Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRICKLE4 Gene 0 37.73 13.86 36.94 21.86 25.88 48.69 12.61 29.64 30.31 27.26 12.72 6.51 2.99 10.79 10.54 10.00 9.57 10.12 16.21 14.14 49.87 10.04 10.77 2 456057 Transcript 0 12.56 20.35 12.82 15.12 21.06 22.49 9.51 19.23 16.27 16.24 6.64 9.47 4.17 4.97 7.55 7.30 7.88 4.13 8.53 12.16 11.42 5.89 6.52 3 458694 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 487182 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 359201 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 335515 Transcript 0 13.34 3.25 21.58 8.32 14.18 36.01 8.00 10.64 16.68 13.87 6.25 0.00 1.44 2.99 1.75 4.40 2.67 5.07 4.80 9.78 55.09 6.40 8.01 7 394263 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 394259 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 394260 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 463606 Transcript 0 9.45 5.85 16.12 6.89 20.50 12.06 6.21 12.05 8.72 14.98 4.20 1.32 0.00 6.55 5.24 7.20 2.41 4.27 7.12 8.42 7.13 1.55 0.08 11 483200 Transcript 0 2.92 1.62 12.89 1.16 3.12 6.15 1.43 6.93 5.59 5.54 3.70 4.05 0.00 6.02 5.86 0.80 2.35 3.49 1.50 4.43 13.26 0.00 1.79 12 ER1a ExonRegion 0 2.01 2.25 13.74 7.13 3.65 23.82 3.12 7.46 9.26 9.88 2.49 0.00 0.00 1.84 1.30 1.10 3.25 1.92 9.43 3.21 14.02 3.08 4.45 13 E1_Ab KnownBoundary 0 11.11 0.00 0.00 0.00 0.00 12.49 2.03 0.00 1.59 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 14 E1_Ac KnownBoundary 0 5.85 0.00 13.72 6.83 3.57 14.31 1.90 6.37 9.87 9.43 0.00 0.00 0.00 5.06 0.00 0.00 3.65 1.91 0.00 3.26 11.80 0.00 7.68 15 ER1b ExonRegion 0 10.37 0.00 8.21 2.73 2.68 18.89 5.16 5.19 8.03 6.42 3.29 0.00 0.00 6.01 0.00 0.30 2.97 0.00 0.00 2.13 13.22 0.00 6.46 16 ER1c ExonRegion 0 18.78 1.62 9.96 3.15 4.46 18.24 6.79 8.51 9.28 7.35 2.83 0.00 0.00 5.33 0.00 4.12 3.30 0.43 1.72 1.53 13.56 0.00 11.97 17 E1a_E2b KnownJunction 0 89.28 0.00 8.75 3.46 12.39 16.35 10.51 18.20 9.40 7.66 0.00 0.00 0.00 0.00 0.00 4.27 0.00 2.28 8.85 0.00 19.95 0.00 12.89 18 ER1d ExonRegion 0 47.97 2.03 10.62 4.72 8.03 17.48 8.47 18.09 10.79 8.49 0.64 0.00 0.00 0.00 0.00 5.15 0.66 1.85 6.37 0.14 12.34 0.00 13.51 19 Ix Intron 0 1.81 0.87 4.70 1.74 1.15 9.43 1.13 2.21 0.79 4.39 4.14 0.00 0.00 0.70 0.88 0.00 2.83 0.00 2.73 2.74 15.11 2.68 2.52 20 Ix_AR1 ActiveIntronRegion 0 1.85 0.89 4.78 1.77 1.17 9.58 1.14 2.25 0.80 4.47 4.21 0.00 0.00 0.71 0.89 0.00 2.88 0.00 2.78 2.78 15.37 2.71 2.56 21 E2_Aa NovelBoundary 0 3.78 0.00 20.99 8.99 0.00 5.51 1.99 3.57 13.89 12.06 2.00 0.00 0.00 2.47 0.00 4.36 4.77 2.20 0.00 12.40 39.35 2.82 7.68 22 ER2a ExonRegion 0 13.34 3.25 21.58 8.32 14.18 36.01 8.00 10.64 16.68 13.87 6.25 0.00 1.44 2.99 1.75 4.40 2.67 5.07 