Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 VEGFA Gene 0 49.38 53.64 23.91 58.09 57.83 23.97 20.55 74.28 60.41 122.09 76.22 60.71 39.92 19.34 24.93 12.65 23.92 18.40 71.08 5.26 107.01 275.52 466.43 2 476772 Transcript 0 2.91 3.04 4.34 1.27 4.70 2.05 0.97 2.07 4.20 5.19 9.93 2.79 0.86 3.45 1.40 2.46 2.57 1.93 5.95 0.00 7.91 10.75 34.28 3 482630 Transcript 0 10.93 16.45 2.81 17.94 72.73 34.14 27.25 27.59 41.19 85.39 60.69 33.61 24.90 24.33 14.61 9.08 7.68 7.96 84.21 1.08 120.76 127.70 420.74 4 372077 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 324450 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 426830 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 7 372067 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 417285 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 4.01 9 457104 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 425836 Transcript 0 26.67 0.00 0.00 3.20 3.74 0.00 0.00 0.00 1.45 8.22 4.42 0.00 18.67 2.24 6.30 0.00 0.00 2.07 4.24 0.00 14.46 37.96 105.17 11 413642 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 372064 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 372055 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 230480 Transcript 0 0.00 0.00 1.50 1.67 0.62 6.80 0.31 0.02 1.24 0.00 14.25 5.00 3.75 4.21 0.95 1.38 0.09 0.00 3.71 0.49 1.55 2.95 0.73 15 480614 Transcript 0 7.00 3.96 5.50 7.59 3.82 2.85 1.56 9.62 10.63 17.99 20.99 10.12 6.22 5.10 4.47 3.16 5.85 5.17 11.49 1.60 27.56 46.39 85.29 16 497139 Transcript 1 38.97 32.71 13.48 31.22 119.75 40.51 33.34 70.41 77.04 171.52 93.68 21.70 16.68 24.08 17.89 13.64 22.28 16.89 113.86 5.32 190.54 251.22 708.25 17 493786 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 ER1a ExonRegion 0 2.12 3.05 0.00 0.84 7.00 4.09 0.46 1.06 2.38 1.37 10.48 0.00 0.00 4.75 1.79 4.92 2.92 2.42 3.68 0.00 12.80 10.66 57.04 19 E1_Ae KnownBoundary 0 10.08 9.60 0.00 3.00 32.34 17.66 3.67 10.76 7.87 8.25 36.22 0.00 0.00 16.72 9.27 16.06 8.79 19.48 31.72 0.00 56.96 56.15 264.11 20 ER1b ExonRegion 1 4.23 6.10 0.00 2.73 26.76 16.50 3.31 7.78 7.41 6.88 28.99 0.00 0.00 9.74 5.80 11.89 6.60 7.39 19.11 2.13 45.18 41.67 198.22 21 ER1c ExonRegion 1 4.23 8.13 1.23 2.73 30.77 27.51 3.97 8.64 7.41 8.03 31.89 0.00 0.00 13.81 5.80 11.89 9.90 7.39 25.48 2.13 48.48 58.34 286.32 22 ER1d ExonRegion 1 4.23 8.13 1.23 2.73 32.11 27.51 4.41 10.37 7.82 11.09 33.50 0.00 4.69 14.62 5.80 11.89 9.90 7.39 37.16 2.13 50.69 67.37 326.95 23 ER1e ExonRegion 1 24.17 61.87 29.90 55.70 80.98 75.24 36.98 124.23 89.03 247.33 142.06 80.34 29.14 40.35 28.98 26.07 51.33 37.76 303.74 8.35 232.80 504.22 2222.43 24 E1_Af KnownBoundary 1 81.79 47.49 37.70 53.61 69.44 31.00 26.81 139.61 94.21 228.60 108.61 36.46 53.73 31.73 76.40 8.03 77.42 24.58 144.00 9.40 262.24 260.73 914.58 25 ER1f ExonRegion 1 13.08 30.50 21.06 28.85 27.77 16.81 13.66 62.99 55.62 136.08 95.15 28.04 21.89 33.49 34.31 12.69 37.22 28.50 73.03 6.66 186.39 245.53 566.41 26 E1a_E3b KnownJunction 0 51.71 74.59 42.64 97.89 