Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C6orf27 Gene 0 2.74 4.79 20.87 8.17 9.62 5.23 1.75 9.36 23.52 22.95 9.61 2.39 2.63 4.65 13.74 0.57 0.77 8.60 3.82 8.35 7.74 1.64 1.82 2 447450 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 375686 Transcript 0 0.00 0.18 0.02 0.00 0.00 0.00 0.00 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 375688 Transcript 0 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.31 0.00 2.90 0.00 0.00 1.22 2.18 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 5 467576 Transcript 0 0.00 0.00 6.27 1.95 1.66 2.36 1.72 2.48 5.40 8.66 3.58 2.93 3.17 0.00 0.00 0.00 1.78 0.81 0.00 0.00 7.14 1.19 0.00 6 497645 Transcript 0 0.00 0.00 7.97 4.09 3.40 2.97 0.84 5.56 11.58 11.82 4.46 1.03 0.00 2.09 6.61 1.20 1.34 4.68 7.43 5.20 3.78 0.43 3.12 7 418870 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 487013 Transcript 0 2.63 1.59 1.60 1.40 1.85 0.92 1.71 2.25 3.77 2.05 0.80 0.33 1.28 0.50 1.87 0.27 0.76 1.23 0.88 2.65 1.02 0.67 0.95 9 486423 Transcript 0 0.00 2.81 9.14 0.14 5.72 5.34 2.30 5.05 11.77 8.54 6.26 1.15 0.06 0.25 1.76 0.00 0.00 3.56 1.09 2.18 2.43 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 1.87 1.18 1.55 0.00 0.00 3.23 2.67 3.44 0.05 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 2.58 0.46 0.00 0.54 11 E1_Ab KnownBoundary 0 0.00 0.00 5.65 2.06 7.98 0.00 0.00 2.18 2.81 4.65 0.00 0.00 0.00 0.00 5.19 0.00 0.00 3.86 0.00 6.46 0.00 0.00 0.00 12 E1_Ac KnownBoundary 0 0.00 0.00 6.33 4.13 0.00 5.11 0.00 6.98 11.98 15.88 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 3.13 9.45 0.00 4.18 13 ER1b ExonRegion 0 0.00 0.00 5.85 2.97 2.68 2.50 0.00 6.84 7.75 9.96 3.34 0.00 0.00 0.07 2.90 0.00 0.00 0.00 2.90 6.77 6.61 0.00 2.94 14 ER1c ExonRegion 0 0.00 1.27 5.63 4.38 7.96 7.12 0.00 5.56 9.49 10.36 4.23 0.00 0.00 1.41 4.79 0.00 0.00 4.02 1.60 5.81 7.96 0.65 1.82 15 E1_Da NovelBoundary 0 0.00 0.00 3.37 0.00 8.23 0.00 1.94 1.81 3.94 11.87 0.00 12.00 0.00 0.00 13.35 0.00 0.00 8.66 0.00 5.82 5.50 0.00 0.00 16 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 9.69 11.23 5.16 0.00 0.00 2.47 15.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 17 E2_Aa NovelBoundary 0 0.00 0.00 19.84 0.00 8.49 8.01 0.00 11.95 26.27 23.10 7.69 6.30 0.00 0.00 8.90 0.00 4.77 3.86 3.58 3.26 8.77 0.00 3.41 18 ER2a ExonRegion 0 0.00 0.00 7.97 4.09 3.40 2.97 0.84 5.56 11.58 11.82 4.46 1.03 0.00 2.09 6.61 1.20 1.34 4.68 7.43 5.20 3.78 0.43 3.12 19 E2_Ab KnownBoundary 0 0.00 0.00 