Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA0240 Gene 0 56.62 74.77 26.41 38.50 101.64 108.38 45.54 58.23 83.98 58.74 74.04 98.31 113.92 86.70 42.17 61.16 76.48 86.90 49.21 75.29 47.40 54.05 41.23 2 314073 Transcript 0 0.00 0.00 0.00 0.68 0.00 1.83 0.00 0.00 0.15 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 394167 Transcript 0 0.00 0.00 0.00 0.11 0.00 1.22 0.00 0.00 0.00 0.00 0.16 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 394168 Transcript 0 7.35 11.34 3.27 6.55 12.01 6.68 6.04 6.33 5.30 8.22 3.56 10.12 7.74 3.08 7.71 2.84 4.19 0.85 1.95 4.30 1.12 7.36 0.78 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 4.33 0.06 0.00 1.22 0.00 0.00 0.00 0.14 0.00 1.58 0.00 1.20 0.14 2.61 7.74 1.70 0.00 4.54 6 E1_Da NovelBoundary 0 13.93 3.16 8.66 3.83 12.31 5.45 8.17 7.80 4.34 6.63 14.00 0.00 0.00 2.47 4.45 15.72 8.88 25.08 4.14 16.62 3.15 0.00 4.18 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.10 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 8 I1 Intron 0 14.87 12.43 5.29 11.51 21.65 8.80 10.29 7.84 8.50 7.22 2.30 7.12 11.34 2.79 6.24 7.24 5.41 9.74 7.46 16.10 4.08 1.06 5.08 9 I1_SR1 SilentIntronRegion 0 20.33 24.09 8.27 18.35 23.31 10.74 15.23 18.22 19.60 13.81 3.20 8.73 14.75 5.93 8.66 11.69 7.99 15.96 12.52 23.09 7.53 1.88 6.95 10 I1_AR2 ActiveIntronRegion 0 23.09 20.51 8.67 20.37 29.81 10.41 14.07 14.95 18.05 12.09 2.65 6.74 18.12 6.64 9.80 14.42 10.92 20.92 12.49 31.23 10.38 2.89 8.35 11 I1_SR2 SilentIntronRegion 0 20.64 14.97 6.39 13.34 24.90 7.81 10.56 11.93 11.60 11.58 1.85 5.53 8.10 2.54 10.04 10.85 8.18 13.00 10.68 18.05 5.32 0.80 6.12 12 I1_SR3 SilentIntronRegion 0 15.18 9.36 4.97 11.80 26.21 8.94 10.25 6.75 6.19 5.41 2.20 3.36 11.91 2.91 4.73 6.17 3.51 6.05 6.30 11.68 1.63 0.77 4.58 13 I1_AR4 ActiveIntronRegion 0 10.25 18.05 3.83 7.21 14.25 8.00 10.04 5.82 4.75 3.87 1.25 2.22 11.22 3.82 3.42 1.92 1.60 7.86 5.14 8.93 1.78 0.67 3.79 14 I1_SR4 SilentIntronRegion 0 12.38 10.49 4.49 9.60 19.90 8.82 9.66 5.05 6.01 5.34 2.26 8.92 11.48 2.11 5.06 5.66 4.24 8.03 5.75 15.52 3.43 1.04 4.41 15 E2_Aa NovelBoundary 0 0.00 0.00 9.40 1.63 19.61 2.50 0.00 1.73 6.19 0.00 4.95 10.95 6.82 0.00 0.00 24.69 0.00 5.68 4.14 0.00 0.00 3.12 4.35 16 ER2a ExonRegion 0 0.00 0.00 0.00 1.09 20.87 6.23 3.93 0.00 1.25 0.00 3.30 8.56 6.51 3.27 5.43 3.57 5.01 1.54 3.71 5.48 3.97 1.25 1.76 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E2b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2b ExonRegion 0 0.00 0.00 0.00 1.36 0.00 3.67 0.00 0.00 0.31 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 0.00 0.00 0.00 0.23 0.00 2.45 0.00 0.00 0.00 0.00 0.32 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3b ExonRegion 0 8.71 10.61 1.70 0.97 19.43 18.10 6.79 1.55 4.98 1.41 18.57 8.09 8.77 31.12 5.76 15.85 10.29 16.34 10.02 21.06 6.87 5.34 5.36 22 