Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CNPY3 Gene 0 292.51 134.11 272.78 145.48 146.38 236.60 91.91 162.44 93.54 231.72 586.24 143.17 262.38 490.46 655.13 422.03 448.94 340.08 227.51 176.88 148.74 147.47 158.84 2 372836 Transcript 0 6.78 5.37 7.54 2.75 6.84 13.95 7.06 7.33 4.91 6.39 13.87 0.48 5.21 8.31 9.14 11.33 11.09 13.70 14.02 8.25 7.75 4.57 4.40 3 394142 Transcript 1 14.22 25.52 19.04 16.65 7.98 7.89 4.15 19.59 7.20 6.82 104.03 0.00 6.33 43.38 126.21 52.55 59.09 86.14 36.99 39.76 5.81 16.47 12.29 4 311628 Transcript 0 0.00 0.00 253.27 135.11 0.00 0.00 0.00 165.77 97.57 203.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 191.85 0.00 0.00 0.00 0.00 0.00 5 336842 Transcript 0 0.00 0.00 106.92 48.91 0.00 0.00 0.00 53.19 53.80 87.33 0.00 0.00 0.00 0.00 0.00 0.31 0.00 152.34 0.00 0.00 0.00 0.00 0.00 6 IG22_AR2 ActiveIntergenicRegion 0 13.79 0.90 1.90 4.22 11.50 8.13 7.06 2.29 1.91 2.79 4.00 1.06 2.29 6.54 11.91 7.92 5.37 1.77 1.88 0.95 2.61 1.54 4.35 7 ER1a ExonRegion 0 11.57 2.03 5.56 3.91 0.00 16.18 3.97 1.69 3.29 3.03 13.57 0.96 0.00 8.41 6.83 9.77 11.37 4.11 11.40 1.13 7.54 4.63 2.94 8 E1_Ab KnownBoundary 0 43.93 12.96 23.09 12.79 0.00 46.39 12.23 9.20 17.62 42.23 21.27 6.00 0.00 19.60 13.97 10.34 24.12 58.28 23.34 5.75 19.65 10.10 3.24 9 ER1b ExonRegion 0 62.01 29.56 29.96 17.43 31.70 102.25 31.44 17.18 15.32 46.31 80.46 4.73 4.82 79.61 117.51 66.41 68.85 78.07 62.11 35.96 42.36 26.70 42.69 10 E1_Ac KnownBoundary 1 283.46 99.13 68.89 23.77 123.26 359.28 78.92 30.56 33.07 92.19 205.79 23.56 0.00 122.73 189.75 172.01 204.30 133.40 73.79 81.11 75.62 31.41 88.61 11 ER1c ExonRegion 1 80.33 49.84 84.78 41.37 47.29 96.79 28.94 53.14 34.72 97.60 284.28 44.97 48.03 229.28 278.50 132.64 208.55 141.33 98.94 107.74 77.00 60.91 67.88 12 E1a_E2a KnownJunction 0 108.46 87.68 225.33 114.04 101.70 82.79 43.59 148.52 69.44 219.11 468.01 81.48 123.21 524.17 660.24 378.36 335.86 319.56 211.30 168.81 104.53 154.49 227.07 13 E1a_E3a KnownJunction 1 14.22 25.52 19.04 16.65 7.98 7.89 4.15 19.59 7.20 6.82 104.03 0.00 6.33 43.38 126.21 52.55 59.09 86.14 36.99 39.76 5.81 16.47 12.29 14 ER2a ExonRegion 0 223.19 132.02 228.73 103.54 156.83 226.44 98.21 144.47 87.91 243.28 556.99 94.97 164.23 461.46 569.86 344.43 430.23 313.72 163.12 167.95 162.93 135.82 177.62 15 E2a_E3a KnownJunction 0 313.69 226.80 296.41 128.19 210.70 444.63 139.16 151.23 88.14 298.65 533.45 200.92 320.60 469.78 510.54 222.16 450.21 239.06 128.38 189.77 202.69 163.68 113.87 16 ER3a ExonRegion 0 392.25 255.04 338.55 179.90 242.21 492.34 150.67 208.39 124.75 310.16 835.64 282.26 360.21 671.40 781.45 470.57 633.48 347.66 261.13 301.80 228.32 219.58 176.07 17 E3_Da KnownBoundary 0 264.49 171.15 169.95 104.35 117.32 290.46 93.71 138.38 87.73 153.97 467.70 164.75 186.68 220.73 299.77 267.45 342.59 182.06 154.45 185.23 95.51 108.93 77.94 18 E3a_E3b KnownJunction 0 0.00 0.00 253.27 135.11 0.00 0.00 0.00 165.77 97.57 203.