Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HLA-B Gene 0 2595.43 24.87 592.40 381.29 672.17 513.67 174.03 717.28 716.38 211.41 1279.98 906.34 591.47 3628.80 4927.89 3562.22 1922.02 0.86 0.54 0.93 1057.51 615.24 339.03 2 428231 Transcript 0 9.99 0.02 10.21 3.32 0.00 0.62 0.00 6.53 5.33 2.34 3.22 0.00 0.00 2.31 0.26 1.03 0.00 0.00 0.00 0.00 0.35 0.00 0.00 3 434333 Transcript 0 12.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 412585 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 498007 Transcript 0 141.89 0.00 44.21 6.64 10.18 28.64 7.47 28.45 35.25 4.52 49.17 29.67 21.24 191.08 147.96 148.01 141.89 0.62 0.00 0.00 33.15 17.16 15.48 6 426590 Transcript 0 0.00 0.00 4.83 0.80 5.26 5.08 0.00 6.90 8.41 0.00 15.29 2.85 0.00 54.77 54.82 24.52 6.64 0.00 0.00 0.00 1.39 0.00 0.00 7 452596 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 474381 Transcript 0 628.86 3.57 160.02 61.18 157.24 48.85 26.02 140.39 141.58 28.66 271.09 168.29 77.34 622.06 426.96 384.43 215.49 0.00 0.00 0.61 75.73 134.33 44.99 9 463574 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 497377 Transcript 1 557.82 1.64 133.42 14.75 69.42 82.50 21.93 109.42 86.28 6.62 108.99 31.28 8.39 200.52 154.71 211.57 113.22 0.00 0.60 0.00 47.36 56.94 53.42 11 481849 Transcript 0 569.82 2.28 125.81 29.79 76.72 76.03 20.71 111.51 80.95 20.12 148.24 97.43 47.47 351.07 495.41 397.46 193.64 0.03 0.00 0.34 81.89 138.39 76.33 12 ER1a ExonRegion 0 15.58 0.08 1.03 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.71 1.04 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 13 E1_Ad KnownBoundary 0 218.78 0.00 10.05 0.00 143.46 236.11 50.08 15.90 3.21 0.00 168.46 0.00 6.49 8.06 29.92 148.85 79.76 0.00 0.00 0.00 184.59 23.21 79.64 14 E1_Ae KnownBoundary 0 320.13 3.35 66.67 23.04 116.64 391.59 15.77 26.12 18.17 6.31 208.53 0.00 0.00 26.49 30.16 200.72 123.24 0.00 0.00 0.00 181.75 5.08 138.80 15 ER1b ExonRegion 0 38.10 2.03 1.23 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 2.90 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 16 ER1c ExonRegion 0 45.51 2.03 1.23 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 2.90 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 17 ER1d ExonRegion 0 214.33 4.60 2.64 0.00 0.00 0.97 0.00 1.73 2.02 0.00 0.00 0.00 0.00 9.15 14.20 3.75 1.56 0.00 0.00 0.00 2.20 1.32 0.00 18 ER1e ExonRegion 0 904.81 23.77 184.93 4.55 10.63 27.75 4.08 27.70 182.11 2.53 128.83 86.30 91.08 201.32 315.41 156.48 52.81 0.00 0.00 0.00 80.82 20.89 40.16 19 E1_Da KnownBoundary 0 18.45 0.00 0.00 3.63 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E1g KnownJunction 0 374.58 0.00 373.20 88.10 130.82 244.40 30.56 294.25 310.30 58.85 791.94 595.84 637.78 885.93 1603.44 829.53 226.93 0.00 0.00 0.00 495.33 81.75 296.89 21 E1_Af KnownBoundary 0 3.70 0.00 1.33 5.83 0.00 7.67 0.00 4.64 2.84 0.00 0.00 0.00 0.00 0.00 4.45 3.33 3.83 0.00 0.00 0.00 0.00 0.00 0.00 22 ER1f ExonRegion 0 12.