Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BAT4 Gene 0 30.45 22.64 44.48 28.92 33.31 52.09 25.70 31.46 19.10 57.69 34.26 21.94 16.14 49.95 66.08 39.40 47.82 50.01 39.65 28.54 32.48 29.46 35.32 2 375906 Transcript 0 19.32 11.49 3.76 5.23 30.26 12.20 19.61 6.63 3.07 10.63 23.82 12.03 2.64 16.03 36.44 30.34 7.24 9.15 19.36 4.70 10.48 10.37 12.04 3 375900 Transcript 0 0.96 2.22 0.45 0.50 5.35 0.00 0.48 0.00 0.00 1.46 0.70 0.00 4.69 0.00 3.69 0.00 0.00 0.67 0.00 0.00 0.80 0.00 0.00 4 375895 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 432291 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 440842 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 375893 Transcript 0 0.00 0.00 0.00 0.00 5.31 2.28 0.71 0.00 0.00 2.73 2.80 0.00 0.00 2.38 3.09 2.18 4.03 2.74 1.59 2.66 0.00 0.28 0.98 8 458083 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.02 0.00 0.00 0.00 9 375896 Transcript 0 12.86 7.79 11.44 6.02 11.86 16.02 12.19 3.48 1.97 12.68 5.87 4.68 0.75 10.82 11.79 7.32 12.61 11.84 13.91 8.57 5.47 3.25 7.06 10 445768 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 456540 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 0.96 0.59 0.12 0.33 1.75 1.23 1.46 0.13 0.06 0.33 1.77 0.40 0.01 1.46 2.52 2.03 0.98 0.72 1.45 0.38 1.35 0.72 0.69 13 E1a_E3d KnownJunction 1 42.90 25.00 2.84 8.22 71.90 23.45 37.94 5.42 1.39 8.68 57.54 12.45 0.00 39.32 90.98 78.44 12.81 18.32 41.13 2.62 25.27 24.86 22.62 14 E1a_E3e NovelJunction 0 22.97 0.00 1.21 0.00 3.90 0.00 0.00 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.82 0.00 15 E1_Ad NovelBoundary 1 45.12 20.98 0.00 1.66 30.98 30.10 10.02 0.00 1.79 4.08 15.42 0.00 0.00 7.00 37.21 11.45 11.41 7.09 4.14 7.93 13.53 6.98 14.43 16 ER1b ExonRegion 0 0.96 2.22 0.45 0.50 5.35 0.00 0.48 0.00 0.00 1.46 0.70 0.00 4.69 0.00 3.69 0.00 0.00 0.67 0.00 0.00 0.80 0.00 0.00 17 ER1c ExonRegion 1 28.04 12.96 5.44 5.88 17.89 17.88 8.11 0.00 3.24 6.52 9.91 0.00 4.69 4.87 23.94 7.99 10.11 14.78 2.79 5.59 9.78 3.78 11.38 18 ER1d ExonRegion 0 51.77 26.71 9.24 11.71 24.30 35.68 16.89 1.07 5.14 15.31 20.95 0.00 1.01 14.97 31.60 23.54 25.78 34.61 7.75 11.96 17.69 12.11 27.06 19 E1_Ae KnownBoundary 0 39.04 28.48 14.64 15.58 15.70 19.59 18.81 0.00 7.00 18.32 12.00 0.00 0.00 9.01 13.97 16.15 20.29 43.98 4.61 5.75 10.93 8.51 19.38 20 ER1e ExonRegion 0 13.42 10.63 8.36 8.64 8.12 11.56 5.96 9.76 4.25 15.03 16.57 1.09 1.18 9.58 15.98 12.37 18.20 23.92 12.11 9.98 13.79 7.10 8.42 21 E1_Af KnownBoundary 0 24.45 2.43 17.53 25.94 0.00 5.62 0.00 16.68 4.63 33.28 23.85 0.00 0.00 14.54 38.20 12.48 26.27 29.64 12.71 5.94 8.28 22.23 23.22 22 ER1f ExonRegion 0 26.08 4.14 17.33 15.06 32.87 36.58 39.84 14.26 8.07 28.41 17.19 2.78 3.02 30.63 46.52 32.43 34.25 47.41 31.23 16.30 6.65 25.26 31.67 23 E1_Db NovelBoundary 0 0.00 0.00 5.80 0.00 7.47 0.00 3.44 4.56 0.00 1.16 2.63 0.00 0.00 2.12 13.35 7.26 0.00 20.85 4.52 0.00 3.15 0.00 3.50 24 E1b_E3d KnownJunction 0 9.19 2.43 16.74 9.29 18.08 34.75 22.43 11.09 3.24 27.16 13.74 0.00 6.01 11.77 33.62 40.50 11.31 44.40 53.65 19.88 0.00 5.69 18.10 25 E1b_E3e KnownJunction 0 2.82 0.00 3.16 0.00 6.45 0.00 0.00 0.00 6.