Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GPSM3 Gene 0 270.65 4.84 34.15 35.54 115.83 27.88 29.29 79.24 49.07 25.15 565.42 116.07 174.77 513.68 444.21 380.69 467.86 3.69 36.76 11.81 7.29 17.89 22.64 2 375043 Transcript 0 1.47 0.80 2.03 2.32 5.34 0.70 1.26 1.29 2.95 2.53 1.86 1.48 0.30 0.62 1.79 0.54 0.35 0.25 0.63 1.45 0.23 1.00 0.58 3 402726 Transcript 0 1.76 0.00 3.98 3.86 5.57 0.15 2.54 1.30 0.62 1.24 0.16 0.36 4.30 3.52 0.97 0.00 0.00 0.00 0.00 0.71 0.00 0.17 0.00 4 375040 Transcript 1 25.01 0.74 2.67 5.64 25.91 19.84 3.25 12.57 6.57 3.44 142.33 7.87 21.53 223.83 216.54 157.93 139.69 0.84 26.79 3.00 5.21 10.42 9.48 5 472768 Transcript 0 13.71 0.00 0.00 3.10 14.26 0.00 0.00 6.04 9.40 0.00 43.80 18.76 13.64 42.26 15.58 25.81 38.43 0.00 0.00 0.00 0.00 0.00 0.00 6 403803 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 487761 Transcript 0 18.87 2.65 2.05 1.27 2.44 1.00 2.10 5.03 2.55 0.92 24.79 7.03 19.36 27.58 23.65 18.79 18.25 0.56 1.18 0.14 0.05 1.09 0.70 8 ER1a ExonRegion 0 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.10 0.07 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 9 E1_Da NovelBoundary 0 10.30 0.00 37.14 7.72 31.75 0.00 1.81 13.80 8.10 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 8.66 0.00 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 17.63 10.85 38.88 20.68 22.75 2.33 4.46 13.51 27.43 24.90 0.00 5.85 13.64 2.47 0.00 0.00 0.00 2.11 0.00 14.89 0.00 11.39 0.00 12 ER2a ExonRegion 0 3.53 2.21 7.06 9.94 7.31 3.02 1.47 2.83 12.02 9.26 4.24 4.33 1.82 0.02 3.03 3.26 0.00 1.41 1.75 4.67 0.00 3.43 1.64 13 E2_Da NovelBoundary 0 20.45 21.31 24.60 16.25 23.94 2.90 4.42 12.45 22.31 11.63 2.68 0.00 0.00 2.47 0.00 0.00 0.00 3.15 0.00 14.96 0.00 2.39 3.50 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 I2 Intron 0 9.72 8.41 10.07 10.26 31.96 0.00 5.47 11.83 16.07 13.35 1.78 6.90 1.77 1.84 0.00 1.37 1.52 1.70 2.93 9.78 0.00 2.87 0.00 16 I2_SR1 SilentIntronRegion 0 9.81 8.49 10.16 10.36 32.21 0.00 5.52 11.94 16.20 13.47 1.79 6.97 1.79 1.86 0.00 1.38 1.53 1.71 2.95 9.86 0.00 2.90 0.00 17 E3_Aa NovelBoundary 0 37.27 22.04 61.23 61.13 58.83 5.34 36.35 64.65 76.79 70.14 7.26 30.91 0.00 3.00 11.13 32.04 21.97 55.75 8.56 32.15 5.44 10.59 11.78 18 ER3a ExonRegion 0 5.28 2.59 1.47 2.22 16.38 1.15 3.82 2.37 2.61 4.59 4.25 4.54 0.00 1.22 2.22 0.00 2.08 0.00 2.01 4.02 1.39 2.57 1.81 19 E3_Da NovelBoundary 0 15.93 5.53 24.78 24.84 26.66 5.28 15.72 20.62 34.72 16.31 4.84 6.15 0.00 3.00 4.45 0.00 4.77 10.99 7.91 19.43 2.84 8.51 8.71 20 E3a_E4b KnownJunction 0 0.00 0.00 3.61 1.73 8.32 0.00 2.25 2.55 2.95 1.24 2.68 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I3 Intron 0 4.76 3.58 15.34 11.71 22.23 4.30 7.89 13.34 13.49 11.69 2.27 4.98 0.84 1.82 0.52 1.16 1.29 