 514.50 34.05 45.62 889.80 541.22 1109.28 534.75 616.81 669.07 474.37 386.95 374.56 602.28 25 E2_Aa NovelBoundary 0 13.11 28.48 19.72 9.96 19.61 31.63 26.50 14.50 23.70 21.68 24.37 17.56 27.11 2.65 38.82 37.68 17.02 16.95 90.92 10.67 11.43 2.76 27.06 26 ER2a ExonRegion 0 16.63 23.94 11.24 12.72 36.40 26.17 28.30 7.95 4.53 11.03 14.42 23.27 30.49 27.62 33.14 34.97 23.99 25.14 36.22 32.49 18.01 21.13 50.90 27 E2_Ab KnownBoundary 0 6.74 31.84 38.23 28.97 124.02 110.85 47.12 16.59 11.23 31.80 19.37 0.00 20.45 79.88 36.10 78.44 8.42 52.60 59.95 22.63 2.78 23.27 55.14 28 ER2b ExonRegion 1 168.82 483.99 203.56 199.16 343.11 347.51 322.86 186.97 140.39 333.98 277.75 62.01 66.38 379.92 212.65 674.76 326.69 562.79 502.44 294.47 213.36 306.54 443.68 29 E2_Da KnownBoundary 0 13.85 19.67 40.36 30.63 3.48 16.13 6.32 30.72 11.83 17.25 21.79 37.96 27.60 24.66 8.90 35.29 29.55 20.23 27.77 20.13 35.89 12.37 15.02 30 E2a_E3b KnownJunction 1 113.58 127.08 105.88 102.65 92.70 48.84 80.07 76.27 87.38 201.36 317.03 185.01 67.53 116.31 89.50 74.51 406.26 85.64 83.96 165.48 285.72 43.97 41.57 31 ER2c ExonRegion 0 10.63 24.81 53.29 44.01 26.58 14.51 11.03 56.65 37.14 50.31 82.17 45.51 53.88 54.39 17.09 62.41 84.36 53.34 30.30 38.53 59.75 18.33 25.97 32 E2_Db KnownBoundary 0 6.22 36.57 73.42 59.47 46.52 16.98 17.27 80.01 52.46 79.22 112.34 68.27 74.83 106.30 58.47 85.53 125.67 86.06 58.26 55.22 59.12 18.55 35.08 33 ER2d ExonRegion 1 15.80 44.48 64.88 57.03 45.98 21.10 19.32 52.49 41.11 56.38 48.57 34.33 38.25 159.96 65.09 444.69 52.21 119.24 240.34 41.71 40.13 130.85 300.24 34 E2_Dc KnownBoundary 0 0.00 14.08 17.42 18.45 52.38 14.93 16.83 19.06 10.94 5.32 2.68 6.30 27.11 22.13 4.45 26.40 17.39 46.14 26.73 14.51 6.24 4.84 11.78 35 E2c_E3b KnownJunction 1 10.00 18.55 24.72 26.60 19.86 0.00 6.18 23.00 13.89 16.22 5.16 36.46 6.82 36.73 13.72 37.34 4.21 52.40 35.20 16.30 10.26 24.25 52.93 36 ER2e ExonRegion 0 13.73 24.81 11.53 17.37 20.21 14.34 20.43 13.31 10.45 15.03 12.75 17.23 21.08 20.87 24.99 25.77 20.37 21.81 20.52 17.66 14.65 11.74 21.13 37 E2_Dd NovelBoundary 0 47.79 58.15 67.09 77.75 4.33 7.33 9.54 63.87 46.73 42.90 0.00 25.21 20.45 18.84 22.00 31.70 35.44 56.54 8.94 18.60 11.74 11.33 3.41 38 I2 Intron 0 15.01 35.35 14.62 33.91 35.49 24.32 21.80 15.90 10.10 25.40 16.79 60.22 63.16 32.75 30.01 25.83 15.10 10.32 23.31 26.28 2.52 18.11 10.75 39 I2_SR1 SilentIntronRegion 0 15.07 35.51 14.68 34.05 35.65 24.43 21.90 15.98 10.15 25.51 16.86 60.50 63.44 32.90 30.15 25.95 15.17 10.36 23.40 26.38 2.53 