82.60 78.31 40.85 181.47 150.23 309.10 226.95 114.94 85.71 55.33 96.17 27.86 46.56 73.17 122.45 16.43 365.91 410.82 1218.47 27 ER2a ExonRegion 0 0.00 0.00 1.46 1.31 1.24 13.60 0.61 0.03 2.47 0.00 13.34 4.29 0.68 5.95 1.90 2.76 0.18 0.00 7.41 0.99 3.11 3.20 1.47 28 E2a_E3b KnownJunction 0 0.00 0.00 1.54 2.03 0.00 0.00 0.00 0.00 0.00 0.00 15.16 5.70 6.82 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 29 ER3a ExonRegion 0 0.68 1.35 0.68 1.33 0.99 1.34 1.01 1.96 2.52 3.34 8.94 1.69 0.91 3.02 3.07 2.35 2.48 1.15 3.84 1.11 3.93 4.42 4.50 30 E3_Ab KnownBoundary 0 0.00 3.29 0.00 1.56 0.00 0.00 0.00 0.00 1.56 1.42 11.69 0.00 0.00 2.47 8.90 0.00 0.00 1.78 9.60 2.62 3.15 5.51 12.72 31 ER3b ExonRegion 0 45.40 86.61 62.66 136.88 69.83 57.82 30.19 198.20 200.02 364.90 258.06 105.86 103.09 67.45 79.53 43.94 83.17 90.25 201.12 13.31 350.99 674.90 1536.90 32 E3_Da KnownBoundary 0 0.00 5.06 0.00 1.90 0.00 0.00 0.00 2.26 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 5.69 7.00 33 E3a_E3c KnownJunction 0 58.75 154.12 97.07 215.92 94.48 62.41 38.38 246.53 268.17 447.95 360.83 232.43 159.73 84.64 119.41 59.47 126.13 104.92 365.00 11.25 440.16 1105.39 2262.81 34 ER3c ExonRegion 0 1.13 1.85 1.69 1.13 0.87 0.63 0.43 1.33 3.22 2.88 4.85 3.18 0.45 1.30 1.14 0.27 1.03 1.15 6.94 0.15 5.00 6.24 4.96 35 E3_Ac KnownBoundary 0 6.96 0.00 3.49 2.06 0.00 0.00 0.00 4.81 7.55 1.48 4.69 6.00 0.00 0.00 0.00 0.00 0.00 0.00 7.53 0.00 6.30 3.12 3.33 36 ER3d ExonRegion 0 50.89 128.13 94.85 147.48 86.91 63.44 40.76 210.00 226.60 409.88 362.21 177.35 163.60 80.68 104.86 44.54 122.94 96.10 299.26 18.83 468.92 836.25 1764.55 37 E3_Db KnownBoundary 0 21.26 21.05 0.00 15.02 117.66 71.72 40.89 36.31 52.81 101.32 79.81 101.88 75.00 35.32 48.83 11.62 11.78 12.97 142.40 0.00 168.28 189.03 729.26 38 E3b_E3f KnownJunction 0 83.50 189.83 118.71 149.10 68.42 73.59 37.19 184.26 199.68 295.78 328.19 183.06 198.53 57.68 93.08 75.19 106.40 78.64 279.73 21.22 324.02 936.14 1657.15 39 ER3e ExonRegion 0 10.93 16.45 2.81 17.94 72.73 34.14 27.25 27.59 41.19 85.39 60.69 33.61 24.90 24.33 14.61 9.08 7.68 7.96 84.21 1.08 120.76 127.70 420.74 40 E3_Ad KnownBoundary 0 10.30 16.64 2.90 23.34 78.69 21.64 35.73 25.79 40.88 80.77 60.59 5.85 0.00 3.00 4.45 18.37 3.55 4.15 89.41 7.29 114.16 131.90 419.73 41 ER3f ExonRegion 1 47.17 35.58 13.07 35.27 176.55 59.75 49.15 70.72 87.87 158.62 91.86 13.77 6.79 16.19 20.64 20.30 16.76 13.32 131.18 6.67 177.01 226.89 796.25 42 E3_Dc KnownBoundary 0 40.82 35.13 2.90 25.94 55.18 24.13 18.99 25.26 54.72 91.41 81.92 18.61 29.71 12.36 13.35 12.48 17.67 11.40 43.67 0.00 93.65 125.96 420.75 43 ER3g ExonRegion 1 38.97 32.71 13.48 31.22 119.75 40.51 33.34 70.41 77.04 171.52 93.68 21.70 16.68 24.08 17.89 13.64 22.28 16.89 113.86 5.32 190.54 251.22 708.25 44 E3_Ae KnownBoundary 1 156.10 72.88 10.32 84.87 158.15 49.80 51.94 109.01 117.19 251.56 156.14 35.86 26.46 24.43 33.13 15.30 24.68 23.63 126.87 2.49 242.66 367.83 659.77 45 ER3h ExonRegion 0 104.05 74.78 17.12 56.94 112.15 