Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LY6G5C Gene 0 7.29 6.09 7.90 4.61 10.37 6.71 8.05 15.37 18.02 5.30 5.96 2.87 4.24 6.08 8.76 3.97 4.70 8.96 8.62 26.55 6.24 6.77 5.46 2 439020 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 467098 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 375863 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 375860 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 375861 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 472051 Transcript 0 0.00 4.40 0.63 1.37 8.35 4.25 1.96 13.44 12.86 1.65 0.29 0.21 0.19 0.12 0.10 0.00 0.00 0.94 0.47 17.04 0.11 0.10 0.00 8 461572 Transcript 0 1.04 6.80 1.81 0.87 7.95 5.07 4.98 10.25 10.91 3.48 0.89 1.58 0.00 2.55 1.51 3.00 1.33 8.16 6.39 14.34 0.12 0.88 1.20 9 474395 Transcript 0 12.75 1.63 3.95 0.59 12.75 8.45 6.01 7.19 5.93 0.00 2.59 0.00 0.00 6.39 10.19 0.00 4.43 2.21 1.72 19.74 6.70 5.51 8.23 10 383237 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.84 11 474678 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 460141 Transcript 0 4.49 6.15 6.36 1.98 7.99 6.19 11.46 6.40 8.42 3.69 3.51 4.33 6.52 3.34 5.56 4.25 4.64 6.71 8.70 20.25 2.49 2.39 5.56 13 375858 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 0.00 0.22 0.22 0.11 0.00 0.05 0.00 0.12 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.12 16 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2a ExonRegion 0 0.82 4.47 5.37 3.22 4.16 8.20 5.98 12.61 26.19 13.71 11.30 6.82 2.84 9.55 4.81 4.30 3.83 12.43 12.60 40.20 3.96 2.41 2.07 20 E2_Ab KnownBoundary 0 0.00 6.12 9.61 5.66 0.00 2.73 1.81 10.02 18.26 12.79 11.21 6.15 0.00 4.94 10.38 4.19 0.00 22.38 27.11 29.15 3.09 0.00 3.50 21 ER2b ExonRegion 0 0.00 3.44 7.73 2.46 8.51 1.42 4.34 10.12 23.20 8.72 7.94 1.43 1.35 7.06 4.71 4.98 2.10 11.43 5.85 23.05 2.36 1.33 1.10 22 E2_Da NovelBoundary 0 3.41 3.35 8.78 2.70 0.00 13.86 2.12 6.90 10.27 6.72 5.32 6.30 0.00 7.24 0.00 8.37 4.77 19.32 25.98 14.51 3.15 2.39 8.45 23 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E2a_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3_Aa NovelBoundary 0 0.00 2.43 6.45 1.23 11.29 10.05 16.12 7.52 14.21 1.99 2.05 5.25 5.84 4.94 18.54 17.52 3.46 2.57 0.00 23.27 5.50 0.00 10.16 26 ER3a ExonRegion 0 2.08 13.61 3.63 1.74 12.50 10.14 9.96 20.49 21.83 6.96 1.78 3.16 0.00 5.11 3.01 6.00 2.67 16.33 12.77 28.68 0.23 1.76 2.40 27 E3_Ab KnownBoundary 0 10.30 8.02 7.98 3.93 8.23 0.00 2.12 18.24 32.96 13.94 5.21 6.00 0.00 0.00 0.00 8.72 4.68 21.56 22.12 23.78 2.53 2.82 7.68 28 ER3b ExonRegion 0 2.56 4.07 8.36 2.57 8.56 4.31 3.73 16.05 19.17 4.83 4.25 1.03 0.93 3.86 2.48 0.63 1.08 11.24 7.56 29.00 0.95 1.15 3.08 29 E3_Da NovelBoundary 0 3.33 5.66 6.24 4.10 24.53 10.68 10.07 24.77 20.60 9.00 2.32 0.00 0.00 2.47 4.45 0.00 0.00 13.76 4.33 46.79 0.00 9.19 0.00 30 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 I3 Intron 0 0.64 3.07 2.20 0.61 3.23 3.87 3.20 7.00 6.11 2.58 3.50 0.00 0.00 2.51 0.62 0.00 1.00 6.37 2.88 