18.19 10.79 40 E3_Aa NovelBoundary 1 84.83 126.23 35.04 47.98 85.57 48.15 74.46 55.16 26.24 34.57 31.48 80.43 137.49 55.86 71.82 35.38 26.46 21.64 34.54 50.17 5.87 24.92 16.65 41 ER3a ExonRegion 1 62.54 68.84 21.47 46.84 65.59 29.33 33.43 18.57 13.56 32.55 25.91 56.87 94.51 45.93 30.30 29.36 19.41 16.06 32.38 34.92 14.32 19.94 18.94 42 E3_Ab KnownBoundary 1 92.31 84.39 31.16 40.15 85.06 45.14 50.04 23.66 19.70 21.17 25.37 99.03 147.23 80.35 23.24 49.13 46.66 24.08 32.57 62.57 22.24 12.25 17.33 43 ER3b ExonRegion 0 63.74 201.69 248.54 295.92 264.23 216.33 182.15 242.28 191.55 403.45 441.44 371.32 196.92 625.89 344.77 611.29 449.87 628.19 467.31 460.08 356.41 383.05 348.78 44 E3_Da KnownBoundary 0 12.59 26.31 18.15 26.40 18.00 2.73 31.05 16.18 8.19 15.55 7.90 6.30 5.84 9.89 4.45 12.13 14.03 16.54 16.85 27.61 5.99 9.12 4.01 45 E3a_E4a KnownJunction 0 0.00 3.09 0.00 2.06 0.00 0.00 4.15 0.00 0.00 0.00 0.00 5.85 0.00 0.00 0.00 3.67 4.30 3.52 0.00 0.00 0.00 2.57 0.00 46 E3a_E5a KnownJunction 0 112.69 289.75 276.63 428.22 963.92 662.52 743.30 324.69 237.35 466.73 577.62 681.07 528.05 909.30 622.41 608.47 482.37 549.55 540.44 528.40 478.84 436.96 309.70 47 ER3c ExonRegion 0 8.64 38.68 11.48 15.67 24.43 4.91 14.27 13.85 4.48 12.65 5.83 21.19 3.88 4.92 8.02 6.82 5.26 26.02 12.80 16.73 8.54 10.43 3.44 48 ER4a ExonRegion 0 6.50 8.09 5.89 5.01 4.91 7.90 5.11 4.69 2.78 2.10 4.26 4.84 4.13 3.92 6.04 4.10 13.44 12.01 13.61 17.88 8.05 6.28 5.35 49 E4a_E5a KnownJunction 0 7.04 5.26 5.06 2.03 0.00 0.00 0.00 0.00 1.79 0.00 4.47 0.00 0.00 4.89 0.00 0.00 0.00 2.53 0.00 0.00 0.00 3.06 0.00 50 ER5a ExonRegion 0 155.90 678.54 253.33 300.32 388.60 338.68 348.40 268.79 199.09 470.48 625.50 700.84 309.24 782.20 415.17 577.09 623.37 495.83 463.22 411.25 423.72 365.02 293.24 51 E5a_E6b KnownJunction 0 318.43 801.30 313.27 355.43 246.43 166.78 181.91 385.40 268.40 603.56 643.48 376.17 250.96 451.65 307.44 456.03 780.27 484.13 299.59 392.77 403.22 423.98 229.37 52 E5a_E7b NovelJunction 0 3.48 134.65 55.11 51.11 26.40 60.76 28.53 26.04 13.28 28.31 2.47 0.00 6.82 20.19 8.90 0.00 0.00 18.16 18.07 42.70 9.02 0.00 0.00 53 ER6a ExonRegion 0 19.18 33.10 23.48 32.15 36.04 25.24 23.23 15.22 7.68 16.65 10.63 11.87 10.92 18.28 20.56 18.34 12.85 15.97 16.21 22.83 7.37 9.56 9.16 54 E6_Ab KnownBoundary 0 5.93 38.55 40.92 42.12 24.28 18.00 23.72 34.46 9.40 28.18 11.74 12.00 0.00 31.37 50.81 24.18 26.93 44.52 12.05 14.96 6.30 24.68 19.12 55 ER6b ExonRegion 0 308.14 588.77 233.92 277.90 191.16 184.17 165.73 250.67 