10.14 2.03 0.00 0.00 2.25 4.07 12.50 16.14 2.63 6.30 0.00 0.00 0.00 0.00 0.00 8.62 0.00 3.26 5.50 0.00 4.35 20 E2_Ac KnownBoundary 0 0.00 0.00 4.52 2.00 6.37 0.00 0.00 2.46 12.56 11.50 13.64 0.00 0.00 0.00 13.60 3.93 0.00 4.10 9.60 0.00 6.30 0.00 0.00 21 ER2b ExonRegion 0 0.00 0.00 13.48 3.75 8.03 0.00 1.32 7.35 27.17 31.54 13.53 4.33 0.00 3.25 14.51 0.00 0.00 13.40 6.37 5.32 8.81 2.08 5.87 22 ER2c ExonRegion 0 0.00 0.85 11.38 2.52 5.18 2.07 0.65 5.45 20.68 20.65 5.72 0.14 0.00 2.06 10.67 0.62 0.58 10.77 4.05 6.35 4.35 1.60 2.86 23 E2a_E3a KnownJunction 0 0.00 0.00 8.34 1.93 0.00 2.90 0.00 4.23 22.02 21.27 9.48 0.00 0.00 2.47 13.35 0.00 3.65 4.93 4.24 5.88 0.00 5.51 0.00 24 ER3a ExonRegion 0 1.23 0.00 11.07 2.23 2.40 1.88 0.00 6.21 15.24 12.18 8.59 0.00 1.78 1.83 8.08 0.00 0.33 2.53 0.28 4.52 1.45 2.61 0.00 25 E3_Da KnownBoundary 0 6.74 3.22 15.49 1.76 4.33 0.00 0.00 10.88 17.13 7.87 10.27 0.00 6.82 4.94 0.00 0.00 0.00 6.09 3.58 6.07 8.83 2.51 0.00 26 E3a_E4a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.79 0.00 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3b ExonRegion 0 1.67 0.00 8.32 2.08 7.72 1.59 2.08 5.38 11.23 15.67 4.64 0.00 0.54 3.26 10.53 0.00 0.00 6.21 1.33 6.75 4.58 0.81 1.43 28 E3_Db KnownBoundary 0 7.56 0.00 8.66 5.59 7.47 5.79 4.37 10.84 5.70 20.87 2.37 0.00 0.00 2.24 8.90 0.00 0.00 3.61 0.00 2.94 2.41 0.00 0.00 29 ER3c ExonRegion 0 0.53 0.00 2.53 2.38 2.53 3.13 0.54 1.80 6.34 12.28 4.94 0.00 0.59 3.27 14.75 0.00 0.00 0.53 0.00 5.33 2.37 1.75 0.00 30 E3c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.97 8.25 5.16 0.00 0.00 7.36 10.75 0.00 0.00 0.00 0.00 0.00 2.72 3.12 0.00 31 E4_Aa NovelBoundary 0 0.00 3.29 19.01 0.00 22.41 11.53 4.24 6.41 17.77 13.14 2.16 0.00 0.00 4.94 0.00 0.00 0.00 0.00 3.48 0.00 2.66 0.00 0.00 32 ER4a ExonRegion 0 0.00 0.92 17.75 6.53 3.75 0.76 0.00 4.56 19.09 20.68 13.13 0.00 1.45 6.28 13.04 0.00 1.74 7.56 0.00 5.97 5.75 2.08 2.72 33 E4a_E5a KnownJunction 0 3.48 2.83 34.77 15.88 3.65 5.51 0.00 13.55 37.82 43.84 9.11 0.00 5.68 4.94 18.54 0.00 0.00 13.68 0.00 14.76 8.71 5.82 3.67 34 ER5a ExonRegion 0 2.76 3.26 28.43 6.52 10.75 6.91 0.14 4.47 39.35 32.59 15.90 0.00 1.77 8.47 17.33 0.00 2.11 15.80 10.10 12.04 9.29 3.51 0.32 35 E5a_E6a KnownJunction 0 0.00 3.22 19.66 1.30 6.71 0.00 1.90 1.93 23.84 23.83 7.16 0.00 0.00 4.94 23.98 0.00 8.70 5.93 0.00 5.82 14.09 0.00 0.00 36 E5a_E6b KnownJunction 0 0.00 0.00 10.70 3.90 3.31 4.71 3.44 4.97 9.00 17.33 2.05 5.85 6.33 0.00 