Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HCG25 Gene 0 30.35 9.28 11.73 10.70 20.47 5.78 9.04 8.32 7.45 9.71 5.81 13.42 12.88 10.03 17.83 15.57 9.80 4.50 7.70 8.53 5.98 2.94 6.21 2 450514 Transcript 0 11.87 4.71 4.06 2.73 4.09 2.09 1.79 2.10 2.45 1.98 1.29 0.00 0.00 1.94 12.97 3.61 3.69 0.00 0.00 2.13 0.00 0.16 0.00 3 422366 Transcript 0 45.23 14.96 18.27 12.35 25.51 10.18 9.37 8.85 10.25 18.32 6.68 14.36 13.55 14.16 16.87 14.24 8.32 3.68 5.68 7.02 6.02 3.29 6.13 4 427196 Transcript 0 9.81 1.11 3.54 1.57 10.82 0.90 4.74 0.86 1.29 1.88 0.77 1.83 5.58 2.35 7.70 0.86 2.42 0.33 0.28 0.09 1.03 0.00 0.00 5 442228 Transcript 0 9.62 0.19 7.35 10.16 14.00 0.01 0.31 6.86 4.57 7.53 1.49 9.91 0.36 3.66 10.65 5.90 4.38 1.12 11.86 1.57 4.55 1.35 0.00 6 IG11_AR1 ActiveIntergenicRegion 0 4.08 5.59 26.93 6.67 17.15 4.16 6.04 17.13 6.70 14.79 2.28 2.84 0.00 3.04 1.48 0.96 0.35 2.76 3.07 7.77 1.35 1.86 2.29 7 IG11_AR3 ActiveIntergenicRegion 0 0.68 1.76 13.96 1.80 14.24 5.09 1.27 9.60 6.32 13.09 2.32 7.09 0.91 3.35 1.78 1.81 1.63 6.40 7.34 7.24 3.07 2.29 4.01 8 IG11_SR4 SilentIntergenicRegion 0 2.01 2.00 17.47 1.68 6.65 2.49 1.37 9.84 5.61 11.65 2.31 2.55 0.00 2.37 2.65 2.34 1.96 8.77 4.81 7.18 5.13 2.59 5.42 9 IG11_AR4 ActiveIntergenicRegion 0 2.18 0.38 18.25 3.08 4.82 1.10 1.19 5.85 2.62 8.92 1.80 1.30 0.00 1.63 0.61 3.86 1.98 7.80 2.87 4.82 0.69 1.25 3.97 10 ER1a ExonRegion 1 11.87 4.71 4.06 2.73 4.09 2.09 1.79 2.10 2.45 1.98 1.29 0.00 0.00 1.94 12.97 3.61 3.69 0.00 0.00 2.13 0.00 0.16 0.00 11 E1_Ab KnownBoundary 0 28.82 10.06 10.47 7.42 8.66 5.79 4.11 12.69 3.94 8.22 2.58 0.00 0.00 0.00 11.37 4.27 4.21 5.64 0.00 0.00 2.66 0.00 0.00 12 E1_Ac KnownBoundary 0 25.12 2.57 16.62 3.50 12.14 0.00 3.67 8.21 4.95 13.16 0.00 0.00 0.00 2.47 4.45 8.63 9.35 11.61 3.95 0.00 0.00 2.82 0.00 13 ER1b ExonRegion 0 31.57 8.98 10.93 6.13 13.38 4.28 5.08 6.91 4.94 5.93 1.93 0.00 0.00 3.25 15.72 10.90 9.90 2.16 3.72 3.01 0.55 2.08 0.00 14 ER1c ExonRegion 0 82.90 9.93 9.28 10.70 23.45 2.08 6.57 11.07 5.13 8.57 1.83 0.00 0.00 6.11 8.90 17.33 8.50 8.11 7.50 12.30 5.60 3.00 7.62 15 E1_Da NovelBoundary 0 5.93 2.63 26.70 11.32 15.87 6.30 3.67 19.22 11.63 10.50 2.26 0.00 0.00 0.00 0.00 12.90 12.90 6.01 4.24 8.56 4.70 3.00 17.76 16 E1a_E2a KnownJunction 0 2.74 0.00 2.93 12.42 3.31 0.00 0.00 8.75 3.33 5.83 0.00 0.00 0.00 2.47 0.00 0.00 3.83 4.73 0.00 0.00 0.00 0.00 0.00 17 I1 Intron 0 4.03 0.77 18.76 0.00 6.11 3.49 3.02 10.78 7.01 7.81 7.36 2.71 1.47 6.58 13.77 5.66 8.79 8.04 7.27 11.34 10.06 1.59 6.71 18 I1_SR1 SilentIntronRegion 0 4.09 0.79 19.05 0.00 6.20 3.54 3.07 10.93 7.11 7.92 7.47 2.76 1.49 6.68 13.96 5.74 8.93 8.13 7.36 11.51 10.22 1.61 6.81 19 E2_Aa NovelBoundary 0 6.37 3.35 46.01 