E3_Da NovelBoundary 0 3.78 0.00 4.82 0.00 4.33 2.73 6.09 12.16 7.58 6.39 0.00 0.00 6.17 0.00 0.00 8.03 39.46 4.10 35.01 17.26 0.00 0.00 7.34 23 E3a_E4a KnownJunction 0 21.26 12.63 4.76 3.30 61.12 39.81 28.18 4.03 12.36 2.63 29.90 0.00 0.00 38.91 4.45 16.58 8.98 33.33 17.88 48.07 5.99 11.57 10.24 24 E3a_E6a NovelJunction 0 16.89 0.00 9.55 1.76 34.38 33.90 31.53 21.40 20.11 10.58 25.11 0.00 20.45 9.48 0.00 27.86 25.71 35.86 31.81 46.53 5.93 9.06 27.32 25 I3 Intron 0 28.83 25.70 13.03 17.52 49.49 15.85 31.80 19.96 15.62 15.85 7.04 27.29 15.17 18.19 17.14 14.49 12.84 15.86 14.01 27.35 3.59 3.46 8.58 26 I3_SR2 SilentIntronRegion 0 8.60 6.10 1.38 7.86 1.84 3.82 3.14 8.79 4.73 12.52 7.01 9.56 0.68 10.83 14.63 24.27 9.83 20.44 8.43 21.28 2.48 5.12 7.40 27 I3_AR2 ActiveIntronRegion 0 14.34 21.91 10.00 10.98 27.37 12.57 27.45 16.39 14.33 13.97 7.00 26.83 6.92 20.85 15.67 18.90 15.61 19.24 11.71 27.34 6.27 4.09 7.65 28 I3_SR3 SilentIntronRegion 0 57.58 45.90 22.58 32.50 89.06 26.86 56.15 33.78 26.54 25.87 10.13 46.04 29.58 26.34 28.95 18.08 17.53 18.84 20.92 42.65 2.62 4.46 11.14 29 Ix Intron 1 82.51 82.71 36.30 34.92 134.89 24.40 52.87 43.29 26.56 27.51 8.82 29.40 22.80 15.51 33.43 14.09 16.97 16.72 11.96 32.92 0.87 2.88 5.80 30 Ix_SR1 SilentIntronRegion 0 83.69 84.02 36.87 35.46 136.95 24.79 53.68 43.97 26.97 27.95 8.96 29.83 23.15 15.74 33.92 14.31 17.19 16.98 12.15 33.41 0.88 2.93 5.87 31 I3 Intron 0 19.04 12.37 5.84 10.71 28.15 9.48 13.85 10.64 10.14 6.74 1.45 6.78 10.50 1.93 8.85 8.29 6.67 8.51 6.85 13.45 2.76 1.07 4.61 32 I3_SR1 SilentIntronRegion 0 19.05 12.38 5.85 10.72 28.17 9.49 13.86 10.64 10.15 6.74 1.45 6.79 10.50 1.94 8.86 8.30 6.68 8.52 6.85 13.46 2.77 1.07 4.61 33 E4_Aa NovelBoundary 1 79.94 38.48 3.43 26.50 82.77 5.74 37.14 5.91 23.41 19.96 0.00 18.46 55.19 2.12 30.29 4.36 30.11 4.89 22.40 24.22 0.00 2.57 4.35 34 ER4a ExonRegion 0 43.61 22.14 3.82 13.83 43.51 19.90 22.18 27.24 22.44 15.22 24.22 47.53 37.08 39.44 14.05 23.34 28.16 26.64 12.81 45.88 10.65 11.65 10.92 35 E4_Da NovelBoundary 0 36.30 34.34 2.90 8.69 31.24 4.77 25.04 4.07 13.45 12.89 2.26 19.36 27.27 10.30 8.90 0.00 9.07 6.84 13.18 14.45 0.00 2.69 4.35 36 E4a_E6a KnownJunction 0 3.78 3.22 0.00 2.06 27.50 11.24 9.98 6.90 18.61 8.86 29.11 30.01 33.93 30.14 0.00 19.74 39.64 13.31 3.76 23.91 2.66 14.02 15.19 37 ER5a ExonRegion 0 2.05 1.97 0.00 3.93 2.59 2.37 3.42 1.66 2.38 2.76 0.00 3.70 2.76 1.23 4.63 3.84 6.39 1.79 1.03 6.17 2.85 1.35 0.95 38 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6a ExonRegion 0 3.17 7.82 8.31 10.10 19.43 17.62 7.74 11.23 32.01 11.12 38.70 37.84 46.08 40.21 22.20 24.81 42.34 35.99 25.48 55.69 12.31 21.51 28.79 40 E6a_E7a KnownJunction 0 6.96 15.26 13.57 18.68 27.25 31.69 4.33 18.61 36.81 11.82 35.17 66.92 40.26 65.34 24.85 31.70 64.61 37.27 69.18 57.21 19.58 27.37 47.55 41 E7_Aa NovelBoundary 0 25.56 5.26 1.09 4.59 30.05 8.86 23.54 4.19 3.01 3.71 0.00 6.30 6.33 2.47 0.00 7.43 4.58 2.40 11.95 2.49 0.00 0.00 0.00 42 ER7a ExonRegion 1 16.67 12.49 10.63 17.94 28.07 23.99 7.57 21.87 52.98 20.08 65.09 83.41 46.80 74.54 14.62 41.85 58.27 74.29 50.97 55.28 30.45 22.75 41.05 43 E7_Da NovelBoundary 0 17.93 0.00 3.58 3.53 40.41 10.33 22.04 0.00 0.00 5.