Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KLHDC3 Gene 0 211.94 309.97 426.92 268.54 325.91 526.03 201.90 286.63 218.24 482.13 292.08 55.45 51.43 246.46 284.85 257.61 226.75 372.35 424.92 299.54 165.62 146.26 106.45 2 432243 Transcript 0 1.66 3.21 3.02 1.36 4.49 9.04 1.76 6.66 6.61 7.10 2.18 2.78 0.00 6.10 2.77 2.33 1.11 5.79 3.21 2.87 3.69 1.88 2.31 3 326974 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394096 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 244670 Transcript 0 0.00 0.00 0.00 8.82 0.00 0.00 2.25 12.12 9.55 4.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 3.95 0.00 3.15 0.00 0.00 6 332245 Transcript 0 0.00 14.93 23.00 0.00 4.33 33.33 10.95 2.14 1.56 6.15 0.00 0.00 0.00 2.47 6.30 4.36 0.00 2.57 0.00 6.01 0.00 2.45 0.00 7 426116 Transcript 0 0.78 1.38 0.04 0.00 9.38 5.40 1.52 0.11 0.04 0.15 1.43 0.00 1.35 1.00 0.76 0.04 1.33 2.37 3.47 5.29 0.78 0.73 0.04 8 ER1a ExonRegion 0 5.57 7.83 11.48 5.91 20.41 39.39 19.22 2.94 6.27 13.13 19.11 0.00 0.00 8.66 15.15 3.96 13.57 3.70 9.32 10.17 10.12 4.01 8.05 9 ER1b ExonRegion 1 110.86 200.78 100.02 50.31 283.68 888.89 270.38 35.68 50.64 108.79 152.88 8.06 0.00 130.32 136.41 181.98 168.47 105.88 229.61 174.37 97.93 65.16 70.86 10 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E4a KnownJunction 0 3.56 12.70 17.68 3.06 11.04 41.68 11.17 3.82 7.38 28.77 19.11 18.01 0.00 14.07 10.75 8.03 7.67 5.26 14.78 22.18 15.57 5.88 0.00 12 I1_AR1 ActiveIntronRegion 0 3.39 1.94 0.00 0.00 20.28 31.34 10.06 0.00 0.00 0.00 3.61 2.31 3.65 11.62 0.00 11.10 3.08 3.24 3.11 8.23 0.00 1.99 22.71 13 ER2a ExonRegion 0 1.57 2.76 0.08 0.00 18.77 10.80 3.05 0.21 0.08 0.30 2.86 0.00 2.70 2.00 1.51 0.08 2.67 4.73 6.94 10.58 1.57 1.46 0.08 14 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 4.98 9.62 9.06 4.09 13.47 27.13 5.29 19.99 19.83 21.29 6.53 8.34 0.00 18.31 8.30 6.99 3.34 17.36 9.64 8.62 11.06 5.63 6.94 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER4a ExonRegion 0 30.50 80.80 256.98 139.57 106.13 152.33 49.65 170.04 158.95 329.20 255.19 32.05 29.51 185.39 181.66 221.68 215.05 400.18 325.19 252.96 150.90 96.28 100.76 18 E4a_E5a KnownJunction 1 81.94 262.06 303.33 203.04 604.84 811.58 276.64 282.10 252.46 464.15 378.62 49.52 39.61 218.55 192.97 156.03 333.05 457.15 291.11 342.66 199.79 110.22 71.88 19 E4a_E6a KnownJunction 0 0.00 14.93 23.00 0.00 4.33 33.33 10.95 2.14 1.56 6.15 0.00 0.00 0.00 2.47 6.30 4.36 0.00 2.57 0.00 6.01 0.00 2.45 0.00 20 ER5a ExonRegion 0 111.46 453.60 368.77 247.44 370.73 912.59 308.98 246.69 228.21 485.40 335.92 84.24 73.42 298.95 293.21 246.59 282.05 403.81 383.77 337.50 219.64 148.49 105.55 21 E5a_E6a KnownJunction 0 210.04 515.57 569.14 409.84 332.34 646.05 209.24 357.02 272.88 581.02 370.36 87.18 133.43 379.25 463.44 416.39 286.11 542.87 606.51 495.04 266.20 209.91 135.56 22 E5a_E7a KnownJunction 0 0.00 0.00 0.00 8.82 0.00 0.00 2.25 12.12 9.55 4.