4.80 9.78 55.09 6.40 8.01 23 E2_Ab KnownBoundary 0 58.53 9.54 34.77 18.25 28.10 51.56 14.49 16.18 21.27 29.82 4.84 0.00 0.00 4.41 0.00 10.94 12.53 20.27 22.40 9.65 59.49 17.70 4.35 24 ER2b ExonRegion 0 29.95 3.27 30.45 17.33 13.99 46.77 9.57 22.22 24.46 32.17 6.37 0.84 1.21 5.52 2.78 5.96 5.32 12.51 13.49 12.00 63.73 7.73 12.89 25 E2a_E3a KnownJunction 0 32.38 15.33 47.19 35.96 26.66 75.30 19.56 30.60 50.17 48.78 9.58 6.00 0.00 0.00 0.00 10.85 12.72 28.11 30.40 12.53 110.58 12.98 7.68 26 ER3a ExonRegion 0 27.35 12.67 49.96 27.89 30.67 69.83 16.70 26.86 42.85 44.99 12.64 3.00 0.00 0.25 4.69 8.92 24.88 22.17 27.93 13.26 102.56 13.94 12.65 27 ER3b ExonRegion 0 33.51 7.87 39.13 21.79 39.54 71.62 16.70 27.84 47.96 33.70 7.57 5.85 1.50 6.22 4.94 8.69 16.38 10.99 14.98 16.86 89.24 15.14 19.39 28 E3_Da KnownBoundary 0 36.15 15.26 30.34 11.89 52.46 81.60 24.55 36.10 28.82 21.62 4.69 5.40 0.00 7.42 4.45 0.00 7.39 7.05 8.28 6.52 75.06 14.76 24.93 29 E3a_E3c KnownJunction 0 0.00 0.00 5.88 2.96 10.61 5.22 6.76 8.71 17.68 6.93 7.21 0.00 0.00 0.00 0.00 4.02 15.52 0.00 0.00 0.00 14.46 3.06 0.00 30 E3a_E3e KnownJunction 0 2.82 0.00 6.86 6.79 0.00 0.00 0.00 4.27 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 14.76 2.76 4.35 31 ER3c ExonRegion 0 44.12 10.45 26.66 12.21 64.11 68.49 14.60 34.35 32.07 19.57 3.27 6.04 0.00 3.46 2.36 2.49 8.42 3.71 11.58 12.77 47.99 10.98 11.66 32 E3_Ac KnownBoundary 0 74.61 24.34 32.58 26.50 59.93 67.69 16.03 50.23 43.98 28.21 4.79 18.91 0.00 4.94 0.00 0.00 8.60 2.57 8.28 8.31 52.26 19.23 22.02 33 ER3d ExonRegion 0 65.27 13.13 40.56 22.75 51.05 84.07 18.83 41.55 43.78 34.04 7.64 3.40 3.03 8.86 2.86 10.94 12.71 9.09 22.07 15.63 66.23 11.31 16.63 34 E3_Ad KnownBoundary 0 47.64 6.45 29.04 13.95 21.05 91.65 15.85 25.88 28.53 22.27 9.05 11.70 6.82 0.00 5.19 4.36 13.37 10.94 27.29 12.27 81.30 2.63 0.00 35 E3_Ae KnownBoundary 0 23.26 0.00 27.65 14.95 23.09 68.60 15.68 26.21 24.88 29.12 5.26 0.00 0.00 4.71 0.00 8.72 4.77 1.66 23.06 12.02 32.19 8.70 0.00 36 ER3e ExonRegion 0 37.04 5.42 43.19 23.28 30.10 100.55 23.39 38.17 44.67 40.33 8.54 6.85 4.69 6.77 4.35 8.92 13.48 10.47 37.16 17.73 85.58 9.55 2.94 37 ER3f ExonRegion 0 52.10 9.98 49.11 28.10 29.83 77.65 25.08 34.92 45.40 50.53 6.36 8.78 2.24 7.06 11.96 13.78 7.84 7.58 26.41 10.70 99.21 9.99 13.91 38 E3b_E4b KnownJunction 0 49.27 14.73 52.51 33.03 17.74 63.66 29.50 31.13 49.62 52.25 9.48 12.60 0.00 0.00 5.69 4.19 13.65 6.84 12.24 3.07 105.58 5.63 8.02 39 Ix Intron 0 5.84 2.31 7.71 10.22 15.65 4.47 3.23 4.60 6.87 15.55 3.77 5.75 0.00 3.46 8.20 4.83 2.14 5.22 10.86 6.91 2.51 1.69 0.48 40 Ix_AR2 ActiveIntronRegion 0 7.19 2.85 9.50 12.59 19.23 5.50 3.97 5.67 