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 191.85 0.00 0.00 0.00 0.00 0.00 19 E3_Ab KnownBoundary 0 386.51 128.14 202.09 100.75 124.36 188.13 74.59 114.31 62.67 139.06 262.43 47.87 93.01 285.83 291.86 218.83 325.85 148.98 95.63 143.56 60.23 111.44 58.73 20 ER3b ExonRegion 0 595.16 278.60 395.79 205.80 293.26 484.86 160.20 225.04 132.90 314.94 894.55 309.12 427.73 855.91 947.55 560.54 734.12 362.16 307.07 333.62 221.25 254.19 169.74 21 ER3c ExonRegion 0 697.21 254.68 446.04 224.37 265.13 354.52 138.79 246.61 150.58 363.19 793.67 259.02 389.48 812.73 899.39 537.50 707.18 419.52 307.73 296.67 239.10 260.35 188.78 22 E3_Db NovelBoundary 0 177.22 36.05 43.38 21.58 27.84 22.60 20.31 18.32 15.51 28.12 94.02 38.86 37.50 85.29 86.78 69.55 111.55 26.99 17.32 35.79 22.98 26.39 20.83 23 E3b_E4a KnownJunction 0 1073.38 277.52 506.52 268.00 293.21 356.61 136.99 284.44 161.75 421.92 1005.36 295.00 329.36 812.41 971.76 689.82 801.21 526.38 365.00 298.81 295.36 285.53 270.77 24 I3 Intron 0 66.91 22.63 19.97 14.84 37.05 27.15 20.55 20.54 12.13 13.63 51.60 20.82 37.95 72.48 65.29 68.41 62.42 24.39 18.25 16.97 8.52 11.44 20.33 25 I3_AR1 ActiveIntronRegion 0 81.32 33.88 36.77 20.05 39.69 34.99 24.46 28.71 16.23 19.55 74.90 20.75 41.22 93.52 94.64 86.93 84.67 38.45 23.78 23.51 12.38 16.12 23.91 26 I3_SR2 SilentIntronRegion 0 53.71 11.89 4.32 12.13 44.59 22.13 18.61 15.38 9.16 9.14 34.38 27.05 41.18 58.57 40.02 55.09 48.04 10.76 15.45 11.91 4.93 8.03 20.81 27 E4_Aa NovelBoundary 0 177.44 37.23 9.20 2.06 32.26 20.78 20.67 20.70 7.70 15.77 28.22 6.30 6.66 48.03 72.44 52.21 53.86 14.05 12.80 27.16 17.05 6.06 26.38 28 ER4a ExonRegion 0 840.12 274.93 542.08 285.18 241.78 350.65 145.05 296.44 156.90 444.06 1165.66 276.23 429.10 897.63 1009.97 719.60 831.88 520.91 375.09 317.02 262.06 289.68 289.09 29 E4_Da KnownBoundary 0 840.22 251.73 462.52 246.16 217.91 322.43 177.49 231.25 106.02 316.97 967.09 337.01 390.56 816.89 1059.40 521.32 772.70 368.81 290.74 309.74 195.28 237.95 245.85 30 E4_Ab KnownBoundary 0 487.20 212.79 442.12 269.43 197.03 340.15 145.74 267.27 113.80 326.45 914.97 361.47 334.56 672.32 998.33 461.84 669.00 343.44 356.90 297.66 232.78 222.16 181.91 31 ER4b ExonRegion 0 621.64 250.98 584.25 332.88 213.28 362.71 170.52 323.00 146.57 426.08 1132.11 403.00 448.48 837.10 1100.42 608.91 832.38 495.89 374.01 346.36 261.32 276.76 239.21 32 ER4c ExonRegion 0 423.36 208.66 597.95 321.75 245.75 456.28 193.82 330.00 172.27 448.83 1131.51 393.98 497.02 921.69 1047.12 593.10 787.61 497.68 342.26 346.58 298.72 257.64 241.27 33 E4b_E5a KnownJunction 0 527.95 219.37 645.63 327.73 370.54 619.02 274.34 339.64 203.35 480.43 1217.68 426.14 619.60 1156.34 1190.93 673.33 817.95 520.20 314.55 401.34 302.40 281.67 297.49 34 ER5a ExonRegion 0 373.92 223.33 620.96 353.16 319.77 439.77 162.49 330.85 165.76 426.01 1047.14 406.71 686.85 948.25 1188.65 887.58 742.59 676.93 414.37 370.64 244.61 282.60 304.54 35 E5a_E6a KnownJunction 0 375.77 378.88 628.19 338.32 351.19 434.30 202.57 310.85 171.53 462.89 871.80 351.71 705.64 1043.56 1664.63 1164.65 754.46 736.42 584.96 380.24 208.31 255.04 411.19 36 ER6a ExonRegion 0 358.02 256.93 452.35 223.66 249.00 382.19 162.77 243.05 143.97 352.76 999.50 273.44 525.48 820.10 1051.52 656.97 819.97 568.25 333.78 281.55 235.84 221.15 243.47 37 E6_Da KnownBoundary 0 248.49 109.85 148.90 100.32 110.78 122.60 62.67 73.69 64.64 101.97 365.46 71.87 164.11 189.06 332.04 366.66 227.02 234.63 228.43 116.07 83.03 151.55 129.67 38 E6a_E6b KnownJunction 0 0.00 0.00 213.83 97.82 0.00 0.00 0.00 106.38 107.61 174.