0.00 0.00 3.55 1.62 0.00 0.00 14.27 2.39 0.00 37 E6_Aa NovelBoundary 0 5.78 0.00 17.80 7.36 0.00 5.34 0.00 0.00 9.26 20.84 2.47 0.00 0.00 2.30 0.00 4.36 0.00 1.99 4.80 0.00 2.97 0.00 4.35 38 ER6a ExonRegion 0 1.99 11.33 25.24 7.30 15.46 5.55 1.98 6.53 33.17 27.75 7.58 0.74 0.48 7.32 19.96 0.00 1.50 8.53 2.80 12.38 14.48 2.88 1.28 39 E6_Ab KnownBoundary 0 0.00 9.14 31.52 13.12 11.88 11.07 4.15 14.46 24.02 33.31 7.11 7.50 6.82 4.94 10.01 0.00 4.39 9.70 0.00 0.00 23.72 5.63 0.00 40 ER6b ExonRegion 0 1.13 5.43 28.71 14.11 18.76 3.83 1.14 11.73 30.49 37.78 7.27 8.28 4.27 10.14 10.72 1.92 1.84 11.55 5.52 5.39 14.98 2.87 1.90 41 E6a_E7a KnownJunction 0 3.04 2.96 36.81 16.22 27.76 2.44 0.00 7.76 55.27 31.72 10.06 5.55 0.00 0.00 34.86 0.00 4.30 11.98 12.24 8.82 8.90 3.12 0.00 42 ER7a ExonRegion 0 2.41 8.97 31.72 11.95 16.19 6.88 1.83 10.30 37.82 32.06 8.61 2.92 0.28 3.83 15.13 0.00 1.07 12.86 3.32 10.15 11.64 1.35 2.84 43 E7_Ab KnownBoundary 0 3.78 5.85 28.30 16.28 12.73 2.10 3.40 9.90 37.59 46.36 4.79 7.65 0.00 0.00 4.45 0.00 0.00 11.69 0.00 11.63 10.50 2.57 3.24 44 ER7b ExonRegion 0 3.00 14.50 30.36 13.11 15.40 5.71 3.37 10.14 31.32 31.42 10.18 9.31 5.04 7.69 8.81 0.00 3.05 11.30 1.32 10.72 10.15 2.28 5.04 45 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E7a_E9a KnownJunction 0 3.11 17.96 36.43 13.68 26.74 10.28 4.33 11.09 44.24 36.37 8.74 6.15 6.82 2.47 13.35 0.00 0.00 13.72 9.60 11.19 16.06 0.00 0.00 47 E8_Aa NovelBoundary 0 373.18 327.97 197.24 200.91 292.87 226.40 377.19 201.92 189.75 158.49 112.45 30.61 60.55 56.68 76.40 240.54 262.27 296.10 280.01 316.07 92.79 93.44 205.73 48 ER8a ExonRegion 0 5.26 3.18 3.19 2.80 3.69 1.84 3.41 4.51 4.16 4.09 1.60 0.66 2.57 1.00 3.74 0.55 1.52 2.46 1.76 5.30 2.03 1.34 1.90 49 ER9a ExonRegion 0 1.20 8.31 28.05 10.41 17.05 10.92 3.09 10.75 36.14 40.22 12.16 7.66 1.74 7.72 11.78 0.00 0.00 10.12 3.04 13.65 14.98 1.57 1.33 50 E9a_E10a KnownJunction 0 0.00 5.85 29.04 9.49 23.51 5.22 0.00 20.37 44.07 37.93 15.16 0.00 6.66 4.94 10.88 0.00 0.00 12.93 4.71 14.83 8.40 2.94 0.00 51 ER10a ExonRegion 0 2.42 6.85 31.19 12.10 15.62 5.88 1.52 12.63 38.07 32.75 16.32 3.44 4.53 6.84 29.26 0.00 0.00 11.59 4.55 15.00 13.73 2.49 3.49 52 E10a_E11a KnownJunction 0 2.96 8.88 32.44 16.02 4.16 2.38 2.21 13.47 29.77 37.31 11.37 18.91 0.00 7.06 10.51 0.00 0.00 6.22 3.76 11.25 5.62 3.06 3.84 53 ER11a ExonRegion 0 2.99 8.71 24.94 11.97 12.82 7.96 2.88 13.63 33.47 39.97 17.76 6.21 5.60 7.61 20.67 0.00 0.00 