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER1g ExonRegion 0 16.61 0.00 2.75 0.18 0.48 1.78 0.05 0.83 2.54 0.12 4.47 3.88 4.16 6.82 11.61 6.45 1.81 0.00 0.00 0.00 2.49 0.59 1.39 24 E1_Ag KnownBoundary 0 5.63 0.00 12.30 0.00 0.00 0.00 0.00 0.00 4.63 0.00 0.00 0.00 0.00 22.49 20.52 11.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER1h ExonRegion 0 232.78 0.55 154.63 19.39 43.89 62.53 8.55 82.77 138.55 12.55 272.06 220.05 240.27 379.61 583.37 416.61 124.29 0.00 0.00 0.00 141.67 36.94 92.45 26 E1_Ah KnownBoundary 1 1246.44 2.89 442.41 231.87 96.26 265.76 67.57 429.26 615.91 188.97 986.46 342.71 128.24 1040.44 889.06 1181.40 1412.62 3.73 0.00 5.69 1089.07 170.11 134.70 27 ER1i ExonRegion 0 454.17 5.03 186.97 8.74 83.63 110.26 28.32 135.33 365.81 5.07 50.44 69.08 52.74 2712.96 3538.56 912.89 785.39 0.00 0.00 0.00 208.11 127.63 61.58 28 E1_Db KnownBoundary 0 2757.30 21.71 759.38 106.95 1107.39 1661.49 356.61 580.58 1040.27 23.96 245.11 141.20 45.61 5295.04 5032.71 5071.92 4370.26 0.00 16.19 5.24 1869.75 813.18 330.44 29 E1b_E1i KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E1_Dc KnownBoundary 0 7.56 0.00 47.07 25.44 37.10 15.33 2.25 75.58 50.09 7.71 83.60 23.56 6.82 79.35 32.51 59.90 101.73 0.00 0.00 0.00 18.59 0.00 12.80 31 E1c_E1l KnownJunction 1 2197.72 46.44 778.54 281.45 1495.16 1510.38 385.54 895.37 945.01 252.23 1695.48 400.93 308.26 8016.64 8125.62 5995.69 5280.59 1.78 0.00 2.43 2786.78 445.29 428.35 32 E1c_E1o NovelJunction 0 2.89 0.00 6.06 0.00 0.00 29.64 0.00 0.00 1.62 0.00 4.53 20.41 6.82 18.95 0.00 41.19 26.74 0.00 0.00 0.00 5.75 6.25 0.00 33 E1_Ai KnownBoundary 0 817.77 2.57 92.75 21.64 93.97 245.09 50.74 110.90 72.25 25.98 265.96 96.03 101.45 334.75 260.09 521.66 437.96 0.00 0.00 5.88 118.49 56.09 51.39 34 ER1j ExonRegion 0 2259.63 31.13 596.76 90.16 851.71 835.51 242.18 327.61 786.67 63.26 260.94 348.36 203.48 8228.41 8242.91 4899.66 4413.55 1.71 0.00 0.00 1706.35 401.48 228.38 35 ER1k ExonRegion 0 288.11 0.00 65.63 4.94 30.10 70.03 17.79 52.50 60.06 5.16 122.38 63.05 52.76 283.61 174.08 303.34 274.39 0.00 0.00 0.00 73.00 28.91 28.82 36 ER1l ExonRegion 0 217.95 1.35 69.03 11.26 12.89 33.10 8.51 37.82 48.46 18.40 100.79 58.59 43.12 262.96 183.61 178.71 244.57 0.00 0.00 0.00 53.40 19.43 14.91 37 E1_Dd KnownBoundary 0 117.58 0.00 35.01 9.16 0.00 0.00 0.00 15.32 17.45 7.60 27.59 0.00 0.00 55.68 57.85 46.31 71.15 0.00 0.00 0.00 5.93 6.12 0.00 38 E1d_E1j KnownJunction 0 0.00 0.00 38.08 13.29 0.00 0.00 0.00 19.47 4.83 6.