Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 YIPF3 Gene 0 184.11 217.63 340.82 241.52 246.03 320.54 122.79 301.81 300.93 419.57 241.08 120.88 159.16 220.66 321.54 240.82 215.79 276.79 325.48 190.04 512.81 442.23 299.95 2 460903 Transcript 0 7.32 6.94 7.78 13.67 21.12 19.72 5.95 14.18 12.32 12.70 4.58 4.57 4.87 6.57 6.88 6.92 8.64 8.23 7.49 5.37 8.23 6.12 7.71 3 416380 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 490447 Transcript 0 16.23 6.05 11.89 8.46 8.66 2.38 2.16 16.22 8.28 13.73 14.90 0.00 0.00 11.89 13.72 8.54 4.30 12.68 3.58 6.01 5.25 20.82 4.10 5 455768 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 4.63 0.00 0.00 2.47 0.00 0.00 4.21 2.28 14.40 9.72 14.70 5.63 3.93 6 460547 Transcript 0 33.32 29.86 38.56 26.80 44.36 49.49 17.09 49.16 39.29 53.94 24.32 11.29 8.53 25.44 27.60 33.22 16.35 28.85 28.49 17.02 38.87 30.42 24.59 7 372422 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 259737 Transcript 0 0.00 1.53 3.68 3.41 0.67 0.00 2.65 3.46 2.16 2.87 2.90 1.08 1.17 0.00 2.18 0.00 3.30 2.31 0.00 2.66 1.10 2.08 2.94 9 488966 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 372417 Transcript 0 15.72 15.79 13.81 17.64 55.68 48.65 13.67 27.34 20.29 29.59 12.97 11.58 10.28 12.23 12.29 23.44 9.64 14.10 15.64 8.94 22.38 26.43 14.78 11 ER1a ExonRegion 0 0.87 2.03 0.00 0.00 7.30 6.50 1.81 1.49 0.90 0.16 0.18 0.00 0.00 3.62 1.19 8.11 0.45 1.43 2.90 2.22 1.50 2.08 0.40 12 ER1b ExonRegion 1 188.22 171.92 113.79 72.35 217.32 463.53 163.80 113.34 117.80 182.68 152.65 21.74 48.84 127.18 150.51 162.38 178.35 189.41 233.85 114.60 443.23 231.47 237.92 13 E1a_E2a KnownJunction 0 3.56 6.38 17.83 19.91 4.33 2.61 0.00 34.83 22.51 51.90 24.37 0.00 0.00 12.24 0.00 15.81 25.62 22.92 18.73 9.65 23.04 3.12 4.35 14 E1a_E2b KnownJunction 0 81.64 100.84 388.40 230.34 103.57 199.26 49.73 351.72 302.54 480.21 342.24 81.48 124.83 306.85 387.79 302.57 357.92 280.60 420.53 309.49 1005.67 515.71 363.31 15 E1a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 4.63 0.00 0.00 2.47 0.00 0.00 4.21 2.28 14.40 9.72 14.70 5.63 3.93 16 ER2a ExonRegion 0 40.01 31.77 33.35 33.53 55.18 42.22 30.22 55.25 47.21 67.21 40.69 24.07 19.21 35.59 40.02 33.91 37.02 51.26 98.68 33.93 49.48 28.83 26.94 17 E2_Ab KnownBoundary 0 55.05 73.21 40.00 48.38 55.35 76.49 37.71 71.18 63.74 79.14 31.85 36.31 34.09 24.07 39.68 31.27 26.37 62.84 28.61 51.71 35.03 22.23 22.45 18 ER2b ExonRegion 0 133.17 183.60 461.04 337.16 348.07 366.76 118.70 461.67 430.27 608.12 355.38 176.18 229.91 348.82 537.15 486.82 348.01 551.61 645.39 404.43 859.31 941.58 769.40 19 E2_Ac KnownBoundary 0 174.99 187.73 464.06 355.13 466.98 408.40 122.11 429.88 