Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRRC1 Gene 0 13.04 6.36 5.20 4.96 8.11 5.88 4.71 5.01 5.90 4.59 13.34 20.31 19.44 30.57 24.23 14.16 30.28 4.24 3.61 5.20 12.13 15.06 7.75 2 487251 Transcript 0 0.75 0.78 0.79 0.45 0.88 2.33 0.56 0.90 0.70 0.55 1.29 1.25 0.88 2.67 3.22 2.72 1.57 0.52 0.74 1.89 0.53 0.65 0.60 3 370892 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 370888 Transcript 0 18.54 9.78 11.24 6.09 15.24 10.89 7.27 9.70 10.68 6.78 27.99 41.57 54.43 57.39 44.74 31.99 60.77 9.00 7.07 10.20 18.74 33.44 14.89 5 370882 Transcript 0 1.94 0.53 0.96 0.27 0.35 0.96 0.17 0.34 1.95 0.45 3.98 0.93 5.61 2.51 6.29 1.55 15.66 0.24 1.96 0.56 0.58 0.00 0.38 6 474641 Transcript 0 2.48 0.84 1.23 0.55 1.69 0.71 1.54 0.65 0.31 0.87 1.59 2.83 2.39 4.54 2.96 2.06 2.39 0.48 0.78 0.94 2.17 1.22 0.60 7 490222 Transcript 0 13.39 6.21 0.76 1.29 3.71 1.33 2.21 2.61 0.43 2.66 2.07 1.69 5.43 7.57 6.09 3.02 6.74 1.06 1.40 1.73 4.16 6.62 4.67 8 ER1a ExonRegion 0 0.00 0.86 0.00 0.86 1.14 1.96 0.00 1.14 0.78 0.73 2.46 0.00 0.00 2.00 0.46 2.53 1.40 0.00 1.35 4.52 0.94 0.89 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 1.48 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 6.18 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.52 0.38 0.36 1.61 0.00 0.98 1.84 3.11 0.62 0.19 0.57 0.00 0.44 0.20 0.00 1.75 11 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 2.12 0.00 0.00 4.11 0.00 0.00 0.00 3.03 0.00 3.16 12 ER2b ExonRegion 0 2.91 0.00 0.61 0.00 0.00 1.70 1.62 0.16 0.10 0.00 6.77 0.00 1.66 5.57 5.93 2.46 17.94 0.00 0.87 0.35 7.95 4.55 2.91 13 E2_Ac KnownBoundary 0 0.00 0.00 1.57 1.80 0.00 0.00 2.21 3.82 1.13 0.00 4.37 5.40 0.00 14.77 4.45 12.73 21.97 1.91 4.80 3.07 9.08 2.88 0.00 14 ER2c ExonRegion 0 1.09 0.32 2.10 1.27 0.91 0.95 1.36 1.66 3.34 1.26 8.71 2.86 1.70 28.41 10.61 12.67 33.90 4.67 5.99 4.45 17.32 5.69 7.20 15 E2a_E3a KnownJunction 0 0.00 0.00 4.46 0.00 0.00 2.50 6.14 2.01 10.59 4.89 25.11 6.30 6.82 43.91 16.81 24.44 54.79 6.34 9.41 14.70 16.49 8.45 4.27 16 ER3a ExonRegion 1 8.77 3.21 6.18 3.33 9.93 2.55 4.52 2.33 5.11 5.84 28.60 9.65 12.40 75.65 19.84 21.66 71.53 6.83 6.96 6.18 23.38 17.11 9.48 17 E3a_E4a KnownJunction 0 20.97 6.18 3.67 6.66 21.48 8.69 11.88 2.30 6.22 2.93 21.16 30.91 12.66 59.10 37.21 41.78 95.09 5.14 4.52 3.26 28.48 21.80 20.83 18 E4_Aa NovelBoundary 0 0.00 6.05 0.00 1.27 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 21.