3.86 1.87 6.24 1.51 3.05 2.58 22 I3_SR1 SilentIntronRegion 0 4.76 3.58 15.34 11.71 22.23 4.30 7.89 13.34 13.49 11.69 2.27 4.98 0.84 1.82 0.52 1.16 1.29 3.86 1.87 6.24 1.51 3.05 2.58 23 E4_Aa NovelBoundary 0 7.41 0.00 11.71 12.05 32.26 8.69 8.88 7.06 15.16 12.44 0.00 0.00 19.32 19.25 4.45 0.00 0.00 2.11 3.48 3.26 2.90 0.00 0.00 24 E4_Ab NovelBoundary 0 23.34 0.00 19.28 12.45 15.20 2.90 2.25 4.81 12.88 1.56 5.37 0.00 6.01 14.30 0.00 0.00 0.00 0.00 4.80 3.26 5.56 6.06 0.00 25 ER4a ExonRegion 0 1.76 0.00 3.98 3.86 5.57 0.15 2.54 1.30 0.62 1.24 0.16 0.36 4.30 3.52 0.97 0.00 0.00 0.00 0.00 0.71 0.00 0.17 0.00 26 ER4b ExonRegion 0 11.32 3.19 9.14 8.52 24.24 4.49 5.79 5.37 3.07 9.06 8.64 4.43 2.43 15.58 4.93 9.20 3.98 1.69 0.00 5.13 0.00 1.48 1.84 27 E4_Da NovelBoundary 0 2.82 9.01 10.35 5.79 33.02 4.83 1.77 10.88 22.54 16.90 0.00 6.30 0.00 0.00 0.00 4.36 0.00 4.89 0.00 5.75 0.00 5.08 0.00 28 E4a_E5e KnownJunction 0 3.04 3.35 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 2.21 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 29 E5_Aa NovelBoundary 0 11.11 0.00 13.93 8.26 37.27 5.62 2.21 9.45 13.34 11.50 17.79 5.70 0.00 27.55 31.89 12.82 27.58 2.03 9.22 10.87 0.00 0.00 0.00 30 ER5a ExonRegion 1 25.01 0.74 2.67 5.64 25.91 19.84 3.25 12.57 6.57 3.44 142.33 7.87 21.53 223.83 216.54 157.93 139.69 0.84 26.79 3.00 5.21 10.42 9.48 31 E5_Ad KnownBoundary 1 143.80 3.35 23.06 21.04 121.39 22.54 20.18 53.27 27.00 16.73 459.33 23.41 81.49 190.18 364.42 601.81 469.19 2.36 86.97 9.08 13.28 17.70 47.29 32 ER5b ExonRegion 1 58.20 2.03 6.13 6.81 62.88 24.76 7.94 24.20 12.66 4.87 271.09 17.32 66.83 363.80 388.77 335.85 290.48 1.85 59.73 6.38 8.26 15.11 25.70 33 ER5c ExonRegion 1 88.73 2.03 11.69 12.58 91.59 31.88 13.24 32.04 22.80 9.70 402.79 21.65 83.34 421.90 495.00 492.69 412.87 1.85 76.20 8.84 13.22 19.07 32.08 34 ER5d ExonRegion 0 90.38 1.13 17.00 11.19 62.10 30.27 21.25 29.61 22.63 15.41 263.45 27.14 72.68 239.59 221.42 278.70 253.30 2.78 38.12 9.78 8.24 14.01 17.02 35 E5_Ae KnownBoundary 0 280.79 0.00 9.64 13.78 75.21 12.83 15.15 42.51 23.58 11.39 233.74 112.84 177.75 277.95 172.69 152.27 307.15 3.98 17.98 8.05 5.62 5.51 11.61 36 ER5e ExonRegion 0 215.67 4.35 22.48 8.29 47.38 11.00 7.35 42.26 28.75 21.00 347.79 85.25 255.04 366.63 304.18 336.26 324.91 4.17 26.97 7.78 4.90 12.47 18.63 37 E5a_E6a KnownJunction 0 10.22 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 4.95 5.40 13.64 9.12 0.00 3.85 3.93 0.00 0.00 0.00 0.00 0.00 0.00 38 E5a_E6b KnownJunction 0 163.21 0.00 36.72 13.15 21.22 2.78 4.28 54.14 39.44 30.49 424.27 77.13 235.21 552.42 581.74 604.12 437.96 3.98 58.54 3.26 0.00 22.29 48.06 39 E5a_E7a NovelJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 4.03 0.00 0.00 11.85 16.96 6.82 7.36 4.45 