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 3.95 0.00 3.15 0.00 0.00 23 ER6a ExonRegion 0 184.28 312.29 611.26 425.77 385.84 567.26 233.49 352.59 276.76 657.80 375.87 101.52 86.04 350.84 359.03 364.21 264.16 607.83 497.49 451.14 227.55 201.45 157.79 24 E6a_E7a KnownJunction 0 209.30 366.65 849.91 597.09 563.58 790.34 385.23 461.10 324.82 786.73 386.52 92.58 66.07 345.23 426.36 388.79 288.92 609.65 797.76 431.19 242.17 272.80 158.35 25 ER7a ExonRegion 0 147.16 423.15 668.85 464.04 510.92 739.53 306.37 354.96 334.78 725.37 480.65 97.59 140.96 421.80 457.99 434.10 324.22 567.57 736.93 503.72 266.13 236.33 160.66 26 E7a_E8a KnownJunction 0 153.88 436.90 489.04 370.58 268.93 554.96 243.34 290.93 272.60 587.18 333.08 68.87 114.93 317.44 400.03 271.81 292.10 482.35 379.40 415.65 190.40 200.60 118.74 27 ER8a ExonRegion 0 247.41 545.43 467.77 309.78 401.94 632.00 258.77 333.03 281.35 600.95 334.35 71.72 56.94 320.16 333.17 269.44 270.44 454.12 444.97 376.59 227.59 169.21 120.62 28 E8a_E9a KnownJunction 0 175.96 456.23 401.20 293.80 283.79 478.47 237.55 329.70 249.07 489.02 273.49 59.72 59.09 285.77 412.76 177.65 157.92 360.56 279.54 295.30 157.04 108.02 112.94 29 ER9a ExonRegion 0 284.34 592.33 503.51 315.86 536.44 809.38 377.42 356.36 262.58 566.14 372.87 59.42 54.56 369.57 330.34 321.98 257.85 333.78 482.75 367.06 217.10 189.62 141.57 30 E9a_E10a KnownJunction 0 438.67 785.72 646.90 325.03 869.86 1221.46 600.22 392.79 259.69 643.05 372.57 61.52 81.65 424.45 335.00 378.02 297.52 296.60 531.12 350.59 192.62 203.91 128.90 31 ER10a ExonRegion 0 333.09 568.45 569.51 383.07 688.01 885.56 343.00 396.62 282.21 609.51 315.81 72.41 86.27 319.98 369.95 350.96 262.89 458.70 576.70 366.80 179.31 205.52 154.89 32 E10a_E11a KnownJunction 0 426.52 563.32 884.77 668.88 849.15 897.21 402.28 600.46 423.06 879.92 367.78 51.92 92.36 418.80 424.50 425.10 287.33 747.32 1382.72 482.00 186.75 280.33 196.51 33 ER11a ExonRegion 0 320.42 495.64 963.80 621.66 622.18 832.69 337.65 623.79 417.35 947.13 583.97 111.40 80.62 407.92 499.45 533.58 392.18 722.35 1153.83 526.77 268.91 298.73 206.83 34 E11a_E12a KnownJunction 0 460.75 438.74 996.62 548.65 583.96 675.41 353.92 649.09 456.42 1052.45 510.23 173.31 75.16 388.25 481.37 450.65 408.23 600.70 677.57 559.59 290.79 263.92 199.15 35 ER12a ExonRegion 0 495.72 459.13 868.59 546.84 507.00 700.81 292.18 582.42 443.67 942.25 478.72 90.92 103.18 343.51 450.36 373.70 350.86 556.15 587.56 463.40 228.74 270.07 143.93 36 E12a_E13a KnownJunction 0 1063.89 727.30 959.16 664.15 804.50 