9.71 6.88 12.67 9.96 4.17 5.05 54 E11a_E12a KnownJunction 0 0.00 2.76 18.04 6.13 11.12 4.77 2.25 0.00 22.05 31.59 14.53 0.00 6.82 2.12 14.96 0.00 0.00 6.92 8.94 8.76 9.08 6.00 0.00 55 E12_Aa NovelBoundary 0 0.00 0.00 17.71 0.00 0.00 0.00 0.00 3.53 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 56 ER12a ExonRegion 0 1.74 5.20 24.35 11.16 20.62 12.94 1.21 15.58 32.51 28.12 11.00 0.45 0.97 3.53 12.84 0.00 0.00 6.63 1.87 12.08 14.36 3.58 1.94 57 E12_Ab KnownBoundary 0 0.00 3.35 23.48 17.25 34.21 14.42 1.94 29.37 43.11 32.45 10.32 5.55 0.00 4.59 8.90 0.00 0.00 14.09 4.80 12.78 17.24 0.00 8.19 58 ER12b ExonRegion 0 5.34 8.98 30.01 12.22 18.69 18.08 1.98 19.25 46.80 32.33 21.32 4.33 2.24 7.57 18.79 2.19 0.00 12.34 2.01 13.06 7.32 2.15 4.88 59 E12a_E13a KnownJunction 0 9.41 9.93 47.31 10.72 23.34 23.74 6.67 11.79 51.24 35.94 7.84 0.00 6.82 12.83 22.87 0.00 0.00 6.05 4.33 5.11 5.81 2.88 0.00 60 ER13a ExonRegion 0 2.89 7.97 39.48 16.43 11.44 3.31 1.11 23.35 40.59 33.38 14.14 1.44 3.95 6.74 18.68 1.05 0.00 12.52 6.79 9.28 8.81 1.87 0.98 61 E13a_E14a KnownJunction 0 5.93 0.00 41.04 22.37 23.68 2.78 5.65 35.73 55.06 43.36 11.74 0.00 6.82 9.89 9.15 0.00 0.00 7.21 4.42 5.82 11.00 0.00 0.00 62 ER14a ExonRegion 0 6.03 6.65 29.88 23.89 14.18 7.45 2.05 18.44 44.13 38.62 17.40 1.30 2.98 10.23 19.09 3.26 0.00 11.27 4.56 8.28 12.80 0.00 0.32 63 E14_Da NovelBoundary 0 3.78 8.42 1.83 0.00 3.99 20.39 0.00 10.56 7.96 14.48 15.16 0.00 0.00 0.00 11.50 0.00 4.30 12.10 12.52 9.46 2.59 0.00 0.00 64 E14a_E15a KnownJunction 0 3.78 3.16 27.38 27.17 3.90 0.00 0.00 5.22 34.43 31.40 4.00 6.30 0.00 2.47 13.72 0.00 0.00 4.73 4.80 2.49 2.97 0.00 3.33 65 E15_Aa NovelBoundary 0 0.00 0.00 14.01 1.60 6.88 2.21 4.06 2.55 1.56 4.67 0.00 6.30 0.00 2.24 0.00 0.00 0.00 7.38 0.00 0.00 0.00 0.00 0.00 66 ER15a ExonRegion 0 6.68 0.47 40.39 26.16 8.44 2.96 0.00 13.03 40.14 41.77 11.89 2.33 1.98 1.75 13.61 0.00 0.00 6.18 3.80 7.61 6.19 0.00 2.94 67 E15_Ab KnownBoundary 0 25.12 9.14 63.98 30.03 28.01 11.13 4.50 21.52 48.67 58.88 32.17 0.00 21.26 5.47 15.08 0.00 0.00 12.06 0.00 21.09 20.32 2.69 0.00 68 ER15b ExonRegion 0 14.21 4.75 50.18 25.05 16.31 8.47 1.32 13.83 40.17 47.68 26.32 0.00 9.38 3.63 11.05 0.14 0.00 12.93 0.76 16.51 16.69 1.39 2.10 69 ER15c ExonRegion 0 6.90 9.81 45.16 17.42 15.22 12.24 3.19 14.02 34.33 44.32 14.97 5.45 4.93 7.71 19.61 2.86 0.00 13.66 8.45 12.75 11.45 0.99 0.00 70 E15_Db KnownBoundary 0 6.08 6.71 46.36 10.85 15.28 2.90 4.50 27.15 25.23 38.49 