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4a ExonRegion 0 8.44 3.66 6.03 4.07 10.80 4.11 4.17 2.78 9.32 7.23 33.86 29.98 25.88 56.58 31.07 35.03 81.60 8.84 10.08 4.31 32.80 26.29 11.15 20 E4a_E5a KnownJunction 0 0.00 3.35 6.27 4.83 0.00 0.00 0.00 0.00 10.71 9.89 33.69 29.26 15.10 80.05 57.85 40.76 56.29 8.54 8.38 10.67 29.47 36.86 6.57 21 ER5a ExonRegion 0 4.47 4.11 4.56 5.35 9.28 3.81 7.15 3.00 12.28 9.70 34.90 39.98 36.48 62.93 32.69 22.29 86.08 7.14 5.95 9.67 20.96 35.26 10.74 22 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 5.37 0.00 6.82 0.00 4.45 0.00 16.64 0.00 3.76 0.00 0.00 0.00 0.00 23 E5a_E7a KnownJunction 0 9.93 0.00 8.34 7.42 0.00 4.77 12.85 3.61 6.77 8.84 39.85 19.66 67.04 43.73 34.61 30.25 65.73 2.11 0.00 8.76 20.02 23.21 12.04 24 E6_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.60 6.82 4.65 6.30 0.00 16.92 0.00 0.00 0.00 0.00 0.00 0.00 25 ER6a ExonRegion 0 3.87 1.06 1.91 0.53 0.70 1.92 0.35 0.67 2.51 0.89 2.59 1.86 4.40 5.02 8.14 3.11 14.68 0.48 0.15 1.11 1.15 0.00 0.77 26 E6_Da NovelBoundary 0 0.00 2.57 3.96 0.00 17.06 0.00 6.76 0.00 2.63 1.29 0.00 6.30 0.00 4.89 17.06 16.15 7.85 0.00 0.00 0.00 8.15 5.88 4.10 27 ER7a ExonRegion 0 4.31 4.85 6.69 5.76 9.81 6.79 7.87 4.85 12.85 8.25 26.38 48.69 64.34 43.34 28.05 30.35 66.77 8.56 13.36 6.01 8.66 24.42 17.93 28 E7a_E8a KnownJunction 1 0.00 6.51 3.19 7.26 12.22 5.45 8.21 4.27 12.44 10.88 16.90 60.77 72.24 58.27 28.18 37.51 30.29 13.64 17.22 5.94 0.00 25.96 16.65 29 ER8a ExonRegion 1 4.66 9.91 5.80 7.13 18.52 6.99 8.50 7.78 12.54 10.21 25.07 49.79 87.86 64.46 31.96 23.45 54.10 11.87 4.68 15.16 3.79 37.18 12.85 30 E8a_E9a KnownJunction 1 11.04 7.83 11.50 5.19 27.16 12.55 3.89 10.64 13.43 6.98 17.37 50.27 107.30 73.46 28.56 20.08 74.61 8.66 4.80 20.96 0.00 28.04 28.60 31 E8a_E9b KnownJunction 0 0.00 5.92 0.00 0.00 7.05 0.00 0.00 0.00 3.04 0.00 0.00 0.00 6.82 2.47 0.00 0.00 0.00 0.00 0.00 3.26 0.00 5.08 0.00 32 ER9a ExonRegion 1 13.55 9.35 10.05 4.36 19.80 9.17 2.65 8.64 12.60 5.73 25.51 69.27 90.05 71.79 30.75 23.78 73.94 8.87 3.19 18.30 8.37 34.17 21.14 33 ER9b ExonRegion 1 13.11 10.56 10.46 4.51 23.05 6.98 4.48 9.24 14.06 4.94 23.94 74.43 57.18 68.78 32.69 25.03 62.59 7.32 2.33 22.42 12.54 39.35 19.65 34 ER9c ExonRegion 0 12.94 8.37 7.49 5.23 10.16 2.08 7.73 6.60 17.99 4.20 24.12 56.38 51.27 56.66 35.34 23.84 66.84 2.81 2.46 9.62 14.32 31.30 13.62 35 E9b_E10a