14.82 10.87 2.38 0.00 14.29 10.36 15.02 4.53 15.30 0.00 16.78 13.72 47.68 17.67 16.33 12.52 17.00 5.19 3.06 16.05 20 ER2a ExonRegion 1 23.43 6.57 15.27 10.52 30.26 8.56 5.23 3.47 4.79 13.97 4.95 8.75 7.74 2.16 13.69 13.91 6.21 11.35 8.76 13.43 6.57 1.08 7.43 21 E2_Da NovelBoundary 0 14.00 10.06 37.96 7.19 3.65 0.00 4.11 11.34 11.05 16.68 9.69 12.00 6.82 4.94 9.52 4.36 9.35 7.46 11.95 15.40 11.98 9.06 8.28 22 E2a_E3b KnownJunction 0 12.59 11.38 9.82 1.76 12.14 5.51 0.00 0.00 5.24 12.54 2.68 6.30 0.00 2.47 4.82 0.00 4.77 0.00 0.00 3.26 3.09 0.00 0.00 23 E2a_E3c KnownJunction 0 0.00 0.00 1.83 12.89 0.00 8.23 2.25 0.00 0.00 1.67 2.68 0.00 0.00 0.00 5.19 4.36 0.00 4.97 4.80 0.00 2.35 0.00 0.00 24 I2 Intron 0 7.06 4.07 21.70 7.05 14.29 5.14 4.07 6.53 7.62 15.06 4.39 3.74 2.69 5.06 7.27 8.33 4.41 12.39 5.95 13.35 8.82 3.62 11.37 25 I2_SR1 SilentIntronRegion 0 7.10 4.09 21.81 7.08 14.36 5.15 4.08 6.57 7.65 15.14 4.41 3.76 2.70 5.09 7.30 8.38 4.43 12.45 5.99 13.41 8.87 3.64 11.43 26 E3_Aa NovelBoundary 0 24.82 22.50 35.72 15.95 23.94 20.73 24.78 26.74 9.03 32.45 15.90 11.85 0.00 24.25 14.83 14.44 8.04 20.27 12.14 49.60 9.20 10.65 4.35 27 ER3a ExonRegion 0 2.05 0.37 0.03 0.01 0.74 0.01 0.61 0.40 0.02 0.55 0.30 0.01 0.72 0.02 0.40 0.00 0.53 0.28 0.48 0.33 1.01 0.00 0.00 28 E3_Ab KnownBoundary 0 0.00 0.00 1.80 0.00 0.00 0.00 0.00 2.55 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 29 E3_Ac KnownBoundary 0 52.08 51.70 43.11 69.69 64.60 48.55 19.17 77.92 35.45 63.58 29.06 37.36 34.09 57.10 116.20 62.29 56.38 87.14 69.93 25.95 62.89 24.31 37.65 30 ER3b ExonRegion 0 13.00 10.75 11.55 4.67 19.49 4.45 2.08 1.73 5.12 10.16 2.49 4.33 0.67 3.25 9.12 2.97 9.43 1.06 0.91 2.74 1.26 0.00 0.42 31 ER3c ExonRegion 0 7.31 5.18 11.78 22.42 11.58 2.43 5.00 8.10 7.40 12.06 3.76 7.61 0.44 9.28 17.99 9.76 8.10 4.57 9.42 3.72 11.44 0.88 1.45 32 E3_Da NovelBoundary 0 633.15 335.86 268.32 325.10 379.71 398.07 166.85 299.14 196.12 389.87 354.56 200.92 256.31 413.27 684.96 388.10 467.60 348.17 297.61 245.63 414.46 133.37 172.77 33 E3a_E4a KnownJunction 0 0.00 0.00 0.00 2.80 0.00 0.00 0.00 0.00 0.00 1.45 2.42 12.60 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E3a_E4c KnownJunction 0 17.19 0.00 14.67 20.31 27.25 0.00 0.00 13.31 9.11 14.51 2.68 19.81 0.00 7.30 20.89 11.79 8.23 1.95 23.25 2.81 8.09 2.69 0.00 36 Ix Intron 0 27.61 14.47 11.70 8.19 28.56 16.53 11.31 8.55 4.80 8.11 6.42 9.30 9.36 15.12 17.25 16.92 7.83 13.52 14.36 15.14 9.93 2.47 10.45 37 Ix_SR1 SilentIntronRegion 0 31.33 16.35 13.44 9.00 33.01 19.03 12.51 9.74 5.27 9.18 6.40 9.32 8.91 15.92 19.66 19.00 8.23 14.60 15.09 14.88 10.41 2.18 10.99 38 E4_Aa NovelBoundary 0 29.78 12.10 11.27 9.42 33.28 5.79 24.33 2.51 9.46 9.91 