8.46 19.14 4.25 7.08 0.00 4.26 10.10 5.93 2.64 6.43 13.38 8.09 2.64 2.08 0.59 41 E4_Aa NovelBoundary 0 27.19 2.70 21.94 11.42 30.05 14.99 7.64 14.01 23.41 23.13 0.00 0.00 0.00 9.36 10.51 4.36 0.00 10.49 14.12 9.27 5.93 0.00 0.00 42 ER4a ExonRegion 0 9.45 5.85 16.12 6.89 20.50 12.06 6.21 12.05 8.72 14.98 4.20 1.32 0.00 6.55 5.24 7.20 2.41 4.27 7.12 8.42 7.13 1.55 0.08 43 E4_Ab KnownBoundary 0 7.41 5.00 13.96 5.53 8.49 8.18 6.23 12.98 9.92 13.83 0.00 0.00 0.00 4.59 18.91 7.60 0.00 10.74 26.26 6.52 13.34 0.00 0.00 44 ER4b ExonRegion 0 41.97 9.94 53.12 29.56 28.34 51.68 15.23 47.01 44.86 41.64 5.09 8.35 2.44 18.00 11.93 12.47 4.79 11.40 23.02 18.13 89.73 12.09 8.69 45 E4_Ac KnownBoundary 0 76.24 5.39 73.65 48.61 34.30 62.86 5.39 56.02 51.39 35.57 0.00 5.25 6.01 24.25 0.00 8.20 8.23 8.75 33.32 18.34 114.04 14.76 12.98 46 ER4c ExonRegion 0 67.09 8.04 53.12 33.84 23.19 64.66 16.19 31.69 39.04 34.88 7.15 12.07 0.36 17.59 17.36 15.99 7.15 10.41 26.59 15.51 92.49 14.71 12.50 47 E4_Da NovelBoundary 0 5.93 5.85 12.80 2.06 27.50 14.37 7.86 10.43 4.66 2.71 4.84 0.00 5.84 5.42 19.41 7.52 0.00 4.19 7.72 6.46 3.03 0.00 0.00 48 E4a_E5a KnownJunction 0 56.60 2.50 40.24 12.22 25.72 64.45 7.64 31.54 34.46 34.11 2.37 0.00 0.00 2.47 4.94 26.75 18.33 17.37 13.65 0.00 78.77 5.45 12.80 49 Ix Intron 0 10.22 4.71 13.75 9.02 7.24 7.79 4.35 8.46 6.76 9.24 4.11 1.77 0.75 9.26 9.66 9.19 3.83 5.15 6.77 5.34 5.11 1.61 0.00 50 Ix_SR1 SilentIntronRegion 0 10.29 4.75 13.84 9.09 7.28 7.85 4.38 8.51 6.81 9.32 4.14 1.78 0.75 9.34 9.73 9.26 3.86 5.19 6.82 5.38 5.15 1.62 0.00 51 E5_Aa NovelBoundary 0 7.26 0.00 20.16 13.02 7.81 2.27 2.03 27.48 15.94 22.05 0.00 6.30 0.00 5.24 13.35 7.52 0.00 17.29 10.92 12.02 6.12 0.00 0.00 52 ER5a ExonRegion 0 34.96 6.41 55.75 24.34 22.19 49.21 14.27 44.35 37.45 37.25 7.30 6.93 0.00 7.47 13.58 14.62 15.22 19.56 31.55 13.84 92.89 5.88 8.36 53 E5_Da KnownBoundary 0 50.75 5.46 90.59 51.68 25.64 61.61 23.27 64.98 48.61 46.42 2.21 0.00 0.00 13.83 8.90 12.13 12.25 32.54 21.27 17.90 92.91 12.12 14.77 54 ER5b ExonRegion 0 57.56 5.42 59.03 27.73 26.58 48.50 21.08 54.58 45.24 31.64 8.69 4.91 3.31 13.33 18.04 17.38 6.46 18.09 31.29 15.22 90.96 10.17 11.48 55 E5_Db NovelBoundary 0 9.63 2.70 13.10 7.13 0.00 15.05 2.25 9.28 8.04 10.85 0.00 0.00 6.82 7.24 19.90 0.00 11.97 15.09 9.13 5.05 0.00 3.12 0.00 56 E5b_E6a KnownJunction 0 40.16 6.05 46.27 13.29 11.54 13.69 12.41 51.18 35.59 29.87 7.00 0.00 0.00 4.83 6.30 16.15 0.00 21.31 44.61 11.89 57.08 0.00 0.00 57 E6_Aa NovelBoundary 0 0.00 0.00 0.00 7.99 8.15 0.00 4.42 1.73 11.43 11.90 10.74 12.60 6.49 4.89 9.64 0.00 0.00 1.95 0.00 3.13 0.00 0.00 0.00 58 ER6a ExonRegion 0 28.75 4.61 50.56 19.69 