3.59 17.67 0.00 0.00 0.00 0.00 0.00 0.00 40 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER6a ExonRegion 0 27.51 5.30 4.10 2.55 4.89 1.99 4.20 7.52 5.10 1.85 44.62 8.66 25.08 46.04 47.30 33.73 32.58 1.12 2.35 0.28 0.10 2.17 1.40 42 ER6b ExonRegion 0 110.72 2.27 19.68 15.58 21.54 14.99 13.46 66.94 42.95 28.28 563.08 94.82 180.15 648.79 558.66 335.62 532.09 5.07 40.57 7.68 10.09 19.67 17.07 43 E6_Da NovelBoundary 0 98.54 2.57 6.56 5.29 29.80 2.50 6.18 24.32 20.08 6.53 52.28 12.00 25.49 65.16 121.27 58.10 67.04 0.00 0.00 5.31 0.00 3.12 0.00 44 E6a_E7a KnownJunction 0 93.87 3.22 18.15 8.62 31.32 24.59 21.90 35.69 27.17 25.49 345.40 49.22 107.46 384.19 344.27 172.35 375.22 2.32 8.09 11.06 5.81 5.69 19.21 45 E6a_E7b KnownJunction 0 13.71 0.00 0.00 3.10 14.26 0.00 0.00 6.04 9.40 0.00 43.80 18.76 13.64 42.26 15.58 25.81 38.43 0.00 0.00 0.00 0.00 0.00 0.00 46 I6 Intron 0 107.93 0.43 5.07 4.33 19.98 2.74 8.19 15.94 16.10 10.58 98.17 20.81 39.62 104.38 77.13 57.71 71.14 0.98 2.04 5.45 0.94 2.22 3.13 47 I6_AR1 ActiveIntronRegion 0 108.83 0.44 5.11 4.37 20.15 2.76 8.26 16.07 16.24 10.67 98.94 20.97 39.95 105.22 77.76 58.20 71.73 0.99 2.06 5.49 0.95 2.24 3.16 48 E7_Aa NovelBoundary 0 120.91 0.00 3.25 4.13 44.99 7.95 5.87 8.87 12.70 7.39 103.55 43.06 40.26 75.11 52.41 63.74 80.32 0.00 0.00 8.31 0.00 2.63 0.00 49 ER7a ExonRegion 0 140.67 3.70 24.51 10.06 59.62 17.02 11.30 41.26 34.14 20.26 451.60 69.05 103.06 472.54 364.44 195.78 374.69 1.75 6.86 10.53 2.20 8.92 13.33 50 E7_Ab KnownBoundary 1 255.60 6.64 41.04 13.88 110.53 25.21 9.14 66.29 52.63 23.53 599.94 71.12 68.66 577.55 378.76 252.24 447.87 1.66 8.38 18.34 0.00 13.66 21.68 51 ER7b ExonRegion 0 307.62 4.61 42.30 30.64 205.83 59.80 42.50 109.87 69.64 32.55 842.44 176.86 388.05 972.94 750.58 610.84 701.96 6.29 47.25 16.29 8.66 27.28 38.45 52 E7a_E8a KnownJunction 0 245.45 11.05 34.18 30.43 74.36 22.37 40.10 107.90 60.47 22.56 898.54 163.85 322.54 728.65 553.31 434.16 777.00 3.61 15.34 5.82 14.27 28.53 44.30 53 ER8a ExonRegion 0 536.87 8.99 63.15 74.44 206.41 38.41 51.78 151.09 88.67 41.29 1013.81 223.74 279.52 838.65 740.13 620.35 807.78 5.17 55.73 18.36 10.71 28.02 36.25 54 ER8b ExonRegion 0 378.93 1.75 8.62 5.92 78.80 12.77 12.78 12.10 10.18 1.86 168.70 42.55 34.45 220.04 174.98 130.77 118.72 2.87 15.49 1.76 0.00 2.95 2.43 55 ER8c ExonRegion 0 8.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.50 14.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 IG29 Intergenic 0 17.57 0.00 3.37 1.61 6.35 1.69 3.66 4.41 1.94 1.80 41.27 11.38 8.18 26.35 17.07 11.75 16.10 0.36 3.78 1.12 0.58 2.75 3.88 57 IG29_SR1 SilentIntergenicRegion 0 17.62 0.00 3.38 1.61 6.36 1.70 3.67 4.42 1.95 1.81 41.37 11.41 8.20 26.42 17.11 11.78 16.14 0.36 3.79 1.12 0.58 2.75 3.89