43.38 41.18 119.65 115.28 236.28 122.02 45.97 36.62 25.51 41.62 24.16 35.03 26.45 134.87 6.07 269.13 392.30 840.04 46 E3_Af KnownBoundary 0 190.40 130.57 26.17 135.01 218.93 78.76 65.85 216.42 142.97 342.06 161.30 125.74 91.55 17.48 48.95 29.65 57.41 46.97 138.17 6.26 307.90 357.79 1107.16 47 ER3i ExonRegion 0 286.87 279.19 160.30 296.62 351.09 173.15 148.42 416.76 358.78 651.09 498.38 340.09 301.70 116.51 177.55 98.78 175.86 137.58 502.16 39.14 632.61 1377.64 2666.28 48 E3_Dd KnownBoundary 0 0.00 6.31 7.89 1.73 0.00 0.00 0.00 5.91 4.22 12.09 11.27 0.00 0.00 0.00 4.45 0.00 0.00 2.32 4.80 0.00 2.35 14.21 4.35 49 E3d_E4a KnownJunction 0 259.38 299.16 152.95 277.45 384.89 199.66 160.97 319.35 310.12 517.82 463.75 403.93 307.93 117.37 109.15 91.00 140.63 114.83 404.81 35.60 510.10 1041.46 1975.22 50 ER3j ExonRegion 0 3.71 3.03 8.67 1.69 2.39 0.00 1.48 3.07 6.03 9.02 9.37 5.58 1.73 2.15 1.02 0.00 2.22 1.44 8.21 0.00 3.03 10.84 11.53 51 E4a_E4b KnownJunction 0 93.65 9.01 11.71 16.38 18.93 0.00 4.15 19.63 17.77 27.94 21.22 32.41 33.93 6.53 15.70 7.69 4.77 6.96 8.75 0.00 34.16 136.92 306.37 52 E4a_E4c KnownJunction 0 170.03 172.67 37.14 149.46 173.68 83.76 63.42 262.79 207.29 384.37 168.78 149.45 136.68 28.49 36.96 10.60 49.09 60.40 180.99 24.61 190.21 426.74 848.59 53 E4a_E4d KnownJunction 0 20.60 69.46 35.24 27.84 64.35 19.48 47.56 26.74 44.07 75.80 189.78 132.34 181.64 45.97 67.00 16.06 54.42 6.26 62.12 3.07 326.25 432.06 678.38 54 ER4a ExonRegion 0 238.53 262.94 139.16 282.07 291.21 161.56 131.73 386.83 365.76 639.13 517.69 335.53 318.92 105.30 114.50 63.50 140.73 128.42 345.51 33.76 623.58 1143.57 2206.20 55 ER4b ExonRegion 0 23.97 9.48 10.34 18.40 10.90 6.94 3.90 27.47 27.04 57.55 55.16 32.97 22.22 14.54 11.39 8.37 16.69 13.48 26.34 3.71 84.90 161.43 329.58 56 E4_Ab KnownBoundary 0 156.84 17.50 7.92 18.15 34.89 16.58 8.39 12.90 11.57 40.83 42.54 25.21 26.62 24.07 4.45 4.36 4.77 1.99 0.00 2.88 75.80 110.71 310.47 57 ER4c ExonRegion 1 317.56 22.22 18.17 29.39 66.24 12.49 14.99 36.10 31.60 92.06 84.76 103.01 108.67 28.68 22.01 8.86 23.73 11.78 33.84 6.70 179.75 325.15 784.42 58 E4_Db KnownBoundary 0 160.77 9.41 10.11 16.85 33.62 5.05 7.68 21.65 19.07 64.82 46.59 60.77 53.41 7.42 4.57 3.16 11.03 6.09 35.77 2.49 75.18 197.36 323.44 59 E4b_E4c KnownJunction 0 26.67 0.00 0.00 3.20 3.74 0.00 0.00 0.00 1.45 8.22 4.42 0.00 18.67 2.24 6.30 0.00 0.00 2.07 4.24 0.00 14.46 37.96 105.17 60 E4_Dc KnownBoundary 0 0.00 3.16 6.80 9.46 0.00 0.00 0.00 3.61 8.28 4.46 2.53 13.20 8.12 2.47 0.00 4.10 4.77 4.19 3.58 0.00 15.01 14.45 24.24 61 E4c_E4c KnownJunction 1 77.57 16.97 10.76 19.98 27.16 12.95 10.38 24.44 20.86 65.81 28.17 30.46 68.02 7.42 5.19 3.85 22.72 12.77 8.66 6.52 73.27 149.04 267.95 62 E4c_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 63 ER4d ExonRegion 1 120.76 14.80 16.20 29.45 33.00 10.80 10.52 30.92 29.92 79.01 47.89 49.07 78.95 8.75 6.93 6.11 25.49 15.40 27.25 5.20 104.31 213.56 362.68 64 ER4e ExonRegion 0 0.17 2.55 3.46 9.89 2.10 0.04 