401.18 536.38 284.65 186.81 248.36 255.64 503.99 542.76 242.64 574.54 709.86 378.01 568.10 803.57 923.97 20 E2_Da KnownBoundary 0 120.69 173.52 333.67 252.95 202.80 210.90 92.87 274.91 304.77 455.36 197.68 126.34 150.48 207.90 473.45 310.52 213.65 386.22 423.26 281.56 478.96 562.80 530.28 21 E2a_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2c ExonRegion 0 141.38 190.65 476.36 364.71 346.78 330.54 118.76 423.82 442.67 623.46 304.53 174.91 221.60 273.91 506.85 505.11 269.85 586.94 678.00 386.49 626.40 810.18 842.08 23 ER2d ExonRegion 0 143.89 253.11 489.18 306.91 309.23 463.57 150.52 383.24 432.52 608.39 359.52 192.96 387.25 289.82 407.93 346.87 290.19 455.02 497.69 354.29 768.18 605.80 490.62 24 E2_Ad KnownBoundary 0 158.40 308.83 593.71 355.23 669.95 898.69 282.77 520.61 538.91 749.48 421.00 327.41 444.94 271.59 399.28 349.65 335.02 559.29 602.09 381.39 1013.89 777.67 487.08 25 ER2e ExonRegion 0 150.81 361.98 590.38 389.22 556.18 1093.50 430.91 531.86 539.56 829.36 500.62 259.06 282.35 411.23 532.66 339.99 392.68 464.65 588.69 349.55 1088.35 937.53 428.53 26 E2b_E3a KnownJunction 0 226.34 602.26 683.15 528.74 371.73 874.84 441.10 644.53 645.60 970.44 459.43 263.94 270.76 294.96 568.39 384.77 473.68 531.72 556.06 308.53 1189.28 1034.42 462.67 27 E2b_E4b KnownJunction 0 0.00 2.70 3.90 6.96 11.04 32.42 0.00 4.52 4.20 10.07 2.16 5.85 0.00 4.94 10.75 12.22 0.00 2.57 3.67 2.88 6.18 5.76 0.00 28 ER3a ExonRegion 0 363.39 572.73 664.26 491.16 328.48 597.45 247.85 570.39 630.18 907.14 491.31 313.85 352.35 390.41 565.43 436.69 464.47 554.19 619.70 387.89 1167.61 988.50 573.93 29 E3_Ab KnownBoundary 0 549.06 652.78 795.15 600.26 391.60 583.36 208.85 683.14 709.71 993.78 571.99 419.99 441.69 512.28 715.99 569.77 521.18 739.69 723.88 585.29 1188.91 1015.92 746.76 30 ER3b ExonRegion 0 309.06 480.27 675.45 530.49 416.18 537.66 210.22 598.38 689.68 966.64 461.92 313.09 323.96 579.41 600.56 522.30 407.30 663.16 541.43 440.79 1106.96 886.66 618.63 31 E3_Da KnownBoundary 0 130.32 243.18 161.17 165.65 328.18 281.03 160.13 178.59 217.36 278.96 191.26 94.08 113.79 263.64 249.46 239.94 162.04 186.42 271.91 233.43 566.56 449.94 341.03 32 E3a_E4b KnownJunction 0 16.23 6.05 11.89 8.46 8.66 2.38 2.16 16.22 8.28 13.73 14.90 0.00 0.00 11.89 13.72 8.54 4.30 12.68 3.58 6.01 5.25 20.82 4.10 33 E3_Db KnownBoundary 0 0.00 0.00 1.12 11.22 28.61 4.88 8.48 23.25 24.16 15.53 13.16 12.60 0.00 0.00 9.64 4.36 3.65 11.11 8.19 3.26 29.59 8.76 8.45 34 E3b_E4b KnownJunction 0 595.96 560.29 692.11 540.32 599.66 773.48 284.23 595.49 714.37 938.72 510.02 311.65 452.73 521.05 642.81 749.03 556.90 657.24 878.71 423.20 1284.17 1584.72 913.81 35 ER3c