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E1_Aj KnownBoundary 0 65.79 0.00 40.39 12.35 0.00 14.93 4.24 27.85 31.54 1.26 11.11 7.95 0.00 46.32 43.88 62.12 80.32 0.00 0.00 0.00 5.99 12.92 18.95 40 ER1m ExonRegion 0 115.00 0.00 64.54 14.99 0.45 12.23 4.63 29.38 35.41 8.41 7.73 5.77 6.25 184.61 146.03 132.75 134.79 0.00 0.00 0.00 15.43 22.57 14.68 41 ER1n ExonRegion 0 88.24 1.79 61.57 11.33 8.21 22.86 2.99 38.91 31.73 7.19 73.30 43.48 13.87 302.56 170.35 202.08 157.59 0.03 0.00 0.00 27.45 26.64 14.71 42 E1_De KnownBoundary 0 104.98 0.00 8.66 0.00 6.88 8.01 0.00 2.51 21.56 1.64 25.37 0.00 0.00 27.08 13.35 11.62 13.18 0.00 0.00 0.00 0.00 11.33 0.00 43 E1e_E1k KnownJunction 0 24.37 0.00 1.71 0.00 0.00 2.50 0.00 4.93 16.49 3.12 12.90 0.00 0.00 8.53 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E1_Ak KnownBoundary 0 3.26 0.00 6.68 0.00 0.00 4.94 0.00 4.68 4.63 0.00 8.90 7.20 6.33 31.20 24.48 0.00 0.00 0.00 0.00 0.00 7.97 3.00 0.00 45 E1_Al KnownBoundary 0 166.55 0.00 21.52 1.86 10.95 0.00 0.00 15.53 15.86 1.58 36.90 0.00 0.00 194.95 124.48 41.27 20.57 2.57 0.00 0.00 26.93 0.00 0.00 46 ER1o ExonRegion 0 22.58 0.00 2.45 0.00 0.00 3.67 0.00 3.46 10.29 0.00 17.40 20.20 4.69 105.03 123.79 7.93 16.50 1.85 0.00 0.00 11.02 0.00 2.94 47 ER1p ExonRegion 0 170.91 1.31 33.52 4.23 38.61 32.03 9.36 11.48 37.63 2.46 16.77 22.88 15.58 480.45 444.72 201.15 175.65 1.91 0.00 0.00 79.73 11.61 6.92 48 ER1q ExonRegion 0 1198.12 22.28 459.40 232.45 421.81 340.51 96.76 418.29 1012.23 139.41 1192.07 1109.11 1005.56 8771.94 10848.91 4735.82 3136.54 1.73 4.73 7.50 2333.20 288.87 358.22 49 E1_Df KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.49 0.00 0.00 0.00 0.00 389.55 206.32 0.00 0.00 0.00 0.00 0.00 31.75 0.00 0.00 50 E1f_E1m KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 4.19 1.22 0.00 0.00 0.00 0.00 9.89 8.90 10.68 3.74 0.00 0.00 0.00 0.00 0.00 0.00 51 E1f_E1o KnownJunction 0 0.00 11.58 0.00 0.00 0.00 2.16 0.00 1.85 1497.21 0.00 4.42 0.00 0.00 10166.98 15121.00 29.56 4.21 0.00 0.00 0.00 2438.23 0.00 7.68 52 ER1r ExonRegion 0 628.86 3.57 160.02 61.18 157.24 48.85 26.02 140.39 141.58 28.66 271.09 168.29 77.34 622.06 426.96 384.43 215.49 0.00 0.00 0.61 75.73 134.33 44.99 53 E1_Am KnownBoundary 0 379.40 0.00 107.98 33.53 87.27 46.22 7.91 137.35 59.32 16.25 85.44 112.39 87.82 282.65 194.33 383.75 102.48 0.00 0.00 0.00 37.13 72.99 46.61 54 E1_An KnownBoundary 0 225.74 0.00 104.11 45.95 86.93 18.17 17.97 104.62 71.21 13.30 103.03 137.14 34.90 383.90 229.68 402.03 143.52 0.00 0.00 0.00 28.42 144.94 65.64 55 ER1s ExonRegion 1 566.70 2.03 204.33 83.48 196.67 67.39 26.48 262.29 154.08 32.11 268.67 425.37 198.15 1103.59 836.29 811.39 276.45 0.00 0.00 0.00 82.64 282.32 130.68 56 ER1t ExonRegion 0 342.58 5.72 196.00 85.63 245.33 83.84 24.53 270.61 184.13 28.24 447.92 336.07 136.60 1173.71 822.60 615.28 317.92 0.00 0.00 0.00 162.70 241.07 128.02 57 E1_Dg KnownBoundary 1 467.71 0.00 185.74 70.49 200.42 60.82 9.94 221.18 170.83 28.37 517.39 284.64 86.84 492.03 371.22 304.28 365.03 0.00 0.00 0.00 193.98 145.80 70.17 58 E1g_E1o KnownJunction 0 0.00 0.00 8.34 1.60 10.53 10.16 0.00 9.61 15.60 0.00 30.59 5.70 0.00 99.65 100.75 38.37 