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 304.68 0.00 0.00 0.00 0.00 0.00 39 E6_Ab KnownBoundary 0 271.31 94.33 240.91 119.96 71.48 104.43 60.59 153.08 114.35 232.46 271.33 74.57 144.31 159.28 297.30 283.60 198.88 427.01 108.90 93.96 52.57 71.64 87.33 40 ER6b ExonRegion 0 612.52 209.46 410.99 202.25 204.43 277.64 134.51 243.02 183.04 351.18 757.31 213.01 571.25 753.27 1040.39 724.60 578.32 736.14 345.93 228.51 183.79 234.60 251.38 41 ER6c ExonRegion 0 1090.52 294.27 499.32 279.56 251.66 432.52 161.43 284.50 181.30 389.96 1158.90 243.41 710.28 952.65 1465.54 1074.14 944.46 835.78 520.50 269.12 244.32 290.68 334.42 42 E6_Db KnownBoundary 0 553.21 240.75 463.38 215.52 223.85 336.97 136.07 269.12 157.20 338.33 1125.86 149.45 426.43 877.81 1195.38 438.52 607.76 467.88 332.15 244.10 278.86 189.15 216.57 43 ER6d ExonRegion 0 230.87 110.46 273.92 149.04 139.71 206.62 85.33 189.57 107.39 249.73 599.06 106.17 229.55 490.38 734.37 457.37 448.39 344.08 254.65 167.05 149.50 150.35 162.25 44 E6_Dc NovelBoundary 0 14.00 28.68 29.04 20.38 64.18 43.10 38.02 36.02 24.39 40.86 65.44 0.00 42.21 26.49 27.94 44.35 48.62 77.43 67.86 50.49 20.20 13.72 16.56 45 E6_Dd NovelBoundary 0 14.60 16.18 35.69 15.08 36.33 66.67 21.20 26.04 29.86 35.19 24.64 5.85 27.27 10.01 13.35 29.99 18.23 59.20 45.74 42.89 15.01 21.06 24.07 46 ER6e ExonRegion 0 2.00 8.70 9.53 1.59 13.68 11.72 10.15 12.96 6.52 9.75 14.17 0.00 10.42 8.21 11.44 12.88 10.82 23.30 16.63 15.37 7.96 4.51 5.87 47 I6 Intron 0 50.32 35.61 51.43 29.48 46.70 65.72 37.65 46.82 29.62 57.04 46.91 10.69 30.21 31.85 59.27 41.91 52.44 83.62 61.90 64.03 16.76 20.16 26.73 48 I6_AR1 ActiveIntronRegion 0 45.07 33.96 55.29 28.44 41.27 63.93 33.42 48.34 30.73 60.61 49.12 9.03 28.90 31.65 54.17 39.15 51.47 89.53 56.45 64.05 17.36 19.27 26.21 49 I6_SR1 SilentIntronRegion 0 83.83 46.34 27.74 36.35 81.30 77.60 64.65 37.73 22.97 35.24 33.56 21.28 38.77 33.43 91.95 59.66 59.10 47.41 96.78 64.64 13.15 26.00 30.27 50 Ix Intron 0 29.91 33.11 29.17 24.33 20.55 22.54 14.24 24.53 18.66 39.91 18.41 9.83 9.49 22.16 35.23 22.83 30.42 33.86 31.32 39.87 6.77 15.36 23.46 51 Ix_SR1 SilentIntronRegion 0 30.28 33.52 29.53 24.62 20.80 22.81 14.41 24.83 18.89 40.39 18.63 9.95 9.61 22.41 35.65 23.11 30.79 34.26 31.70 40.35 6.85 15.55 23.74 52 Ix Intron 0 43.72 47.70 48.72 29.28 27.06 44.20 25.07 34.92 23.76 54.43 27.04 2.19 9.14 16.65 42.53 32.00 40.49 61.67 72.69 42.58 9.01 11.66 21.49 53 Ix_SR1 SilentIntronRegion 0 43.91 47.90 48.93 29.41 27.18 44.38 25.18 35.07 23.86 54.66 27.13 2.20 9.18 16.72 42.68 32.14 40.65 61.93 72.99 42.76 9.05 11.71 21.58 54 Ix Intron 0 86.69 56.15 40.21 19.70 47.32 45.82 25.08 34.39 15.53 38.42 30.21 7.85 11.08 18.54 33.88 29.84 31.26 41.49 51.24 31.56 10.81 14.03 22.11 55 Ix_SR1 SilentIntronRegion 0 86.69 56.15 40.21 19.70 47.32 45.82 25.08 34.39 15.53 38.42 30.21 7.85 11.08 18.54 33.88 29.84 31.26 41.49 51.24 31.56 10.81 14.03 22.11 56 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00