1.61 5.42 7.77 6.61 12.17 10.02 9.93 2.17 3.64 3.15 7.05 5.47 5.25 1.21 22.81 18.14 49.00 65 E4_Dd KnownBoundary 0 0.00 0.00 0.00 9.82 3.65 0.00 4.42 1.85 1.42 1.24 16.85 6.00 0.00 5.30 8.90 8.46 8.42 4.35 4.05 3.26 25.76 25.47 57.28 66 E4d_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER4f ExonRegion 0 3.35 1.77 5.78 6.67 1.94 2.32 1.04 7.93 8.91 13.15 18.20 5.79 3.56 3.13 3.70 2.37 3.96 6.12 7.88 2.15 25.58 28.46 42.32 68 E4_Ac KnownBoundary 0 10.22 5.26 7.57 10.59 19.19 8.06 0.00 4.11 12.93 17.51 20.58 0.00 12.99 2.30 0.00 4.36 8.13 0.00 17.41 2.49 8.34 36.31 46.61 69 ER4g ExonRegion 0 247.04 228.84 87.83 292.27 155.44 104.89 70.82 400.86 307.47 624.00 276.93 283.13 193.61 63.70 93.47 46.50 66.16 92.81 315.09 30.34 348.83 801.55 1544.34 70 E4_De KnownBoundary 1 260.42 351.85 103.40 323.27 189.90 89.15 115.93 408.36 321.81 616.72 256.59 368.67 227.91 76.64 73.55 15.47 76.11 93.10 252.62 29.72 390.87 672.89 1301.45 71 E4e_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 4.01 72 ER4h ExonRegion 1 134.01 285.17 88.30 248.94 138.07 92.53 103.19 315.76 299.11 537.83 243.71 442.97 226.19 65.52 87.04 20.21 81.96 80.40 220.79 30.09 371.67 650.47 1220.64 73 E4_Df KnownBoundary 0 0.00 0.00 11.80 0.00 0.00 4.71 4.46 0.00 6.68 5.40 25.06 11.85 0.00 4.94 0.00 0.00 4.77 0.00 17.41 3.26 22.49 12.06 44.30 74 E4f_E4d KnownJunction 1 111.80 317.90 67.95 222.55 124.45 117.94 128.78 247.68 275.29 498.42 215.53 445.05 189.60 35.91 99.39 27.34 79.01 77.60 217.51 39.88 314.94 660.95 1217.45 75 E4f_E4e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER4i ExonRegion 0 5.90 5.38 9.00 10.43 4.39 3.02 1.44 9.40 11.47 13.05 17.83 6.96 3.94 3.54 3.03 2.42 5.09 3.94 12.45 0.88 18.38 31.40 45.11 77 E4_Ad KnownBoundary 0 2.74 2.83 11.29 6.89 7.64 18.23 5.74 2.01 6.22 9.89 6.37 0.00 0.00 2.65 8.90 0.00 3.74 0.00 8.28 0.00 14.09 18.06 50.71 78 ER4j ExonRegion 0 101.43 210.44 124.30 246.85 271.99 126.67 109.39 360.36 323.77 624.00 348.45 492.77 292.84 103.08 133.63 59.40 127.63 79.90 260.04 33.98 507.99 1070.14 1754.73 79 E4_Ae KnownBoundary 0 151.06 185.69 149.88 304.82 542.02 177.00 148.83 523.08 402.14 743.00 437.58 403.18 353.87 152.69 132.02 89.72 160.73 96.42 342.97 31.70 578.98 1185.42 2090.80 80 ER4k ExonRegion 0 262.56 294.44 104.46 308.76 296.30 98.17 99.13 351.59 252.96 516.92 271.00 290.89 188.81 67.93 108.89 48.94 86.25 61.25 242.70 19.22 343.94 1301.53 1565.74 81 E4_Dg KnownBoundary 1 19.41 56.11 30.31 84.47 92.78 11.92 12.50 91.10 58.68 129.61 13.21 117.34 120.77 6.83 6.30 0.00 3.55 2.57 0.00 2.94 2.59 244.63 69.14 82 ER4l ExonRegion 1 12.38 44.23 11.82 34.55 79.47 10.68 7.41 34.83 25.01 53.42 12.81 191.90 97.44 5.89 10.44 0.00 0.00 1.85 0.00 0.80 2.42 138.14 46.84 83 ER4m ExonRegion 1 5.08 12.20 1.72 11.18 24.08 2.20 0.00 5.53 7.90 15.60 4.25 32.04 17.82 2.92 4.06 0.00 0.00 1.11 0.00 0.00 0.00 30.42 7.64 84 ER4n ExonRegion 0 2.12 2.71 0.00 4.09 2.68 0.00 0.00 0.00 1.24 4.59 1.29 4.33 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 2.78 4.89