193.06 428.56 549.62 535.38 311.39 757.81 432.69 528.77 616.72 469.82 412.34 410.40 417.25 341.64 226.04 56 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E6a_E7b KnownJunction 0 300.50 719.15 250.94 346.24 380.14 274.22 224.21 257.16 214.41 441.80 520.97 663.22 451.27 911.48 556.65 571.90 579.15 513.11 446.41 458.35 461.79 306.84 360.83 58 ER7a ExonRegion 0 115.35 341.64 118.86 151.96 169.91 129.28 96.65 115.81 95.10 203.00 269.64 344.19 185.26 425.52 250.96 263.03 277.28 220.81 189.53 222.34 224.78 148.97 140.96 59 ER7b ExonRegion 0 150.14 565.42 279.56 342.33 454.69 318.80 347.59 226.55 207.11 441.78 433.30 545.20 325.05 727.85 471.60 552.75 478.19 522.71 394.73 432.87 347.47 287.31 284.37 60 E7_Da KnownBoundary 0 173.96 460.64 358.24 325.07 830.90 368.54 397.86 189.43 198.20 395.43 514.24 488.56 458.25 867.39 451.45 574.55 573.07 519.66 462.41 538.82 422.68 334.21 282.89 61 ER7c ExonRegion 0 121.90 389.68 303.37 355.58 309.21 223.72 203.05 210.39 189.05 382.51 414.71 428.13 330.57 876.10 567.04 582.49 458.17 618.63 425.60 442.96 389.52 280.84 291.41 62 E7_Db KnownBoundary 1 125.06 396.90 324.38 329.40 250.85 102.27 176.03 169.96 163.19 362.99 345.82 435.89 148.69 623.17 503.12 451.33 389.53 501.67 320.57 447.87 292.64 264.41 232.02 63 E7b_E7c KnownJunction 0 101.94 119.52 54.61 57.20 130.82 103.35 98.57 63.95 62.07 87.33 103.08 72.62 25.32 89.47 70.09 76.56 133.71 77.93 63.06 37.65 57.27 64.36 44.90 64 ER7d ExonRegion 0 159.91 346.04 164.19 140.52 272.19 172.33 186.75 115.20 100.65 206.49 288.79 182.46 218.18 451.09 333.47 342.49 311.34 317.92 259.24 307.92 239.51 190.26 184.75 65 E7_Dc KnownBoundary 0 262.42 275.48 131.81 127.56 525.72 321.63 380.20 95.91 116.12 153.35 222.16 160.10 279.36 450.06 215.59 265.74 186.26 122.95 209.14 188.11 108.54 274.02 148.45 66 ER7e ExonRegion 1 129.25 291.02 203.91 297.58 471.40 254.47 278.91 151.35 122.89 251.38 324.96 530.45 749.37 400.49 227.54 303.99 270.12 180.78 230.24 233.08 78.54 302.62 139.45 67 E7_Ac KnownBoundary 1 214.93 487.94 432.07 353.97 601.44 421.69 493.39 312.37 238.22 511.24 402.79 958.21 623.01 522.63 333.89 369.56 454.51 214.23 221.65 362.03 117.69 259.57 177.73 68 ER7f ExonRegion 0 232.38 483.55 333.49 341.35 567.05 401.55 368.08 286.35 210.84 409.05 454.75 806.78 681.08 617.64 382.22 430.12 388.70 258.28 321.15 290.32 168.22 330.88 212.53 69 E7_Dd KnownBoundary 1 921.05 1108.03 650.27 643.87 1806.79 914.13 1000.06 594.46 401.47 609.95 589.36 1147.72 1102.85 1003.89 659.99 689.82 607.11 326.11 644.91 