Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TFAP2B Gene 0 5.69 34.16 5.00 317.23 217.78 1068.86 234.12 165.01 248.50 574.50 0.00 0.00 0.00 0.39 0.21 0.00 0.14 545.95 385.57 291.86 0.00 2.04 1.02 2 344788 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 393655 Transcript 0 3.78 2.70 0.00 68.72 15.28 306.58 54.59 38.16 79.57 131.57 0.00 0.00 0.00 0.00 4.82 0.00 0.00 595.85 693.10 119.97 0.00 2.76 0.00 4 263046 Transcript 0 5.98 32.41 5.00 309.94 248.99 1146.02 241.98 190.73 279.31 651.42 0.00 0.00 0.00 0.09 0.00 0.00 0.00 524.36 350.21 292.17 0.00 1.84 0.81 5 489228 Transcript 0 0.93 9.48 1.49 57.40 73.25 441.28 87.31 39.42 59.18 150.68 0.00 0.00 0.00 0.17 1.19 0.00 0.00 132.41 193.51 103.35 0.00 0.61 0.44 6 IG18_AR2 ActiveIntergenicRegion 0 1.86 0.00 0.00 3.35 2.53 18.82 6.29 0.00 4.01 7.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 5.70 3.84 0.00 0.00 0.00 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 1.24 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 2.46 4.54 0.38 51.69 35.93 749.43 105.72 22.39 44.10 93.44 0.00 0.00 0.00 0.24 0.09 0.00 0.00 492.00 527.22 138.43 0.00 0.58 2.90 9 E1_Da NovelBoundary 0 0.00 0.00 0.00 47.65 37.78 236.91 117.30 41.32 35.36 71.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 127.14 49.51 63.66 0.00 0.00 0.00 10 E1a_E3a KnownJunction 0 3.78 2.70 0.00 68.72 15.28 306.58 54.59 38.16 79.57 131.57 0.00 0.00 0.00 0.00 4.82 0.00 0.00 595.85 693.10 119.97 0.00 2.76 0.00 11 I1 Intron 0 0.36 3.74 0.46 49.71 30.63 189.26 39.48 27.52 41.83 74.46 0.00 0.00 0.00 0.18 0.09 0.00 0.28 126.04 83.82 89.78 0.00 0.40 0.19 12 I1_SR1 SilentIntronRegion 0 0.24 2.79 0.42 42.97 25.75 157.75 34.06 20.78 37.46 63.13 0.00 0.00 0.00 0.16 0.11 0.00 0.26 101.29 67.60 80.77 0.00 0.38 0.23 13 I1_AR1 ActiveIntronRegion 0 1.21 12.19 1.27 99.27 81.72 376.78 85.70 81.05 102.18 179.17 0.00 0.00 0.00 0.81 0.00 0.00 0.00 296.53 203.27 180.57 0.00 0.68 0.00 14 I1_SR2 SilentIntronRegion 0 0.67 5.46 0.35 67.59 35.69 295.05 50.54 43.21 38.94 93.41 0.00 0.00 0.00 0.00 0.00 0.00 0.55 197.11 126.38 101.15 0.00 0.35 0.00 15 E2_Aa NovelBoundary 0 0.00 9.34 2.96 39.32 38.12 330.95 157.31 30.56 66.81 115.18 0.00 0.00 0.00 0.00 0.00 0.00 3.83 99.61 273.33 156.92 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.93 9.48 1.49 57.40 73.25 441.28 87.31 39.42 59.18 150.68 0.00 0.00 0.00 0.17 1.19 0.00 0.00 132.41 193.51 103.35 0.00 0.61 0.44 17 E2_Da NovelBoundary 0 0.00 5.66 1.83 108.68 26.23 294.72 91.33 52.45 73.29 139.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 181.07 199.35 121.57 0.00 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 3.35 1.74 51.51 30.39 157.98 54.76 60.71 77.43 131.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 200.72 216.10 69.99 0.00 0.00 0.00 19 ER2b ExonRegion 0 0.00 6.49 2.45 40.47 27.89 234.73 72.16 57.70 65.22 154.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 247.81 219.67 123.89 0.00 0.00 1.13 20 I2 Intron 0 1.42 5.65 1.14 82.87 50.10 314.59 75.83 51.93 64.96 150.10 0.00 0.00 0.00 0.13 0.00 0.00 0.16 188.65 128.60 115.13 0.00 0.90 0.00 21 I2_SR1 SilentIntronRegion 0 1.42 5.66 1.14 83.02 50.19 315.18 75.97 52.03 65.08 150.39 0.00 0.00 0.00 0.13 0.00 0.00 0.16 189.00 128.84 115.35 0.00 0.90 0.00 22 ER3a ExonRegion 0 2.02 11.07 1.61 109.15 75.25 645.59 116.36 62.45 115.57 281.07 0.00 0.00 0.00 0.81 0.27 0.00 0.10 465.17 401.90 232.86 0.00 1.11 1.79 23 E3a_E4a KnownJunction 0 6.59 15.19 1.45 194.75 76.66 779.38 140.92 111.31 262.03 467.69 0.00 0.00 0.00 0.00 0.00 0.00 4.21 1006.74 390.22 405.30 0.00 2.45 4.35 24 ER4a ExonRegion 0 2.71 10.90 5.26 259.15 120.67 807.23 174.78 135.19 304.65 557.58 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1224.82 655.77 434.98 0.00 1.54 3.61 25 E4a_E5a KnownJunction 0 6.67 31.57 11.18 329.83 176.91 956.84 260.91 163.27 328.27 589.