9.16 12.60 21.91 9.95 5.19 15.30 0.00 29.80 3.95 6.46 15.44 12.49 4.27 39 ER4a ExonRegion 0 3.30 1.97 9.49 8.61 3.73 4.53 1.81 10.03 9.17 2.40 3.75 7.67 17.05 6.45 15.08 22.70 7.65 0.34 2.17 8.64 4.77 3.00 3.34 40 E4_Ab KnownBoundary 0 177.96 108.80 157.77 148.63 141.00 207.83 102.02 143.06 120.40 194.94 108.03 98.58 46.10 287.66 342.54 231.56 202.15 199.14 190.97 150.33 130.91 158.23 124.89 41 E4_Ac KnownBoundary 0 153.36 118.53 107.92 157.76 115.87 221.01 110.19 161.38 142.36 241.33 132.09 96.93 88.63 251.28 246.86 229.68 197.66 208.63 132.80 115.50 166.24 160.49 98.59 42 ER4b ExonRegion 0 3.66 3.14 12.37 9.66 1.95 4.42 1.26 12.49 7.30 6.46 1.85 8.46 7.25 6.50 19.12 16.35 7.20 3.70 3.19 4.64 6.11 0.57 3.07 43 ER4c ExonRegion 0 19.29 6.33 18.91 20.09 17.66 13.47 5.26 20.94 12.77 14.91 16.90 50.22 16.08 15.41 23.13 20.97 24.33 15.63 20.66 8.09 7.74 1.31 6.96 44 E4_Da KnownBoundary 0 6.15 2.89 5.29 4.00 0.00 18.51 0.00 7.02 1.77 0.00 11.90 18.61 19.32 6.65 4.45 7.95 4.02 4.35 4.71 2.68 7.72 0.00 0.00 45 ER4d ExonRegion 0 39.83 17.53 33.41 34.80 58.15 6.22 15.66 21.98 25.28 23.70 19.44 41.59 43.47 16.61 33.96 25.33 28.55 12.00 11.53 20.23 17.41 5.08 17.91 46 E4_Db KnownBoundary 0 45.12 15.19 39.92 42.15 23.77 0.00 20.31 25.14 23.29 25.95 15.06 51.17 41.23 26.37 57.36 43.92 17.58 4.68 9.22 9.08 29.28 5.57 23.47 47 E4b_E5a KnownJunction 0 0.00 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.42 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 48 ER4e ExonRegion 0 77.88 18.55 26.72 22.94 38.88 14.85 18.75 17.69 15.27 24.09 10.68 22.43 27.09 25.84 28.91 28.48 11.87 7.35 11.36 10.78 8.96 6.57 12.25 49 E4_Dc NovelBoundary 0 375.10 200.49 155.58 142.81 224.36 264.22 137.13 156.99 125.81 224.86 135.03 177.96 167.85 289.19 179.37 181.49 250.12 168.26 126.69 168.23 182.61 125.28 121.64 50 Ix Intron 0 20.58 6.64 11.05 12.13 32.20 4.23 11.39 12.11 8.36 9.81 2.46 18.91 34.19 9.04 13.30 9.24 8.68 1.46 4.06 7.63 3.16 2.32 5.15 51 Ix_SR1 SilentIntronRegion 0 20.67 6.68 11.10 12.19 32.35 4.25 11.45 12.16 8.40 9.85 2.47 19.00 34.33 9.08 13.36 9.28 8.72 1.47 4.08 7.67 3.17 2.33 5.17 52 E5_Aa NovelBoundary 0 33.78 6.25 11.00 10.52 40.32 5.22 18.77 6.04 12.82 5.26 6.53 18.46 13.31 14.07 4.45 11.54 7.67 12.27 0.00 9.52 2.78 11.14 19.72 53 ER5a ExonRegion 0 37.21 17.73 8.16 4.88 27.52 6.86 17.94 7.70 7.45 6.70 8.12 24.35 19.77 14.70 31.51 26.79 18.24 3.10 15.10 16.64 6.68 6.01 10.30 54 E5_Da KnownBoundary 0 53.64 5.92 32.61 11.95 69.02 6.19 26.14 22.43 8.71 9.05 2.42 16.96 44.15 7.24 13.47 7.43 11.78 3.44 7.34 4.60 5.87 0.00 6.15 55 ER5b ExonRegion 0 19.61 2.21 7.08 3.15 21.64 1.79 9.47 1.73 2.58 2.09 1.55 3.66 11.15 4.69 15.41 1.72 4.84 0.66 0.57 0.19 2.06 0.00 0.00