14.57 38.64 7.02 38.30 43.43 31.83 10.82 5.51 0.96 12.24 10.80 6.96 7.29 9.92 20.67 16.45 52.43 6.09 5.24 59 E6_Da KnownBoundary 0 0.00 0.00 12.57 3.83 7.56 15.79 1.99 6.41 15.77 7.01 7.11 5.85 0.00 4.77 0.00 4.36 3.55 1.99 0.00 6.39 20.70 0.00 4.35 60 E6a_E6b KnownJunction 0 0.00 0.00 1.60 3.86 0.00 0.00 0.00 1.77 1.79 1.18 2.53 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 5.68 0.00 3.76 61 E6a_E6c KnownJunction 0 49.86 5.99 39.03 11.02 22.58 62.80 8.48 27.19 37.09 32.50 2.05 0.00 0.00 9.54 4.45 8.72 0.00 12.44 28.05 12.08 30.15 10.84 8.54 62 ER6b ExonRegion 0 2.92 1.62 12.89 1.16 3.12 6.15 1.43 6.93 5.59 5.54 3.70 4.05 0.00 6.02 5.86 0.80 2.35 3.49 1.50 4.43 13.26 0.00 1.79 63 E6_Ab KnownBoundary 0 0.00 2.89 5.20 3.80 0.00 2.33 0.00 5.71 3.18 5.64 2.68 0.00 0.00 2.41 8.90 0.00 4.58 4.81 8.85 12.14 24.53 0.00 3.33 64 ER6c ExonRegion 0 4.19 1.97 2.05 1.33 3.13 7.56 1.06 2.49 2.88 5.44 2.77 0.00 0.00 4.11 5.33 2.15 4.87 1.78 1.60 1.76 17.52 0.00 1.54 65 E6_Db KnownBoundary 0 3.19 2.96 0.00 5.63 7.81 22.54 0.00 0.00 12.07 9.48 15.74 0.00 0.00 2.18 8.90 11.62 0.00 0.00 4.80 3.00 23.48 0.00 4.35 66 E6_Dc KnownBoundary 0 18.08 3.35 8.81 4.00 29.37 42.87 6.76 2.46 10.65 4.97 7.90 7.65 0.00 4.71 17.80 17.43 18.61 14.47 14.40 0.00 35.89 5.69 25.61 67 ER6d ExonRegion 0 17.44 3.17 9.51 2.07 13.49 33.45 5.51 3.04 18.97 9.45 11.67 3.98 0.00 9.55 13.00 21.04 12.02 10.05 14.78 2.30 32.88 4.58 17.38 68 E6_Ac KnownBoundary 0 25.34 0.00 14.93 7.03 31.32 15.56 4.11 17.95 19.73 9.48 13.53 0.00 0.00 20.07 15.82 12.65 0.00 9.41 13.65 9.01 26.01 6.00 20.06 69 ER6e ExonRegion 0 30.04 1.80 15.51 6.87 22.44 31.03 7.33 13.36 24.18 12.75 10.56 4.33 0.00 17.37 16.29 21.72 11.93 12.22 19.11 5.16 35.43 8.98 25.75 70 ER6f ExonRegion 0 58.53 12.92 76.50 32.78 33.20 87.01 14.57 48.98 59.07 45.97 28.73 7.31 2.67 27.46 20.59 21.15 14.33 18.62 28.37 19.18 80.97 21.50 17.25 71 E6_Dd KnownBoundary 0 55.19 20.85 130.18 59.53 44.74 95.74 17.40 80.87 65.42 53.91 24.80 18.46 0.00 37.73 4.45 19.82 11.87 41.08 39.62 26.40 87.48 39.19 15.02 72 ER6g ExonRegion 0 94.23 12.21 111.20 67.12 43.59 100.05 18.91 74.96 80.97 62.40 49.35 13.95 4.40 34.86 27.60 31.74 28.32 32.41 38.49 24.80 117.09 28.05 27.46 73 E6_De KnownBoundary 0 109.87 8.55 79.54 56.97 27.33 68.71 21.07 40.50 63.54 51.04 28.11 0.00 6.82 16.72 43.02 12.05 9.44 30.80 40.00 33.94 87.11 30.00 17.33 74 ER6h ExonRegion 0 67.03 7.53 44.87 24.10 22.95 58.38 14.48 27.46 28.25 26.80 31.09 1.32 2.87 18.02 19.69 13.29 17.61 16.80 19.14 10.34 64.05 14.61 17.49 75 E6f_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 Ix Intron 0 21.72 18.50 14.88 12.46 11.61 7.96 9.11 13.63 12.27 9.23 4.70 3.88 5.95 