Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ENPP4 Gene 0 17.74 62.83 14.21 37.89 26.77 3.94 3.67 34.28 50.48 43.24 56.45 285.61 93.96 82.85 41.65 70.22 86.30 6.99 1.77 24.73 2.35 9.20 4.38 2 321037 Transcript 0 3.83 18.95 1.98 5.29 1.83 0.00 0.29 4.60 7.57 5.86 4.76 12.64 2.69 17.00 3.29 8.21 8.81 3.09 0.00 7.91 0.00 1.12 0.00 3 371401 Transcript 0 1.06 6.10 0.61 1.02 0.67 0.00 0.00 2.16 5.25 3.44 3.87 0.00 1.17 8.53 1.45 5.20 11.55 2.31 0.00 4.79 0.00 0.52 0.00 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1b ExonRegion 0 0.22 8.56 0.44 0.40 0.71 0.48 0.00 3.13 5.44 3.41 14.61 3.58 0.26 22.76 5.31 24.75 21.99 6.16 0.00 3.94 1.72 1.45 2.29 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2b KnownJunction 0 6.08 40.52 3.49 3.56 0.00 0.00 0.00 4.76 13.89 8.97 13.79 0.00 6.66 47.09 8.90 20.08 25.81 8.66 0.00 22.31 0.00 2.69 0.00 8 ER2a ExonRegion 0 2.12 12.20 1.23 2.04 1.34 0.00 0.00 4.32 10.50 6.88 7.73 0.00 2.35 17.05 2.90 10.40 23.11 4.62 0.00 9.57 0.00 1.04 0.00 9 ER2b ExonRegion 1 7.74 29.07 5.79 20.26 12.68 2.84 2.70 17.77 49.97 30.77 101.10 359.55 134.22 135.38 29.56 126.88 183.82 17.05 2.69 42.51 5.27 9.73 6.51 10 E2a_E3a KnownJunction 1 10.45 49.66 11.00 39.39 21.48 2.38 10.51 4.39 66.12 37.23 90.34 606.20 287.16 170.64 15.58 179.10 209.91 8.83 0.00 52.86 5.50 11.63 23.99 11 ER3a ExonRegion 0 14.63 35.52 6.92 25.07 15.41 5.46 5.17 26.18 67.76 38.33 103.73 481.61 167.09 147.57 37.22 134.20 176.96 10.50 7.77 43.93 3.11 21.80 9.34 12 E3_Da NovelBoundary 1 8.74 8.16 0.00 6.93 0.00 0.00 0.00 2.42 15.10 9.00 27.01 55.97 0.00 8.12 0.00 12.73 41.33 2.11 0.00 21.73 0.00 0.00 0.00 13 E3a_E4a KnownJunction 0 20.08 18.15 5.82 31.30 8.40 0.00 2.25 31.05 49.36 32.93 56.22 308.35 120.12 85.06 24.11 46.06 95.84 5.14 8.94 24.16 0.00 5.94 0.00 14 I3 Intron 0 3.74 6.44 1.34 8.82 4.04 0.68 1.12 4.17 8.27 5.54 15.45 47.57 11.29 17.57 2.55 17.29 17.87 0.27 0.47 11.44 0.00 0.38 0.97 15 I3_SR1 SilentIntronRegion 0 3.10 3.35 0.67 6.35 2.53 0.00 2.23 1.93 5.07 3.75 14.57 46.63 11.58 14.12 1.18 16.95 15.69 0.34 0.00 6.24 0.00 0.38 0.00 16 I3_SR2 SilentIntronRegion 1 6.87 7.75 2.13 14.81 3.03 5.95 0.72 14.94 8.53 7.60 30.53 88.79 28.32 18.97 3.23 29.10 28.46 0.00 0.78 14.21 0.00 0.75 0.00 17 I3_AR4 ActiveIntronRegion 1 7.80 8.54 1.30 12.81 12.38 1.68 0.83 14.67 8.08 6.88 23.53 55.66 16.21 25.75 2.65 27.60 24.05 1.06 3.19 19.09 0.00 0.00 0.00 18 I3_SR3 SilentIntronRegion 1 7.06 10.51 1.74 13.95 5.64 1.05 0.40 6.41 10.37 5.00 25.18 52.27 12.64 31.27 3.45 32.63 30.70 0.21 1.24 19.98 0.00 0.00 3.31 19 I3_AR5 ActiveIntronRegion 0 4.56 7.35 0.85 9.02 8.44 6.63 1.32 1.73 5.51 2.29 10.85 21.31 4.69 15.74 2.01 10.75 29.96 0.00 0.00 5.24 0.00 0.00 11.29 20 I3_AR6 ActiveIntronRegion 1 5.21 6.08 3.27 8.78 4.79 0.00 0.43 3.30 9.58 7.28 19.43 31.60 8.86 15.55 3.77 12.74 18.71 0.55 0.00 10.30 0.00 1.24 0.79 21 E4_Aa NovelBoundary 1 18.45 0.00 6.53 24.61 0.00 0.00 0.00 7.97 19.01 16.04 19.79 11.55 40.91 14.30 4.57 46.31 7.85 7.96 0.00 17.58 0.00 0.00 0.00 22 ER4a ExonRegion 0 22.35 79.24 18.33 47.04 33.92 4.58 4.23 42.46 54.91 51.24 48.00 287.55 90.54 73.89 49.60 58.55 64.75 4.58 1.42 21.66 1.72 9.36 3.95 23 E4_Da KnownBoundary 0 18.15 23.15 8.16 32.00 12.99 0.00 1.68 23.82 19.65 18.70 2.26 87.48 18.67 11.48 5.56 8.03 4.68 0.00 0.00 6.52 0.00 0.00 0.00 24 ER4b ExonRegion 0 5.41 16.32 2.46 12.32 5.49 0.00 0.86 9.04 8.82 8.61 0.48 37.92 1.40 3.17 0.98 4.56 0.61 0.60 0.00 1.41 0.00 0.68 0.00