21.19 0.67 0.00 2.66 33 I3_AR1 ActiveIntronRegion 0 0.00 4.58 2.35 0.00 5.35 8.04 4.18 6.64 4.89 2.17 6.37 0.00 0.00 2.38 0.00 0.00 0.00 8.13 6.07 25.19 0.29 0.00 3.99 34 I3_AR2 ActiveIntronRegion 0 1.30 2.06 2.30 1.22 1.68 0.57 2.63 7.91 7.75 3.14 1.26 0.00 0.00 2.88 1.26 0.00 2.03 5.50 0.35 19.92 1.06 0.00 1.80 35 E4_Aa NovelBoundary 0 0.00 3.16 8.25 3.80 7.98 8.57 6.36 11.99 10.56 5.75 2.53 0.00 0.00 2.65 5.19 0.00 3.65 3.44 0.00 24.22 2.84 9.25 4.27 36 ER4a ExonRegion 0 12.75 1.63 3.95 0.59 12.75 8.45 6.01 7.19 5.93 0.00 2.59 0.00 0.00 6.39 10.19 0.00 4.43 2.21 1.72 19.74 6.70 5.51 8.23 37 E4_Ab KnownBoundary 0 38.53 6.05 2.93 2.00 3.74 20.05 20.31 10.39 7.81 1.53 0.00 0.00 0.00 11.54 9.89 0.00 9.54 6.88 3.95 11.63 5.44 8.39 12.21 38 E4_Ac KnownBoundary 0 17.48 0.00 7.27 0.00 8.15 0.00 6.49 2.01 9.92 0.00 0.00 0.00 0.00 3.00 8.90 3.25 3.74 14.72 0.00 3.07 0.00 4.96 8.28 39 ER4b ExonRegion 0 30.93 5.32 5.94 1.36 10.70 12.84 15.07 8.91 13.59 0.00 0.00 0.00 0.00 10.62 14.73 1.83 10.66 3.84 2.45 14.73 4.07 8.17 15.36 40 ER4c ExonRegion 0 12.01 6.41 7.57 2.01 5.42 3.90 8.77 7.65 16.77 0.26 0.00 0.00 0.00 3.86 6.75 2.97 11.72 1.94 3.11 28.03 3.75 8.49 11.38 41 E4_Da KnownBoundary 0 3.11 9.54 6.71 3.90 7.39 2.38 9.98 14.29 16.20 2.66 0.00 0.00 0.00 2.41 0.00 0.00 4.21 0.00 4.24 39.37 10.44 8.51 3.84 42 ER4d ExonRegion 0 5.73 3.71 6.19 2.00 5.45 3.57 3.03 13.83 18.53 3.35 2.37 0.00 0.00 7.38 11.72 1.73 5.93 3.84 9.35 24.64 12.22 8.41 2.68 43 E4_Db KnownBoundary 0 6.74 8.75 8.13 6.36 4.07 10.68 3.97 9.08 19.36 7.20 2.21 0.00 0.00 13.89 18.54 6.49 8.70 4.19 4.71 20.71 10.93 7.96 3.24 44 ER4e ExonRegion 0 2.50 2.45 4.27 0.31 2.26 8.56 5.64 5.19 9.25 2.47 3.87 0.00 0.00 11.58 18.67 0.61 9.06 4.07 2.94 8.73 4.58 6.36 2.56 45 E4_Dc NovelBoundary 0 6.52 3.16 7.63 3.53 0.00 0.00 0.00 6.78 17.48 2.69 4.74 0.00 0.00 4.30 0.00 0.00 4.39 16.91 21.18 23.84 5.56 7.72 8.71 46 E4c_E5d KnownJunction 0 3.26 0.00 3.31 0.00 6.62 5.79 8.48 4.89 2.58 1.48 4.69 0.00 0.00 9.71 8.90 0.00 13.28 6.55 0.00 0.00 7.54 2.69 4.10 47 I4_SR1 SilentIntronRegion 0 0.77 2.21 1.32 1.47 0.97 2.65 3.35 12.99 11.95 5.56 2.80 0.00 1.40 3.32 3.27 3.23 1.19 11.30 10.37 20.01 0.00 1.51 2.12 48 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.84 49 ER5b ExonRegion 0 1.69 0.00 0.91 0.00 4.50 1.06 2.78 2.39 2.89 1.15 0.00 0.00 0.00 0.00 1.68 0.00 0.00 6.50 0.00 9.36 0.00 0.00 4.17 50 E5_Ac KnownBoundary 0 3.19 0.00 1.83 0.00 3.74 2.90 6.09 5.09 5.12 1.48 0.00 0.00 0.00 0.00 4.45 0.00 3.93 14.38 0.00 9.33 0.00 0.00 4.10 51 ER5c ExonRegion 0 0.66 2.83 1.59 0.94 0.97 5.35 1.17 3.71 3.02 0.70 0.00 0.00 0.00 0.00 0.38 0.63 1.19 6.66 3.03 16.43 0.00 0.00 6.84 52 E5_Da KnownBoundary 0 0.00 3.09 1.83 2.06 3.90 9.71 0.00 6.94 2.89 1.13 0.00 0.00 0.00 0.00 0.00 7.78 4.39 4.48 9.60 17.32 0.00 0.00 4.35 53 E5a_E5d KnownJunction 0 0.00 2.43 1.09 1.23 0.00 4.