9.54 0.00 0.00 0.00 2.78 0.00 0.00 59 ER1u ExonRegion 0 1112.65 2.73 190.87 61.35 175.46 69.89 23.33 208.48 173.92 25.62 355.67 254.10 135.21 792.73 576.85 491.50 355.28 0.00 0.00 0.00 158.18 148.03 76.51 60 E1_Ao KnownBoundary 0 1408.69 3.09 232.84 60.20 213.24 55.20 21.64 206.73 161.98 20.50 362.46 275.64 160.87 1195.01 735.65 797.14 446.38 0.00 0.00 0.00 122.63 194.17 115.41 61 ER1v ExonRegion 0 3668.68 39.42 507.50 338.40 538.67 505.34 269.77 586.09 1208.93 150.15 907.55 704.03 747.32 6593.65 7867.99 7332.83 2793.97 2.22 0.00 0.00 1532.99 659.79 547.56 62 E1_Dh KnownBoundary 1 2057.03 29.99 289.17 187.19 350.34 532.25 152.10 302.55 624.47 92.03 704.34 79.38 16.07 2044.92 3780.34 2778.84 1467.41 2.11 19.20 18.47 1197.86 494.83 427.33 63 E1_Di KnownBoundary 0 4570.14 46.83 872.47 865.82 654.41 945.88 229.07 884.45 884.94 349.02 1009.26 903.29 782.09 8598.19 11001.33 7815.39 2536.14 11.98 8.47 3.26 1377.02 1275.68 894.69 64 ER1w ExonRegion 1 3432.71 34.57 601.09 500.00 495.55 598.67 216.51 686.43 886.65 188.32 250.12 795.18 526.53 6787.95 8205.52 6933.38 540.03 5.54 0.00 0.00 961.26 972.31 670.14 65 ER1x ExonRegion 0 7738.35 79.36 1148.17 808.99 1071.98 1572.09 501.60 1506.84 1586.85 499.67 2923.63 1374.16 1217.10 10416.60 13528.47 8938.54 4310.12 2.39 0.00 0.00 2658.07 1432.40 1007.40 66 E1_Dj KnownBoundary 0 20096.90 161.22 3377.38 2222.16 2867.66 3520.02 1177.60 4145.11 4505.60 1282.85 5758.14 3345.19 2733.10 13144.39 17746.38 13856.79 8493.49 4.68 9.41 191.69 4109.12 3766.53 1915.63 67 ER1y ExonRegion 0 8938.85 84.12 1764.52 1247.26 1908.13 1757.65 573.90 2489.60 2264.45 841.35 4606.36 2086.86 1449.22 9435.72 12717.88 10826.17 6478.63 2.60 0.00 0.00 3649.82 1808.47 1070.53 68 E1k_E2a KnownJunction 0 13069.35 116.03 2288.51 1801.87 3998.98 2186.70 662.48 3645.20 3085.88 1139.54 8422.76 3870.06 2712.81 11978.57 15668.13 19134.98 11064.32 10.49 0.00 0.00 6004.95 2595.26 1631.29 69 E1k_E3c NovelJunction 0 0.00 0.00 46.78 23.77 8.23 18.85 0.00 10.97 74.22 2.74 40.27 0.00 0.00 80.35 66.14 104.08 61.52 0.00 0.00 0.00 3.03 0.00 15.71 70 ER2a ExonRegion 0 7141.33 72.58 2206.78 1669.79 2985.05 1705.17 544.84 3180.19 2825.21 1109.30 7245.61 4411.42 2434.13 12741.29 16039.99 16168.22 9298.00 9.68 0.00 0.96 5547.94 2759.52 1482.17 71 E2_Da KnownBoundary 0 9714.39 100.84 2513.19 2032.28 4057.56 2636.21 906.00 3673.42 3086.46 1168.33 7745.80 4351.12 2285.73 11325.32 17904.49 16261.97 9784.93 4.15 0.00 3.20 6061.97 3367.84 1670.64 72 ER2b ExonRegion 0 8335.41 67.92 2440.90 1923.51 3744.26 1891.41 688.48 3609.70 2912.36 1094.36 7186.78 3101.63 1869.45 11938.63 18117.84 13274.90 8810.64 3.20 2.44 1.13 5328.94 2642.11 1241.56 73 E2_Db NovelBoundary 0 9684.53 49.66 1687.73 1346.72 3421.73 1076.60 358.56 2291.85 1874.46 626.82 4401.80 2365.52 1594.21 6565.63 8551.11 9374.55 5942.86 1.62 0.00 0.00 3348.33 1598.87 707.75 74 