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1183.25 819.88 484.24 0.00 0.00 0.00 26 I4_AR2 ActiveIntronRegion 0 0.56 2.02 0.60 73.53 12.72 56.89 35.73 10.70 13.84 22.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.78 25.68 41.34 0.00 0.33 0.00 27 I4_SR2 SilentIntronRegion 0 0.91 2.30 0.26 72.55 12.54 61.30 36.84 10.51 17.74 28.52 0.00 0.31 0.00 0.00 0.00 0.00 0.00 80.05 35.35 37.01 0.00 0.36 0.18 28 I4_AR3 ActiveIntronRegion 0 0.00 1.40 0.91 66.19 10.36 87.14 47.61 9.29 14.68 33.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 126.06 41.91 43.64 0.00 0.00 0.86 29 E5_Aa NovelBoundary 0 0.00 8.75 0.00 173.20 23.94 87.56 53.97 17.54 24.45 53.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 237.11 73.51 49.28 0.00 0.00 0.00 30 ER5a ExonRegion 0 4.44 26.95 9.47 457.34 151.30 1014.47 260.24 176.47 317.42 626.03 0.00 0.00 0.00 1.73 0.00 0.00 2.30 974.00 530.02 450.52 0.00 2.41 1.41 31 E5a_E6a KnownJunction 0 3.33 33.09 11.35 560.87 264.26 1664.95 346.06 152.30 309.14 640.95 0.00 0.00 0.00 2.47 0.00 0.00 0.00 961.47 580.53 453.81 0.00 0.00 0.00 32 I5 Intron 0 1.01 3.11 0.06 102.29 20.19 79.92 38.44 16.89 27.72 57.46 0.00 0.00 0.00 0.00 0.00 0.00 0.11 107.77 51.82 51.68 0.00 0.33 0.19 33 I5_AR1 ActiveIntronRegion 0 0.94 0.76 0.00 59.01 7.89 64.84 13.41 6.78 13.44 29.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 126.96 33.65 33.19 0.00 0.00 0.00 34 I5_SR1 SilentIntronRegion 0 0.88 2.86 0.09 112.22 20.86 83.54 43.64 17.85 32.44 64.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 112.40 54.36 56.78 0.00 0.51 0.06 35 I5_AR2 ActiveIntronRegion 0 0.64 3.79 0.00 107.20 21.94 95.31 36.62 17.28 27.88 58.34 0.00 0.00 0.00 0.00 0.00 0.00 0.65 136.08 77.51 55.61 0.00 0.00 0.91 36 I5_AR3 ActiveIntronRegion 0 2.31 4.99 0.00 68.65 21.89 48.94 28.16 17.52 10.53 36.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.53 13.90 30.16 0.00 0.00 0.00 37 ER6a ExonRegion 0 10.99 46.04 8.63 666.75 239.94 1548.23 360.10 219.93 352.15 794.00 0.00 0.00 0.00 2.91 0.88 0.00 0.00 1124.01 748.45 512.08 0.00 2.92 3.90 38 E6a_E7a KnownJunction 0 6.37 58.41 13.36 649.90 202.38 1324.18 385.19 158.26 357.72 744.05 0.00 0.00 0.00 4.94 0.00 0.00 0.00 1248.91 690.37 538.57 0.00 3.12 3.67 39 I6 Intron 0 1.15 4.43 0.36 73.09 18.66 79.96 41.26 18.67 23.72 42.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.45 34.43 35.47 0.00 0.62 0.07 40 I6_AR1 ActiveIntronRegion 0 1.00 2.31 0.00 66.24 15.35 66.70 33.76 16.33 21.65 33.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63.82 30.32 37.78 0.00 0.35 0.17 41 I6_SR2 SilentIntronRegion 0 1.30 5.55 0.59 83.08 21.50 92.64 46.98 21.45 26.10 49.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.06 37.99 35.14 0.00 0.59 0.00 42 E7_Aa NovelBoundary 0 7.48 0.00 3.46 109.54 24.53 115.05 42.79 18.40 38.40 58.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 152.30 64.10 43.85 0.00 0.00 0.00 43 ER7a ExonRegion 0 9.38 39.58 7.08 567.59 222.39 1719.52 368.19 178.54 353.13 733.38 0.00 0.00 0.00 0.90 0.74 0.00 0.00 1255.57 720.00 447.81 0.00 1.38 2.01 44 E7a_E8a KnownJunction 0 7.56 35.39 11.62 734.04 312.14 1967.05 453.07 213.05 396.90 760.70 0.00 0.00 0.00 2.47 0.00 0.00 0.00 1794.02 967.84 493.31 0.00 6.06 0.00 45 ER8a ExonRegion 0 9.56 88.20 8.49 601.70 314.93 1220.28 350.89 197.01 276.57 663.43 0.00 0.00 0.00 1.07 0.81 0.00 0.26 520.59 430.15 358.54 0.00 5.21 0.23 46 E8_Da KnownBoundary 0 6.52 55.65 2.57 782.32 387.52 1139.29 447.63 275.61 347.51 883.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 264.35 356.43 342.02 0.00 6.25 0.00 47 ER8b ExonRegion 0 5.98 32.41 5.00 309.94 248.99 1146.02 241.98 190.73 279.31 651.42 0.00 0.00 0.00 0.09 0.00 0.00 0.00 524.36 350.21 292.17 0.00 1.84 0.81 48 IG19_AR1 ActiveIntergenicRegion 0 0.00 1.25 0.00 36.90 0.82 5.78 2.24 9.17 15.01 58.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 6.87 0.00 0.00 0.00