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.02 0.00 26 E1c_E3d KnownJunction 0 0.00 0.00 0.00 0.00 3.48 2.73 0.00 0.00 0.00 3.17 2.63 0.00 0.00 0.00 0.00 0.00 4.77 2.03 0.00 3.20 0.00 0.00 0.00 27 ER1g ExonRegion 0 0.00 0.00 0.00 0.00 7.14 1.83 1.41 0.00 0.00 2.29 2.96 0.00 0.00 4.76 6.19 4.36 3.30 3.45 3.19 2.13 0.00 0.56 1.96 28 E2_Aa NovelBoundary 0 0.00 12.30 0.00 6.19 0.00 5.62 6.76 2.55 1.24 5.99 29.06 5.40 0.00 4.94 9.64 0.00 4.21 4.39 4.42 2.49 7.66 5.14 0.00 29 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.05 0.00 0.00 0.00 30 E2_Da NovelBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 2.16 0.00 3.47 3.04 16.58 6.15 5.84 7.24 5.19 3.50 12.72 6.38 3.67 3.26 0.00 0.00 0.00 31 E2a_E3d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER3a ExonRegion 0 7.04 2.59 5.72 2.74 3.63 6.37 3.73 1.03 0.00 5.77 3.10 0.90 0.00 9.49 5.17 4.63 8.69 5.95 5.15 4.94 4.79 0.83 2.21 33 E3_Ab KnownBoundary 0 0.00 2.89 3.16 0.00 0.00 2.10 2.08 0.00 0.00 3.25 0.00 0.00 0.00 2.30 0.00 8.20 4.11 4.85 3.76 8.37 5.75 3.12 4.35 34 E3_Ac KnownBoundary 0 30.97 6.18 5.85 1.93 4.33 27.37 12.19 4.64 0.00 4.41 0.00 0.00 0.00 5.53 8.90 0.00 12.81 16.50 26.17 3.26 2.90 0.00 0.00 35 ER3b ExonRegion 0 26.24 8.13 9.07 5.72 8.03 30.07 17.74 5.19 0.00 9.86 3.87 0.00 0.00 19.16 20.31 14.27 15.18 16.63 28.67 11.91 11.02 2.08 8.22 36 ER3c ExonRegion 1 28.27 15.99 16.51 7.20 6.93 19.82 17.64 7.66 0.00 15.42 4.94 0.00 4.79 16.82 11.30 3.69 21.89 22.21 16.36 4.57 10.30 4.23 6.89 37 E3_Da KnownBoundary 0 15.11 18.88 25.78 8.86 8.15 6.87 6.05 1.89 0.00 9.19 5.00 0.00 6.66 2.35 8.90 0.00 15.43 14.88 16.38 11.51 12.17 3.12 4.01 38 E3a_E3d KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 3.87 0.00 0.00 13.47 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 39 ER3d ExonRegion 0 18.68 13.00 17.16 9.31 20.08 25.67 20.64 5.92 3.93 19.59 8.64 8.46 1.51 12.15 18.41 10.01 16.54 17.73 22.66 12.20 6.16 5.68 11.92 40 E3_Ad KnownBoundary 0 14.52 14.34 8.90 16.51 30.22 64.96 27.34 6.45 5.21 29.33 14.69 12.45 0.00 36.02 21.51 25.38 18.33 33.04 52.14 11.89 10.26 14.51 23.56 41 ER3e ExonRegion 0 104.61 79.01 65.74 61.74 117.45 284.89 88.53 83.47 26.35 126.34 78.93 43.84 15.83 91.85 125.18 164.43 131.73 201.54 192.58 70.48 58.95 97.21 167.88 42 E3_Ae KnownBoundary 0 51.49 55.91 68.95 60.00 47.62 233.84 97.29 59.23 26.22 100.06 56.22 44.86 20.29 63.92 64.16 48.36 48.90 135.55 97.98 43.14 33.42 36.37 77.60 43 ER3f ExonRegion 1 66.73 46.83 86.80 57.55 62.76 150.98 51.96 53.74 40.23 112.62 119.78 26.63 35.46 66.00 98.73 46.20 116.18 95.64 123.17 60.09 83.61 44.92 109.77 44 E3_Db NovelBoundary 0 10.45 3.35 10.20 8.42 0.00 5.62 5.92 4.15 0.00 7.17 11.69 11.70 0.00 2.71 5.93 0.00 15.61 2.57 3.86 0.00 9.39 2.33 7.68 45 E3b_E4a KnownJunction 1 10.22 21.64 65.96 39.39 37.78 31.97 23.14 29.57 27.63 92.41 70.60 6.00 6.82 35.91 36.22 27.77 107.62 31.79 39.44 35.09 42.26 35.21 11.95 46 E3b_E4b KnownJunction 1 17.04 5.92 38.94 15.15 15.11 24.82 21.46 40.01 17.97 73.01 63.54 25.36 19.80 36.61 59.95 12.22 100.89 39.01 37.46 34.52 40.28 2.57 24.33 47 I3 Intron 0 14.95 6.78 7.16 3.98 5.25 5.04 9.61 6.06 2.89 5.03 4.93 3.40 