2.47 6.30 0.00 4.71 27.44 0.00 0.00 6.84 9.04 9.33 8.40 2.57 0.00 71 ER15d ExonRegion 0 1.09 2.45 40.79 9.57 11.45 4.56 3.67 14.81 27.61 30.56 9.60 5.00 5.37 4.79 21.48 0.00 0.00 7.47 5.62 10.29 8.95 2.47 0.00 72 E15_Dc KnownBoundary 0 0.00 0.00 10.23 1.90 3.99 5.22 6.45 5.34 6.92 4.57 2.00 6.30 0.00 2.47 0.00 0.00 0.00 2.49 4.80 3.26 2.47 0.00 0.00 73 E15c_E15c KnownJunction 0 0.00 3.03 23.59 6.66 17.15 5.56 0.00 6.28 17.59 17.78 10.11 6.30 6.82 0.00 13.35 0.00 0.00 9.74 0.00 0.00 11.00 0.00 0.00 74 ER15e ExonRegion 0 0.00 2.81 9.14 0.14 5.72 5.34 2.30 5.05 11.77 8.54 6.26 1.15 0.06 0.25 1.76 0.00 0.00 3.56 1.09 2.18 2.43 0.00 0.00 75 E15_Ac KnownBoundary 0 0.00 0.00 2.51 0.00 11.21 0.00 0.00 0.00 11.00 8.52 5.37 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 2.53 0.00 0.00 76 ER15f ExonRegion 0 3.99 9.16 46.31 12.01 11.66 4.69 0.11 14.70 35.96 37.11 16.75 3.74 0.69 8.91 25.01 0.00 0.00 20.85 8.11 12.72 7.63 0.35 0.00 77 E15_Dd KnownBoundary 0 3.78 8.49 70.13 22.94 4.33 5.39 0.00 29.86 68.03 43.52 27.48 12.30 0.00 4.94 39.56 3.93 0.00 38.84 12.89 30.55 16.99 2.88 0.00 78 ER15g ExonRegion 0 1.20 8.60 49.07 10.78 1.70 6.21 0.00 16.22 47.83 33.21 18.27 6.69 0.00 5.72 39.43 0.00 0.00 25.15 8.18 12.43 15.38 3.93 0.00 79 E15e_E16a KnownJunction 0 0.00 10.06 53.69 7.52 4.16 10.90 0.00 15.03 33.04 32.29 7.26 0.00 0.00 4.65 40.05 0.00 0.00 25.54 9.41 8.82 12.29 5.82 0.00 80 E16_Aa NovelBoundary 0 0.00 0.00 17.12 0.00 0.00 3.97 0.00 7.60 14.44 8.27 4.00 0.00 0.00 2.30 4.70 0.00 0.00 3.15 0.00 4.99 2.41 2.39 0.00 81 ER16a ExonRegion 0 0.00 6.78 32.03 2.66 4.08 6.81 0.00 5.60 25.64 22.28 7.55 7.22 3.13 5.26 32.88 0.00 0.94 11.88 6.37 7.90 8.60 3.87 0.00 82 ER16b ExonRegion 0 5.37 6.34 33.24 8.64 18.94 9.73 2.79 13.02 32.11 25.97 19.72 7.48 8.44 6.04 24.25 0.66 1.80 13.80 3.10 7.57 10.16 0.50 1.83 83 E16b_E17a KnownJunction 0 16.74 11.71 46.98 28.23 34.72 10.96 6.71 16.35 39.67 46.42 25.43 12.15 5.84 9.54 14.71 4.10 4.02 35.44 12.52 17.58 16.37 3.12 0.00 84 E16c_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 ER16c ExonRegion 0 0.00 0.36 0.04 0.00 0.00 0.00 0.00 0.06 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER17a ExonRegion 0 2.64 5.06 17.02 9.45 6.17 3.73 1.01 9.02 14.36 12.82 8.38 1.08 6.68 5.73 16.41 1.14 2.13 8.92 3.83 6.35 9.25 0.94 1.79 87 ER17b ExonRegion 0 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.31 0.00 2.90 0.00 0.00 1.22 2.18 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00