E2c_E3c KnownJunction 1 7039.17 41.70 2072.22 1654.10 2215.20 583.19 186.63 2944.35 2435.42 890.12 4061.98 935.25 728.04 9823.40 15033.35 15957.10 8423.65 2.57 0.00 0.00 4038.57 2033.56 597.88 75 ER2c ExonRegion 0 9760.11 84.73 2622.95 2044.69 3725.71 1866.56 580.78 3962.88 3153.00 1164.11 7101.47 3450.01 2402.23 14789.77 18171.32 17358.80 9897.41 1.85 1.06 0.43 5474.90 2882.34 1402.93 76 ER3a ExonRegion 0 557.82 1.64 133.42 14.75 69.42 82.50 21.93 109.42 86.28 6.62 108.99 31.28 8.39 200.52 154.71 211.57 113.22 0.00 0.60 0.00 47.36 56.94 53.42 77 E3_Ab KnownBoundary 0 1131.76 2.89 324.77 98.99 109.34 172.51 38.47 245.29 179.34 32.18 142.46 29.11 6.82 200.60 273.32 271.04 156.05 0.00 0.00 0.00 62.33 81.38 82.97 78 ER3b ExonRegion 0 561.60 1.99 194.50 35.28 125.68 125.34 33.28 168.42 123.70 16.61 186.46 75.54 29.67 314.95 314.01 369.51 215.82 0.01 0.00 0.02 103.45 92.99 73.87 79 E3_Ac KnownBoundary 0 562.62 0.00 125.60 10.49 71.99 69.56 18.33 71.72 78.33 8.97 94.81 24.76 0.00 221.14 180.36 178.41 116.13 0.00 0.00 0.00 44.73 26.51 28.00 80 ER3c ExonRegion 0 8072.13 78.04 2997.33 2146.37 3292.34 1987.67 588.67 4354.68 3488.74 1346.86 7822.56 5800.13 3013.20 15449.18 23223.71 20672.62 10292.71 3.18 0.00 2.13 5655.41 3820.46 1961.86 81 E3_Da KnownBoundary 0 402.22 6.05 78.80 12.65 45.67 76.26 12.19 70.73 33.51 2.77 37.27 6.15 0.00 185.77 286.92 202.00 73.40 0.00 0.00 0.00 35.58 112.18 54.46 82 E3a_E3d KnownJunction 0 9181.33 66.04 2215.30 1871.09 4434.55 2301.29 719.45 3436.17 2655.93 1067.06 9031.55 10013.96 4871.11 14924.97 19582.35 22019.35 9671.89 2.24 0.00 2.94 5730.84 4378.32 2442.24 83 ER3d ExonRegion 0 569.82 2.28 125.81 29.79 76.72 76.03 20.71 111.51 80.95 20.12 148.24 97.43 47.47 351.07 495.41 397.46 193.64 0.03 0.00 0.34 81.89 138.39 76.33 84 E3_Ad KnownBoundary 0 583.58 3.03 103.10 12.52 85.82 68.03 37.67 59.11 33.97 7.20 79.55 60.47 12.17 192.60 252.92 263.35 137.73 0.00 0.00 0.00 28.29 84.07 64.79 85 ER3e ExonRegion 0 10024.27 83.59 3640.21 2452.18 4175.19 2304.50 765.19 4949.96 3928.11 1523.53 9529.97 7676.42 4039.81 17098.66 26425.29 23114.22 10768.93 2.16 0.00 3.80 6156.55 4499.83 2418.73 86 E3b_E4a KnownJunction 0 15806.88 124.65 4275.84 2802.51 5926.66 2821.78 927.33 5469.21 4239.13 1532.55 10430.85 9355.10 4680.86 19423.78 30633.12 23384.38 12118.55 0.00 0.00 3.00 6656.57 4999.41 2369.17 87 ER4a ExonRegion 0 7243.81 69.16 1328.02 997.35 1726.44 1414.94 504.39 1563.13 1320.11 469.89 2284.15 2142.68 1342.11 4832.77 8084.98 6730.16 3269.60 1.23 0.00 0.34 1370.10 1438.83 607.22 88 ER4b ExonRegion 0 1780.52 6.61 101.40 127.09 328.45 141.66 78.78 157.29 97.57 54.48 289.45 309.56 177.05 505.10 721.69 610.77 401.06 0.00 0.00 0.00 71.07 44.27 44.05 89 IG32_SR2 SilentIntergenicRegion 0 11.64 0.00 0.00 0.58 0.00 1.83 0.00 0.00 1.24 0.00 3.04 0.00 0.00 0.12 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00