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 44 E7a_E8a KnownJunction 0 23.41 18.62 7.21 17.41 32.94 18.97 14.71 32.69 66.72 33.04 94.81 96.93 56.17 71.46 14.96 49.13 55.26 84.61 43.01 70.18 38.43 19.41 35.17 45 ER8a ExonRegion 1 28.77 25.55 10.37 15.21 37.23 46.24 20.47 40.46 74.18 38.31 87.85 115.89 90.27 84.90 12.78 45.49 80.27 80.55 37.72 78.38 34.24 29.02 36.30 46 E8a_E9a KnownJunction 1 33.41 30.39 18.92 16.31 33.11 42.02 33.12 36.19 66.69 33.15 59.07 125.44 45.94 99.01 4.45 51.70 88.92 73.33 50.07 87.31 40.77 31.66 47.63 47 E9_Aa NovelBoundary 0 30.23 5.72 3.13 5.63 8.32 5.22 2.21 2.14 3.36 0.00 0.00 6.90 0.00 2.24 0.00 7.60 8.23 1.95 9.60 2.88 0.00 0.00 4.27 48 ER9a ExonRegion 0 42.39 42.13 24.25 30.19 62.48 88.98 38.77 56.91 99.30 56.68 93.03 130.34 147.65 111.14 39.95 89.44 112.83 150.83 58.18 108.05 73.54 56.85 66.10 49 E9a_E10a KnownJunction 0 34.60 54.86 27.20 40.62 130.73 154.97 59.09 59.11 108.30 74.14 183.41 158.75 133.60 146.98 37.95 171.92 152.31 232.80 198.22 103.23 147.09 129.94 124.89 50 I9 Intron 0 12.02 7.20 2.91 5.66 11.40 5.14 7.00 4.67 5.03 3.18 0.99 3.04 6.95 0.62 3.51 4.66 2.66 4.86 3.63 7.85 1.53 0.49 3.52 51 I9_SR1 SilentIntronRegion 0 12.05 7.21 2.93 5.67 11.47 5.16 7.03 4.70 5.07 3.19 0.99 3.01 6.98 0.61 3.49 4.66 2.68 4.90 3.65 7.82 1.54 0.49 3.55 52 E10_Aa NovelBoundary 0 77.27 9.47 11.24 13.12 31.75 22.20 8.35 11.17 8.33 6.07 2.68 6.30 15.26 0.00 0.00 25.04 14.31 12.15 12.05 21.80 2.84 0.00 4.27 53 ER10a ExonRegion 0 27.37 43.70 27.54 25.73 53.01 107.19 28.23 36.25 83.55 58.18 87.38 95.98 129.73 101.25 27.53 77.64 101.61 166.59 70.11 90.57 86.67 61.25 48.45 54 E10_Da NovelBoundary 0 23.19 5.92 12.36 18.91 23.77 18.85 11.31 2.51 9.43 13.38 4.47 0.00 6.82 0.00 8.90 3.67 3.46 26.90 12.61 3.07 0.00 0.00 0.00 55 E10a_E11a KnownJunction 0 6.59 51.04 19.43 20.51 40.15 96.88 17.14 37.42 70.28 45.15 67.44 64.97 80.84 80.94 46.60 63.57 68.07 133.94 23.25 89.74 53.13 30.80 34.40 56 I10 Intron 0 15.99 12.51 3.91 7.87 17.71 7.60 7.96 9.30 6.15 5.71 2.07 4.68 19.62 2.25 5.85 7.14 5.52 7.55 9.15 10.10 1.91 0.70 2.55 57 I10_AR1 ActiveIntronRegion 0 14.39 15.56 3.62 7.48 18.95 6.75 5.63 9.49 4.69 5.81 3.28 5.27 17.74 4.11 8.03 8.42 7.48 17.17 22.55 9.63 4.37 0.59 1.66 58 I10_SR1 SilentIntronRegion 0 16.54 11.60 4.01 8.02 17.38 7.89 8.72 9.27 6.62 5.70 1.70 4.52 20.27 1.68 5.20 6.77 4.93 4.60 5.03 10.27 1.16 0.73 2.84 59 E11_Aa NovelBoundary 0 10.89 15.26 11.29 25.60 6.79 8.57 