1041.16 484.51 568.55 431.82 933.08 401.84 61.22 133.43 399.73 531.18 494.91 325.20 707.61 947.32 442.75 209.55 315.41 225.10 37 I12 Intron 0 46.85 20.06 15.04 24.02 56.84 37.31 18.03 23.82 16.30 25.29 13.00 8.48 6.93 13.06 12.14 18.65 12.02 11.95 10.53 13.24 11.36 16.58 9.22 38 I12_AR1 ActiveIntronRegion 0 22.18 22.55 12.53 20.45 63.05 50.09 20.63 21.40 15.90 24.04 15.32 9.60 16.16 15.73 15.11 20.79 11.88 16.19 17.08 13.30 12.74 16.71 8.57 39 I12_AR2 ActiveIntronRegion 0 34.37 33.51 13.48 36.93 84.09 35.28 32.09 29.88 11.59 32.39 9.85 23.50 20.77 9.36 23.62 20.52 22.48 12.93 18.35 22.29 9.44 22.12 7.69 40 I12_AR3 ActiveIntronRegion 0 33.78 36.12 12.45 42.03 78.77 32.71 23.99 36.99 16.50 40.42 13.92 12.99 7.13 3.96 18.92 6.54 11.75 14.26 4.71 17.02 8.37 24.00 3.52 41 I12_SR1 SilentIntronRegion 0 22.70 18.91 2.67 10.47 37.23 32.50 15.25 15.49 8.08 12.76 6.21 20.36 9.45 5.25 4.67 7.46 1.55 3.04 6.26 6.87 7.14 11.14 2.67 42 I12_AR4 ActiveIntronRegion 0 67.83 17.75 20.22 28.33 57.27 32.80 16.63 26.60 19.20 28.57 13.99 3.50 0.91 14.74 11.99 21.51 14.76 12.33 8.48 14.50 12.19 17.53 11.88 43 E13_Aa NovelBoundary 0 110.32 30.65 26.43 60.17 77.84 41.79 10.60 35.16 24.10 40.29 12.58 6.30 13.64 11.77 25.22 35.38 12.81 33.00 36.14 20.13 27.86 28.17 15.19 44 ER13a ExonRegion 0 644.58 591.77 875.76 523.15 593.19 856.02 413.94 536.48 390.75 845.37 401.41 96.82 86.64 353.70 488.99 449.12 347.25 653.50 957.75 460.11 207.75 234.00 209.73 45 E13_Da KnownBoundary 0 605.51 664.22 977.52 520.51 580.73 830.66 451.39 627.24 412.64 876.51 344.35 122.29 85.22 334.34 392.98 432.11 344.65 743.09 920.50 484.49 222.77 269.67 207.94 46 E13a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER13b ExonRegion 0 309.08 305.35 596.73 343.57 347.98 514.06 196.05 405.91 275.13 644.45 361.17 54.93 54.33 287.15 406.45 320.63 267.78 467.30 507.81 359.07 185.35 172.64 122.63 48 E13_Ab KnownBoundary 0 345.17 142.34 214.45 172.87 96.35 150.82 85.98 211.28 154.37 403.14 318.13 30.91 60.39 202.13 282.09 242.84 252.45 181.03 303.07 236.05 171.49 160.49 71.28 49 ER13c ExonRegion 0 149.68 88.84 245.07 159.88 69.99 140.40 48.41 218.38 157.94 400.63 220.29 40.99 37.08 169.16 223.76 164.30 178.97 150.65 206.35 225.66 109.50 145.78 42.86 50 E13_Db KnownBoundary 0 74.61 80.84 256.85 128.52 86.76 158.03 42.84 199.87 129.63 317.78 166.57 70.52 34.58 141.68 158.85 93.57 97.90 101.19 140.05 237.52 68.63 124.18 16.05 51 ER13d ExonRegion 0 288.66 129.89 218.44 146.49 196.30 268.69 87.94 200.48 109.64 251.22 181.01 28.54 21.59 125.02 170.16 135.23 147.72 147.46 308.16 131.82 91.38 98.79 48.54 52 ER13e ExonRegion 0 1.06 1.53 2.76 2.04 2.68 0.46 0.00 2.59 1.24 0.00 0.48 0.00 0.00 0.41 0.00 2.23 3.30 0.92 0.00 0.00 0.00 0.00 0.00