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 6.59 11.82 0.00 0.00 0.00 54 ER5d ExonRegion 0 0.97 2.44 2.58 0.49 2.70 3.00 1.46 7.81 4.90 1.07 0.00 0.00 1.80 0.73 0.00 1.20 5.27 2.87 4.07 10.39 0.00 1.13 2.78 55 E5_Db KnownBoundary 0 0.00 0.00 6.09 0.00 3.23 0.00 1.81 9.53 4.08 2.28 0.00 0.00 0.00 0.00 0.00 0.00 4.68 4.77 14.31 20.58 0.00 0.00 0.00 56 E5b_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER5e ExonRegion 0 4.49 6.15 6.36 1.98 7.99 6.19 11.46 6.40 8.42 3.69 3.51 4.33 6.52 3.34 5.56 4.25 4.64 6.71 8.70 20.25 2.49 2.39 5.56 58 E5_Ad KnownBoundary 0 0.00 12.56 0.00 0.00 0.00 0.00 0.00 2.55 9.61 0.00 4.90 0.00 0.00 0.00 4.45 0.00 3.74 1.74 3.67 20.20 2.97 2.27 0.00 59 ER5f ExonRegion 0 30.51 6.00 9.32 7.94 18.84 7.63 9.25 16.04 31.51 5.97 11.64 1.09 1.01 8.83 22.83 6.00 8.62 15.38 8.66 46.20 19.48 14.25 5.98 60 E5c_E6a KnownJunction 0 0.00 3.35 0.00 3.66 24.53 5.68 0.00 12.73 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.08 0.00 0.00 0.00 61 E5c_E7a KnownJunction 0 13.48 0.00 10.64 2.86 3.90 24.30 2.25 4.15 3.39 4.38 15.06 0.00 6.01 4.59 29.05 14.53 25.15 1.66 0.00 10.80 22.49 14.33 4.35 62 ER6a ExonRegion 0 0.00 9.05 3.15 3.18 9.14 6.87 5.45 25.51 24.13 4.43 1.43 1.07 0.95 0.61 0.50 0.00 0.00 2.65 2.35 34.33 0.55 0.51 0.00 63 E6a_E7a KnownJunction 0 0.00 9.60 0.00 0.00 8.06 8.69 4.33 28.96 22.74 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 38.80 0.00 0.00 0.00 64 E7_Aa NovelBoundary 0 10.45 3.16 11.32 2.96 19.35 0.00 11.79 9.32 2.81 6.39 0.00 0.00 0.00 0.00 5.93 0.00 0.00 5.64 13.46 2.94 0.00 0.00 0.00 65 ER7a ExonRegion 0 11.71 15.64 18.87 11.09 22.33 19.92 17.35 31.53 31.64 7.34 12.76 4.11 2.75 12.21 27.21 14.45 13.83 7.07 13.84 42.44 28.31 14.58 8.96 66 E7_Da KnownBoundary 0 10.45 9.60 22.12 23.74 43.12 35.26 30.25 42.55 52.37 8.00 24.32 6.30 13.80 12.48 26.70 15.30 8.88 12.10 15.91 46.47 32.19 25.60 15.19 67 ER7b ExonRegion 0 11.54 12.11 32.82 24.48 32.99 16.57 13.45 53.32 45.66 14.25 21.72 6.66 20.31 23.81 31.17 10.91 10.96 27.23 14.03 54.15 18.77 39.94 16.51 68 E7_Db KnownBoundary 0 28.08 10.85 47.04 22.84 32.94 9.65 12.85 73.44 66.93 13.83 24.37 12.45 16.56 34.91 82.82 14.87 13.93 18.82 21.37 55.16 18.66 45.86 24.50 69 ER7c ExonRegion 0 10.27 6.42 23.25 19.78 16.28 9.66 9.30 56.55 51.82 13.25 21.69 9.25 11.40 17.39 29.01 10.06 11.51 19.27 27.88 48.62 26.67 34.54 18.54 70 E7_Dc KnownBoundary 0 13.56 12.76 24.39 23.64 11.54 13.63 7.99 30.85 31.92 2.79 14.90 6.30 12.17 10.07 14.96 0.00 0.00 8.95 13.74 36.18 17.61 35.64 8.71 71 ER7d ExonRegion 0 41.66 11.60 13.16 16.03 25.77 11.65 9.92 32.66 29.31 7.84 15.25 0.44 9.64 15.97 20.79 6.66 6.79 11.74 13.15 25.55 20.77 23.69 10.58 72 E7_Dd KnownBoundary 0 29.78 8.09 4.91 10.79 23.85 2.90 18.15 31.46 22.34 2.53 6.58 0.00 14.93 14.07 24.48 3.67 8.51 13.60 24.85 14.89 5.19 9.49 6.91 73 ER7e ExonRegion 0 11.38 1.58 3.03 5.14 9.97 0.92 5.89 12.19 7.41 0.95 1.59 3.57 6.45 3.69 8.92 0.97 2.48 5.87 15.85 6.70 6.50 5.42 4.33 74 ER7f ExonRegion 0 4.23 0.00 0.61 0.00 1.67 0.00 0.50 0.65 1.31 0.00 0.00 2.44 0.00 0.00 2.18 0.00 0.00 3.12 4.38 0.93 2.20 3.78 1.65