12.59 10.56 9.23 10.48 2.68 0.00 26.78 4.24 14.09 29.22 4.77 9.91 3.58 15.28 3.15 0.00 8.19 60 ER11a ExonRegion 0 22.57 56.72 23.60 27.89 60.75 110.30 32.93 46.60 78.29 50.09 87.80 99.92 112.10 102.53 44.15 64.92 91.77 123.36 38.38 84.18 78.48 48.70 50.68 61 E11a_E12a KnownJunction 0 6.74 18.94 30.69 29.13 34.55 120.95 51.49 43.05 73.73 41.34 55.75 71.12 152.10 83.82 46.60 55.11 61.71 101.10 42.45 72.03 50.41 38.15 31.16 62 ER12a ExonRegion 0 11.74 49.69 22.39 31.92 55.07 91.93 35.23 44.61 71.62 51.26 76.35 94.06 125.42 115.91 29.53 63.95 80.98 132.89 62.37 76.94 50.12 53.13 36.14 63 E12a_E13a KnownJunction 0 9.93 67.16 19.34 33.26 65.11 103.18 36.61 49.86 86.72 67.93 112.98 87.48 171.74 115.66 47.84 77.33 120.71 146.58 69.08 86.16 80.13 57.25 58.90 64 I12 Intron 0 11.39 9.88 1.90 8.10 20.42 6.36 8.50 6.48 4.63 6.52 2.18 3.71 9.62 1.84 7.06 5.41 4.58 9.08 8.01 8.12 1.34 0.90 2.04 65 I12_SR1 SilentIntronRegion 0 11.42 9.91 1.91 8.13 20.49 6.38 8.53 6.50 4.65 6.54 2.19 3.72 9.65 1.85 7.08 5.43 4.60 9.11 8.04 8.15 1.34 0.91 2.04 66 E13_Aa NovelBoundary 1 45.79 11.91 4.35 6.09 20.71 10.45 12.06 26.78 17.68 8.11 2.53 6.30 13.15 2.47 34.12 16.49 0.00 23.96 9.32 12.66 14.76 5.51 11.18 67 ER13a ExonRegion 0 26.12 37.02 19.92 32.58 55.93 86.10 33.82 58.48 81.29 67.58 94.35 80.75 73.69 110.78 37.93 68.20 109.45 137.64 53.58 86.36 65.21 42.24 34.78 68 E13_Da NovelBoundary 0 29.04 3.35 2.99 11.15 15.79 12.44 12.28 16.92 13.77 15.93 2.37 6.30 0.00 0.00 12.11 15.98 8.88 25.12 9.51 3.26 12.17 0.00 8.19 69 E13a_E14a KnownJunction 0 16.60 45.78 29.15 40.39 61.46 111.30 26.10 73.73 110.76 79.03 96.34 55.37 69.48 135.91 29.30 61.27 134.92 127.80 65.79 79.70 85.25 49.78 26.72 70 ER14a ExonRegion 0 23.93 56.64 20.48 32.09 75.20 120.39 38.87 51.53 94.22 54.81 94.94 79.62 53.52 124.24 32.28 69.83 113.79 129.38 67.76 73.59 79.77 43.16 49.98 71 E14a_E15a KnownJunction 0 23.49 57.42 9.34 24.67 84.55 104.94 35.42 23.74 76.21 49.37 62.23 98.28 34.25 100.54 35.23 52.21 92.01 129.46 27.11 61.30 58.94 43.97 49.08 72 ER15a ExonRegion 0 18.70 43.26 16.36 27.32 56.81 112.34 29.64 33.26 98.83 62.67 75.59 61.83 66.66 112.63 30.45 64.90 104.28 142.13 48.49 86.84 61.64 41.77 44.36 73 E15a_E16a KnownJunction 1 3.70 27.76 7.86 19.64 65.11 116.13 28.18 44.77 92.77 52.09 64.02 73.37 53.08 123.37 24.60 39.14 97.43 97.17 69.65 88.08 63.63 51.37 35.17 74 ER16a ExonRegion 0 77.92 107.39 32.94 50.21 143.58 138.18 58.45 70.81 91.36 69.91 75.04 101.02 122.31 85.58 51.35 57.53 68.27 64.48 52.19 70.33 40.23 63.13 36.44 75 E16_Da KnownBoundary 0 32.01 22.63 21.52 31.83 40.07 38.44 10.07 47.89 30.96 40.19 23.06 17.26 26.30 19.07 24.60 14.27 12.90 0.00 12.52 14.76 2.84 57.19 7.68 76 ER16b ExonRegion 0 20.01 32.04 9.82 15.71 33.43 17.66 14.70 17.32 13.51 21.90 10.69 26.65 20.46 8.00 18.51 4.69 6.19 0.76 4.82 6.72 0.52 20.72 1.38