ExonRegion 0 412.14 485.84 659.36 508.98 561.42 686.17 254.44 579.66 723.78 960.48 525.22 275.51 380.32 552.20 571.55 673.05 509.24 672.24 783.89 412.96 1317.62 1369.63 844.15 36 ER3d ExonRegion 0 14.63 13.88 15.57 27.34 42.24 39.45 11.90 28.36 24.64 25.40 9.16 9.14 9.74 13.14 13.76 13.84 17.29 16.45 14.98 10.74 16.46 12.24 15.43 37 ER4a ExonRegion 0 15.72 15.79 13.81 17.64 55.68 48.65 13.67 27.34 20.29 29.59 12.97 11.58 10.28 12.23 12.29 23.44 9.64 14.10 15.64 8.94 22.38 26.43 14.78 38 E4_Ab KnownBoundary 0 13.41 10.85 17.33 24.41 67.32 26.12 17.84 45.80 21.35 32.72 9.11 0.00 0.00 4.24 15.20 28.11 16.55 12.15 13.27 16.17 13.53 13.47 14.43 39 ER4b ExonRegion 0 524.90 493.89 695.52 553.60 607.39 766.49 229.05 648.98 792.75 1029.18 673.81 325.19 606.06 641.02 711.06 748.12 603.40 771.74 951.57 396.12 1354.06 1483.23 935.09 40 E4_Da KnownBoundary 0 48.01 24.27 15.97 33.26 21.65 40.03 22.43 17.25 23.00 28.45 8.90 0.00 12.01 37.38 28.31 32.56 3.46 17.29 24.00 3.26 12.48 5.51 19.55 41 E4a_E4c KnownJunction 0 511.87 439.59 634.40 486.29 543.89 555.08 198.07 623.46 699.88 933.21 604.84 238.58 339.75 580.85 665.18 552.76 549.04 722.04 739.32 383.06 1134.29 1000.43 700.23 42 ER4c ExonRegion 0 43.04 32.48 35.44 28.94 51.35 37.64 19.34 38.28 39.36 47.14 17.96 13.34 6.54 23.31 20.37 31.39 15.32 29.93 14.72 11.24 27.72 18.30 20.58 43 E4_Ac KnownBoundary 0 40.60 41.31 35.21 42.52 93.63 81.54 34.67 55.16 44.79 51.60 11.69 12.60 0.00 21.90 28.43 34.18 21.41 14.59 22.21 12.21 20.76 23.09 11.44 44 ER4d ExonRegion 0 427.03 442.15 725.18 562.29 515.28 539.93 235.43 677.84 723.47 1003.28 550.25 297.98 370.46 585.02 666.00 602.99 467.47 764.85 803.13 399.21 1104.94 1077.59 715.26 45 E4_Db KnownBoundary 0 53.05 43.22 33.59 35.26 69.52 76.49 26.28 58.08 56.39 80.08 4.26 18.16 6.49 30.67 48.21 19.23 12.44 24.79 4.80 29.98 33.30 17.02 21.94 46 E4b_E4d KnownJunction 0 677.23 467.68 722.45 533.33 459.34 512.60 296.42 617.47 673.55 883.33 512.18 219.97 287.48 618.93 642.19 501.49 507.25 497.27 745.53 340.87 1012.22 1032.09 575.18 47 ER4e ExonRegion 0 35.98 28.23 46.83 21.96 47.68 45.43 24.90 51.04 42.35 65.24 19.44 6.51 5.43 22.18 20.99 21.21 20.42 24.49 19.00 17.23 23.88 21.87 20.09 48 E4_Dc KnownBoundary 0 26.52 31.18 19.31 11.89 49.66 46.68 24.51 31.75 24.28 49.05 17.53 0.00 0.00 20.19 4.45 37.68 4.30 19.73 33.13 6.33 15.94 5.69 24.24 49 E4_Ad KnownBoundary 0 24.75 16.31 29.45 15.45 58.83 39.75 7.42 52.12 34.14 39.57 17.11 6.90 0.00 7.42 8.90 20.25 4.77 8.37 22.02 14.76 15.38 9.06 8.71 50 ER4f ExonRegion 0 58.51 60.14 77.99 52.08 80.65 88.68 34.52 101.11 89.10 124.85 59.09 16.39 23.12 59.40 58.23 77.28 39.14 56.09 80.09 37.54 95.70 