3.36 6.48 10.44 7.58 9.06 3.97 8.75 4.59 5.62 6.13 4.03 48 I3_AR1 ActiveIntronRegion 0 15.06 6.83 7.22 4.01 5.29 5.07 9.68 6.10 2.91 5.07 4.97 3.42 3.38 6.53 10.50 7.64 9.14 3.99 8.82 4.63 5.66 6.18 4.06 49 ER4a ExonRegion 1 19.58 10.17 73.83 40.89 30.10 32.09 24.16 35.87 30.57 92.61 90.85 9.74 9.38 45.48 55.12 25.26 119.66 35.11 43.00 54.79 49.58 29.69 13.95 50 ER4b ExonRegion 0 82.73 58.70 109.48 77.66 84.87 140.70 63.09 79.27 40.91 137.18 91.49 58.80 38.11 125.35 166.93 115.09 132.42 121.25 111.37 68.62 84.78 73.24 99.29 51 E4_Da KnownBoundary 1 133.36 105.84 141.07 106.95 79.54 107.67 53.00 134.02 73.47 156.23 101.24 12.60 45.94 139.68 217.20 110.23 153.90 144.84 42.07 66.99 80.25 75.13 75.38 52 ER4c ExonRegion 0 124.22 76.85 134.20 74.12 68.28 102.69 45.88 96.43 59.55 127.11 92.00 35.22 42.93 133.49 151.93 90.02 116.74 129.02 41.23 49.26 58.91 69.12 61.44 53 E4_Db KnownBoundary 0 95.13 82.29 120.31 56.47 66.64 109.94 62.80 61.53 45.37 94.15 75.91 57.32 32.95 111.31 128.44 55.20 104.63 104.09 43.77 33.30 44.17 56.52 54.89 54 ER4d ExonRegion 0 50.40 47.24 124.06 63.79 87.55 102.96 46.45 62.45 46.07 122.11 69.18 71.45 58.05 134.36 156.35 78.49 117.98 130.94 57.24 68.42 75.58 69.54 65.28 55 E4_Dc KnownBoundary 0 60.23 38.74 142.99 69.19 59.76 91.08 40.94 61.24 43.89 95.60 61.54 93.78 82.46 144.27 243.77 114.24 84.24 149.61 49.60 73.82 51.89 85.18 129.41 56 ER4e ExonRegion 0 34.20 27.72 126.05 69.58 46.61 88.07 28.99 62.86 49.08 128.33 52.04 40.90 59.98 149.63 287.91 113.72 80.18 173.01 69.66 59.74 61.76 95.29 112.44 57 E4_Dd KnownBoundary 0 60.83 20.13 109.64 75.41 55.52 118.17 43.85 52.90 53.30 139.66 56.44 24.61 58.28 169.93 303.23 125.18 109.40 170.46 114.17 57.08 96.50 98.65 96.37 58 ER4f ExonRegion 0 27.10 33.75 85.76 44.61 39.11 103.34 37.46 34.40 33.38 97.85 60.66 18.34 32.69 116.28 139.03 61.72 101.81 99.14 65.46 41.43 90.16 60.24 49.89 59 E4_De NovelBoundary 0 50.90 57.75 89.77 38.12 53.06 120.61 37.32 51.18 43.66 99.77 56.07 12.45 43.67 141.97 126.46 61.95 80.13 93.31 37.74 57.53 68.45 48.68 39.52 60 E4_Df NovelBoundary 0 10.45 0.00 0.00 8.52 16.13 2.84 6.40 4.03 4.77 13.24 4.90 13.65 0.00 2.47 0.00 3.76 0.00 1.74 8.94 2.68 20.08 6.25 11.61 61 E4f_E5a KnownJunction 0 71.35 48.02 154.31 74.48 83.62 139.01 39.08 81.29 51.65 177.93 57.54 37.36 19.80 87.41 98.03 97.75 101.36 131.41 47.06 60.02 68.76 66.56 63.68 62 ER4g ExonRegion 0 42.47 41.62 113.39 56.38 54.23 115.41 33.54 63.38 44.38 130.02 57.34 33.19 26.73 105.08 102.90 67.86 84.83 115.55 40.45 59.01 65.67 48.62 45.13 63 E5_Aa NovelBoundary 0 41.56 5.13 7.27 25.24 34.63 11.24 1.85 13.97 5.24 7.58 8.53 6.30 6.82 7.71 8.90 7.86 7.29 11.03 0.00 2.81 8.96 3.12 4.35 64 ER5a ExonRegion 0 30.91 27.20 78.10 49.14 39.49 57.22 24.43 51.67 35.93 98.73 46.96 20.16 23.25 87.53 111.26 51.85 67.27 64.63 46.01 46.05 54.58 49.20 38.33 65 E5_Da KnownBoundary 0 3.41 6.05 9.28 8.92 17.66 7.50 24.11 34.21 13.89 29.47 24.16 11.55 0.00 12.01 14.34 7.69 9.26 6.63 17.32 6.14 4.70 10.84 11.01 66 ER5b ExonRegion 0 14.11 8.89 8.31 7.15 17.14 11.91 19.45 14.34 7.75 22.88 12.14 23.24 7.91 7.32 15.83 10.56 7.95 8.40 15.49 11.10 4.81 5.54 12.80