8.72 10.17 12.58 9.43 10.01 14.49 14.18 13.29 6.39 7.46 77 Ix_AR1 ActiveIntronRegion 0 8.96 12.20 9.35 10.75 9.44 8.41 8.88 11.36 12.99 9.35 3.75 1.39 4.58 9.71 7.23 11.54 6.40 10.05 10.68 12.77 15.17 6.25 7.26 78 Ix_AR2 ActiveIntronRegion 0 41.91 28.69 23.78 15.43 15.24 7.46 9.70 17.46 11.48 9.27 6.29 7.81 8.23 7.44 14.95 14.51 14.33 10.22 20.74 16.74 10.76 6.78 7.97 79 ER7a ExonRegion 0 23.18 5.40 13.02 7.10 9.25 17.41 5.17 6.93 2.99 4.18 6.42 0.00 1.88 14.59 25.23 8.75 3.08 11.65 8.34 2.45 3.23 9.86 9.43 80 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82 Ix Intron 0 56.21 40.63 31.68 41.65 44.32 18.80 22.62 23.70 15.48 22.91 18.80 10.51 13.66 9.72 13.55 11.72 24.30 16.91 16.75 23.49 6.37 12.60 10.81 83 Ix_AR1 ActiveIntronRegion 0 56.77 41.05 32.01 42.07 44.76 19.00 22.86 23.94 15.63 23.15 19.00 10.62 13.80 9.82 13.69 11.84 24.55 17.08 16.92 23.74 6.44 12.73 10.92 84 ER8a ExonRegion 0 11.25 10.97 1.03 0.07 2.89 31.80 4.29 0.05 0.85 2.05 0.05 0.00 0.00 0.00 2.60 0.00 0.17 0.00 0.08 0.00 0.06 1.75 0.00 85 E8_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER8b ExonRegion 0 34.82 31.30 8.17 10.18 9.11 22.75 10.85 6.37 6.08 6.96 2.60 7.67 3.54 2.75 4.56 1.14 2.77 1.87 4.25 9.19 0.46 2.61 1.05 87 E8_Da KnownBoundary 0 8.89 70.71 10.08 17.98 10.95 13.51 11.84 2.14 6.71 9.19 8.84 43.66 0.00 12.18 9.52 6.66 8.13 5.76 4.80 13.68 2.41 2.27 0.00 88 E8_Db KnownBoundary 0 0.00 32.56 6.33 22.37 21.65 20.90 14.18 13.39 9.90 5.32 2.63 5.70 6.82 2.94 5.07 0.00 4.21 0.00 4.42 18.34 0.00 0.00 4.10 89 ER8c ExonRegion 0 15.34 73.72 17.16 44.63 50.17 28.88 23.83 18.15 18.53 21.79 13.53 32.47 10.55 11.77 9.43 2.97 13.20 5.54 6.37 34.57 4.41 5.73 3.67 90 ER8d ExonRegion 0 32.04 107.10 40.75 73.70 86.77 43.05 35.55 85.80 45.65 65.81 19.56 52.52 25.03 10.62 25.09 16.94 16.38 10.61 22.56 64.58 4.56 18.47 8.92 91 IG2 Intergenic 0 35.30 120.63 39.62 67.02 132.35 80.27 81.41 83.93 64.53 92.39 39.23 35.01 32.08 29.25 20.32 29.66 33.12 56.24 38.87 75.26 10.66 16.75 16.57 92 IG2_AR1 ActiveIntergenicRegion 0 42.65 138.17 45.05 76.98 145.83 88.79 89.13 96.89 71.43 102.18 42.77 36.33 33.84 29.04 22.87 31.91 33.25 57.86 41.24 81.76 10.38 18.51 17.46 93 IG2_SR1 SilentIntergenicRegion 0 0.00 4.36 5.60 7.01 0.00 1.57 3.59 6.91 14.47 3.60 3.87 0.00 3.35 3.71 3.32 16.13 2.83 25.87 18.66 14.89 6.61 0.00 0.00 94 IG2_AR2 ActiveIntergenicRegion 0 8.67 58.19 20.54 32.01 86.51 51.63 55.00 38.26 41.07 59.35 27.79 30.81 26.68 30.68 11.21 22.58 34.46 52.77 31.48 53.69 12.33 10.60 13.68 95 IG2_SR2 SilentIntergenicRegion 0 8.72 45.93 10.63 13.79 42.81 14.62 35.63 15.71 15.48 19.73 3.41 28.91 12.14 25.65 10.15 2.19 4.95 11.30 10.96 21.90 1.23 8.89 10.11