76.94 64.19 51 ER4g ExonRegion 0 383.46 555.52 754.88 529.80 448.91 536.14 200.30 596.58 654.50 866.09 477.29 287.89 342.62 434.57 608.93 470.46 439.42 524.54 543.85 344.11 1030.41 883.56 575.69 52 E4_Dd KnownBoundary 0 31.34 34.07 33.53 27.10 46.69 24.82 2.16 53.31 20.46 27.26 16.85 6.15 5.84 20.31 25.22 11.62 0.00 15.88 0.00 13.81 17.79 15.12 14.94 53 E4d_E4e KnownJunction 0 318.43 694.02 967.80 733.51 815.28 934.63 355.47 776.50 774.91 1064.67 590.52 264.09 216.06 455.24 795.23 530.46 473.68 765.56 688.58 443.39 1157.52 1151.37 570.57 54 ER4h ExonRegion 0 31.72 24.11 36.93 19.21 34.40 39.22 14.52 52.74 24.51 33.70 18.08 9.57 4.47 14.10 21.02 12.00 10.94 26.83 15.50 16.41 25.87 20.70 13.58 55 E4_Ae KnownBoundary 0 46.67 9.01 55.02 18.01 49.66 83.47 19.65 43.21 17.42 30.92 7.42 7.65 6.01 14.72 19.66 11.96 0.00 27.15 20.05 5.69 20.45 8.76 4.35 56 ER4i ExonRegion 0 369.29 569.93 870.41 658.90 783.41 1029.08 361.15 737.41 720.56 981.90 637.39 301.93 328.40 534.48 700.15 589.06 528.57 735.20 751.75 403.28 1154.07 1038.91 695.47 57 E4_De KnownBoundary 0 529.13 700.47 825.75 650.27 846.10 1043.26 407.89 757.86 709.28 973.21 528.08 271.59 418.97 550.48 771.37 595.23 472.74 712.58 716.44 421.60 1050.96 1032.76 723.03 58 ER4j ExonRegion 0 311.03 428.69 751.88 521.70 518.02 665.59 233.89 662.67 607.97 809.42 364.57 250.40 401.38 382.64 645.25 476.78 338.12 498.34 496.35 384.18 817.15 789.93 516.94 59 E4f_E5a KnownJunction 0 454.23 520.89 902.78 572.95 622.07 564.79 241.08 749.68 620.42 909.36 358.41 402.88 439.74 417.39 953.71 577.20 331.93 726.18 643.59 457.71 700.62 973.67 628.27 60 ER5a ExonRegion 0 365.49 376.59 667.96 413.03 330.07 373.92 172.22 500.35 476.37 744.29 354.45 228.76 278.22 399.81 678.14 404.52 355.54 468.60 512.95 361.80 786.97 772.20 463.61 61 E5a_E6a KnownJunction 0 609.07 613.51 652.28 374.71 259.17 382.73 114.43 567.15 469.32 749.50 362.51 244.88 294.95 434.75 557.64 320.09 361.20 378.97 413.38 278.55 815.52 489.44 398.90 62 ER6a ExonRegion 0 506.02 630.58 699.67 433.24 410.67 615.56 246.70 600.39 535.95 797.21 413.80 175.93 298.50 377.98 639.03 380.87 347.04 518.49 475.32 336.24 878.02 667.42 420.61 63 E6_Da KnownBoundary 0 205.30 293.30 742.11 455.59 594.40 659.45 276.11 618.00 486.31 815.85 206.95 75.77 177.91 232.50 462.21 173.80 241.70 261.70 220.43 325.21 598.75 388.47 293.48 64 ER6b ExonRegion 0 216.12 203.83 500.31 363.68 301.54 287.52 114.44 448.79 424.17 563.26 367.28 150.77 194.90 291.90 524.43 316.32 305.40 303.81 507.89 257.65 711.85 592.20 405.01 65 ER6c ExonRegion 0 0.00 1.53 3.68 3.41 0.67 0.00 2.65 3.46 2.16 2.87 2.90 1.08 1.17 0.00 2.18 0.00 3.30 2.31 0.00 2.66 1.10 2.08 2.94