KnownJunction 0 24.23 14.87 1.83 7.03 10.53 0.00 4.06 4.39 22.34 8.06 35.22 47.72 60.55 38.61 65.27 22.81 83.03 3.94 4.52 2.68 12.36 25.60 20.15 36 ER10a ExonRegion 1 20.07 16.42 7.09 4.74 19.38 8.30 9.61 5.44 15.89 8.67 31.35 74.62 86.30 76.05 36.10 31.22 70.78 5.85 0.77 10.84 22.93 28.64 15.98 37 E10a_E11a KnownJunction 0 9.93 8.49 7.89 5.33 53.48 12.95 10.20 3.90 12.47 9.21 23.85 77.58 54.70 54.09 51.67 27.86 83.50 1.74 4.61 7.61 20.45 20.82 27.66 38 ER11a ExonRegion 0 15.24 12.00 8.17 6.92 17.02 5.52 6.99 2.69 13.20 9.55 37.50 55.01 56.71 68.21 40.74 29.17 71.40 3.40 4.87 11.80 25.93 42.46 18.68 39 E11a_E12a KnownJunction 0 19.93 21.31 12.42 5.03 30.14 8.92 1.77 7.39 14.55 7.47 26.74 74.27 66.39 63.16 55.01 22.30 52.08 2.11 8.85 2.68 22.80 31.60 7.51 40 ER12a ExonRegion 1 18.90 10.97 13.84 4.80 18.83 9.23 9.14 6.05 15.66 7.24 19.88 45.36 72.14 81.15 64.79 42.28 74.55 3.50 5.99 8.92 32.85 42.49 17.97 41 E12_Da KnownBoundary 0 0.00 3.35 0.00 0.00 8.66 5.79 0.00 2.01 2.92 1.42 0.00 0.00 0.00 0.00 15.20 0.00 0.00 0.00 9.60 3.26 0.00 3.12 0.00 42 E12a_E13a KnownJunction 0 9.93 7.70 10.41 6.36 16.21 5.79 6.93 4.85 10.30 2.58 24.80 26.11 60.06 46.44 47.96 44.86 42.08 3.36 0.00 5.50 15.51 52.72 6.66 43 ER12b ExonRegion 0 3.00 2.25 1.67 0.92 2.39 3.20 2.25 1.93 1.64 1.13 1.10 5.01 2.55 2.60 3.14 3.71 4.68 1.51 1.62 2.58 1.00 1.71 0.67 44 I12_AR3 ActiveIntronRegion 0 0.04 1.17 0.00 3.86 0.40 7.20 0.39 0.00 2.47 0.72 0.89 0.96 3.73 2.17 0.00 0.00 2.51 0.17 0.00 6.26 9.26 0.23 1.47 45 ER13a ExonRegion 0 16.53 9.75 6.24 5.29 12.25 8.00 6.07 8.05 6.93 6.83 29.23 50.05 37.84 65.59 43.04 20.80 62.18 7.06 4.39 9.32 28.42 29.44 8.46 46 E13_Da NovelBoundary 0 0.00 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 7.74 7.65 0.00 4.94 0.00 0.00 0.00 2.28 0.00 2.56 6.30 5.45 0.00 47 E13a_E15b KnownJunction 0 14.45 14.34 10.11 0.00 4.33 11.58 4.33 8.95 7.41 5.48 38.64 47.87 21.59 38.08 56.12 23.84 67.41 2.24 9.41 5.62 27.37 20.21 7.60 48 I13_AR1 ActiveIntronRegion 0 1.49 1.75 0.00 0.54 0.18 2.91 1.52 0.68 2.22 1.21 4.43 6.22 7.67 12.33 2.09 2.10 10.77 2.11 0.56 1.31 6.24 4.33 3.63 49 I13_SR2 SilentIntronRegion 0 1.50 1.10 0.00 1.25 2.63 2.46 1.70 1.78 1.47 1.32 4.59 6.35 9.49 11.12 1.57 4.54 11.21 3.57 0.52 5.57 5.05 6.09 3.90 50 I13_SR3 SilentIntronRegion 0 2.46 2.53 0.52 1.68 3.56 4.49 2.41 1.35 3.29 1.00 4.71 10.36 8.83 9.22 3.82 3.24 10.31 1.94 1.67 2.59 4.50 4.61 2.76 51 I13_SR4 