530.00 260.89 553.06 368.26 70 ER7g ExonRegion 1 412.52 653.81 331.55 341.59 999.03 557.42 570.27 319.57 212.18 382.08 495.53 1008.01 1263.48 931.29 545.44 459.26 583.68 265.69 405.55 407.53 308.10 306.91 211.53 71 E7_De KnownBoundary 1 249.08 428.15 267.61 231.71 289.64 240.37 237.73 214.04 185.91 262.82 297.97 662.32 605.32 502.15 559.86 343.76 502.76 291.71 312.01 398.14 341.51 241.75 161.85 72 E7e_E7d KnownJunction 1 0.00 21.71 22.12 9.92 7.56 21.41 8.79 38.73 9.69 22.11 15.27 57.02 48.70 29.67 5.19 8.20 17.48 12.81 8.09 30.42 28.48 14.21 16.56 73 ER7h ExonRegion 0 196.46 315.05 278.82 253.43 476.05 342.24 348.12 221.52 174.70 297.36 340.41 395.88 350.27 458.88 407.49 420.82 407.89 363.78 385.46 321.00 221.21 249.84 227.49 74 E7_Ad KnownBoundary 0 324.50 246.34 336.92 305.16 264.01 110.50 321.64 243.57 272.22 288.01 95.87 96.18 65.90 146.15 161.69 320.94 164.00 613.10 197.75 327.77 163.28 136.92 229.29 75 ER7i ExonRegion 0 285.81 528.65 439.82 333.13 528.25 361.34 326.57 330.91 233.89 463.97 465.29 433.46 361.94 527.64 559.86 527.51 409.31 483.65 527.83 436.09 325.81 368.75 330.76 76 E7_Df KnownBoundary 1 333.99 372.63 180.36 177.70 388.12 374.16 435.00 208.08 132.52 198.86 132.19 82.38 114.93 110.78 275.17 224.81 190.28 111.22 273.98 244.87 76.97 214.07 128.04 77 ER7j ExonRegion 1 196.40 219.50 314.15 274.83 467.26 210.80 243.04 286.19 193.01 368.88 279.17 377.08 256.32 275.29 511.96 174.66 203.93 87.39 167.93 270.91 74.12 273.00 91.55 78 ER7k ExonRegion 0 3.50 1.61 0.85 1.13 9.04 0.89 3.52 0.06 0.17 2.69 0.00 0.15 0.49 0.00 2.00 2.97 0.00 0.00 0.00 1.61 0.00 0.50 0.00 79 IG20 Intergenic 0 3.80 4.87 2.18 6.68 10.40 2.74 8.91 6.93 6.06 8.69 5.20 16.34 2.43 3.09 5.05 1.78 4.44 6.32 1.43 6.05 0.99 1.87 3.51 80 IG20_AR1 ActiveIntergenicRegion 0 3.67 5.75 2.50 6.60 11.91 1.99 7.36 6.36 5.35 10.59 5.29 15.88 2.69 2.94 4.19 1.63 5.01 5.77 0.69 5.17 0.96 1.81 2.59 81 IG20_SR1 SilentIntergenicRegion 0 0.05 2.26 2.10 8.09 10.64 1.14 18.54 13.29 11.53 8.23 7.17 14.24 0.00 2.67 5.93 1.59 2.42 9.94 0.00 7.00 0.15 1.16 5.22 82 IG20_AR2 ActiveIntergenicRegion 0 7.26 2.91 1.23 9.54 8.41 9.17 15.13 10.12 8.12 3.44 7.73 17.94 0.00 3.25 3.32 0.00 5.66 11.09 0.91 14.89 2.20 4.17 6.29 83 IG20_SR2 SilentIntergenicRegion 0 8.47 4.07 1.23 9.54 7.36 9.17 13.90 7.99 6.48 3.44 7.73 23.81 2.35 3.25 5.80 2.23 6.60 9.70 5.57 14.63 2.20 4.17 8.81 84 IG20_AR3 ActiveIntergenicRegion 0 7.07 3.51 1.00 5.02 3.47 6.33 5.84 3.10 4.10 1.23 2.11 20.07 4.05 4.36 9.17 2.97 3.08 4.49 6.15 7.06 1.65 2.23 5.47