SilentIntronRegion 0 6.80 2.76 2.12 1.50 4.90 1.81 3.72 3.44 2.67 1.67 4.28 10.20 12.74 3.84 6.03 2.90 2.45 2.40 0.00 2.50 1.63 7.79 1.81 52 E14_Aa NovelBoundary 0 17.26 9.27 5.41 3.60 11.46 0.00 1.81 1.68 7.75 4.43 2.16 11.85 13.64 16.83 6.30 10.42 4.68 1.66 0.00 0.00 3.15 22.78 8.02 53 ER14a ExonRegion 0 5.57 2.92 2.62 1.95 4.41 2.63 2.54 2.47 0.88 3.27 4.63 8.11 5.75 13.86 9.89 6.40 6.32 1.76 3.05 3.57 7.85 4.49 2.11 54 E14_Da NovelBoundary 0 6.52 5.92 0.00 3.86 4.33 5.79 0.00 0.00 0.00 2.74 6.69 5.55 12.99 24.07 12.11 0.00 13.09 0.00 3.58 0.00 2.59 2.94 3.59 55 E14a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER15a ExonRegion 0 13.39 6.21 0.76 1.29 3.71 1.33 2.21 2.61 0.43 2.66 2.07 1.69 5.43 7.57 6.09 3.02 6.74 1.06 1.40 1.73 4.16 6.62 4.67 57 E15_Ab KnownBoundary 0 3.63 6.12 3.08 0.00 0.00 2.56 15.06 0.00 0.00 4.03 0.00 0.00 0.00 2.41 13.97 0.00 0.00 4.15 3.67 0.00 8.22 2.88 0.00 58 ER15b ExonRegion 0 40.30 15.07 12.10 11.58 10.03 15.12 10.03 18.26 13.95 12.26 40.28 31.34 35.91 78.48 75.60 35.82 87.38 15.67 14.83 13.29 42.91 39.88 19.29 59 E15a_E16b KnownJunction 0 34.38 8.88 17.59 18.61 32.00 17.60 7.64 12.20 11.83 10.88 50.49 24.46 61.03 86.94 68.61 28.20 91.91 8.33 8.38 20.77 45.04 31.60 23.73 60 ER16a ExonRegion 0 4.37 0.13 1.16 0.24 2.34 0.21 0.96 0.15 0.19 0.19 1.72 3.19 3.81 4.28 1.96 1.82 2.76 0.16 0.08 0.21 0.83 0.39 0.29 61 E16_Ab KnownBoundary 0 6.82 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.47 6.30 8.12 4.21 0.00 0.00 0.00 0.00 0.00 0.00 62 ER16b ExonRegion 0 29.46 10.83 13.79 10.53 22.56 12.18 10.63 10.90 12.64 8.78 33.09 30.73 23.83 68.61 55.64 36.54 76.46 14.21 5.90 10.95 42.59 30.64 17.38 63 E16_Da KnownBoundary 0 17.78 16.71 13.33 7.23 17.91 11.75 5.56 12.53 13.86 8.27 17.48 5.40 0.00 35.55 24.72 23.33 35.06 15.84 8.19 0.00 20.76 25.96 10.50 64 E16b_E17a KnownJunction 0 40.01 8.81 21.79 11.09 14.01 18.80 19.87 18.07 16.17 13.11 45.27 18.16 40.74 70.34 67.62 73.74 76.95 27.82 24.00 6.07 39.29 48.80 20.91 65 ER16c ExonRegion 0 28.17 14.08 15.46 8.18 17.29 18.34 17.11 15.56 20.05 10.32 41.04 16.98 31.75 73.34 59.36 55.33 61.45 26.72 19.11 4.26 36.62 50.00 20.56 66 ER16d ExonRegion 0 0.00 0.30 1.13 0.00 0.00 0.00 2.65 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 67 ER17a ExonRegion 0 24.28 10.69 8.55 10.36 12.90 10.37 7.18 8.67 7.95 6.77 15.11 29.27 23.43 36.04 39.09 16.84 28.25 5.00 3.70 5.64 12.20 20.69 10.85